ViewGene
Locus Name:
GeneID:
Location:

GeneID:6362
TrivialName: PA14_18980
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18980
PAO1 Ortholog Locus:
Sequence Length:1113
Protein Length:370
Start: 1640089
Stop: 1638977
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
PA14_18990 (GeneID 6361) and PA14_18980 (GeneID 6362) replaced by PA14_18985 (GeneID 7390). Homology: gb|AAG06874.1|AE004769_7 (AE004769) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 369/370 (99%), Positives = 369/370 (99%)
Sequence:
ATGGAAGTGCTGGTGGACTTCCTCGAAGGCGATCCCGACCAGCCGCTGGTCAGCGGCTGCGTCTACCACGCC
GCCCACCCGGTGCCCTACGAGTTGCCGGCGAACCAGACCCGCAGCGTCTTCAAGAGCCTCAGCAGCCCTGGC
GGCGGTGGCTACAACGAGCTGCGCATCGAGGATCGCAAGGGCCAGGAACAGATCTTCGTCCATGCCCAGCGC
GACTGGGACGAGAACATCGAGCATGACCAGAAGATCCGCGTCGGCCACGAACGCCACGACACCGTGGAGGCG
AACAGCTACAGCGAGTTCAAGGCCGAGGAGCATCACACCGTGCACGGAGAGCGCAAGGTCGAGCTGAAGGCC
GATGACCACCTGACGGTCGGCGACAGCCAGCACGTGAAGCTCGGTCGTGCCTACCTGGCCAGGGCCGGGCGC
GAGATCCACCTGAAGGCCGGGCAGAAGATGGTGATCGAGGCTGACAGCGAACTGACGGTGAAGGCCGGCGGC
AGCTTCATCCGGCTCGACGCAAGCGGCATCGCCATCAGCGGCCCGCTGGCACGGATCAATGCAGGCGGCGCA
CCGGGAAGCGGCTCGGGGATCGCGATCAAGATGCCGTTGACGCCGGGGGCGGCGGACGCCGATGTCGCAGGA
CGCCCGCTACAACCCGCCAACGCCGGTCTCCACGCCAGCGATCCGAAGCAGAACGGCGAATACCGCTTCGAT
ATCCGTTTGCAGGATATTCCCGGAGACGAAGGATTCCCCTTGATTCATACGCCCTGGCGCATCGTCCAGGGT
AAGGAGCACAACCTGGTATTGGAAGGCGAGAGCGACGAGAAGGGACGGTTGGTGCTGGACGACACTCAACAG
CGTCAGCTATCGAACGCCTGCGAGCGTGCGCCTGGCGATGTCTGGCTGGTGTATCCGGGGCAACGAATAGGC
ATCCGTCCGCATCGGGAGCGTGAGGGTTGGGACGCCACGCGCCACGCGCTGGGCGCGCTGGACTTCCATGAC
ACCCTGGGCGGCCAGCGCGCGCCCACCCCGCTCGAACACCAGCGCGGCAAGCTCGACAGTTGCTGCGAAGGC
GACCTTTATTCCCACCTACTGGCCAAGGACTGA
Translation:
MEVLVDFLEGDPDQPLVSGCVYHAAHPVPYELPANQTRSVFKSLSSPGGGGYNELRIEDRKGQEQIFVHAQR
DWDENIEHDQKIRVGHERHDTVEANSYSEFKAEEHHTVHGERKVELKADDHLTVGDSQHVKLGRAYLARAGR
EIHLKAGQKMVIEADSELTVKAGGSFIRLDASGIAISGPLARINAGGAPGSGSGIAIKMPLTPGAADADVAG
RPLQPANAGLHASDPKQNGEYRFDIRLQDIPGDEGFPLIHTPWRIVQGKEHNLVLEGESDEKGRLVLDDTQQ
RQLSNACERAPGDVWLVYPGQRIGIRPHREREGWDATRHALGALDFHDTLGGQRAPTPLEHQRGKLDSCCEG
DLYSHLLAKD*
AnnotationID:6363GeneID:6362
AnnotatorUID: danlee
Modification Date/Time: 2006-02-07 14:02:10
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAO58837.1| (AE016875) Rhs element Vgr protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 678

 Score =  330 bits (847), Expect = 6e-90
 Identities = 160/234 (68%), Positives = 187/234 (79%), Gaps = 2/234 (0%)

>gb|AAF95932.1| (AE004345) vgrG protein [Vibrio cholerae]
          Length = 694

 Score =  195 bits (496), Expect = 3e-49
 Identities = 95/210 (45%), Positives = 140/210 (66%), Gaps = 1/210 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:
PA14_18990 (GeneID 6361) and PA14_18980 (GeneID 6362) replaced by PA14_18985 (GeneID 7390)



















    ReferenceID:12546




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29832




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32057




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6362_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6362
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7973
                           PA3486_tr
                           translation of PA3486
                           808
                           45.66
                           45.66
                           438
                           1963.0
     

     
     
199036
                           gb|AAG06874.1|AE004769_7
                           (AE004769) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           808
                           45.66
                           45.66
                           438
                           1963.0
     

     
     
7974
                           PA3294_tr
                           translation of PA3294
                           817
                           26.31
                           26.92
                           576
                           1095.0
     

     
     
199037
                           gb|AAG06682.1|AE004751_8
                           (AE004751) hypothetical protein PA3294 [Pseudomonas aeruginosa PAO1]
                           817
                           26.31
                           26.92
                           576
                           1095.0
     

     
     
199041
                           gb|AAG08475.1|AE004921_12
                           (AE004921) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           833
                           22.20
                           26.77
                           506
                           823.0
     

     






      

          
GC ORFID: 49364How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3313845Stop: 3314957

          
Length: 1113


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3486 translation of PA3486Homolog Bit Score 760.0

          
Other Homologs:  t_PA3486 translation of PA3486 (BLASTP 760), t_PA3294 translation of PA3294 (BLASTP 429), t_PA5266 translation of PA5266 (BLASTP 332), t_PA5090 translation of PA5090 (BLASTP 314), t_PA2685 translation of PA2685 (BLASTP 121), t_PA0095 translation of PA0095 (BLASTP 121)

          
GC ORF Sequence

           
ATGGAAGTGCTGGTGGACTTCCTCGAAGGCGATCCCGACCAGCCGCTGGTCAGCGGCTGCGTCTACCACGCC 
GCCCACCCGGTGCCCTACGAGTTGCCGGCGAACCAGACCCGCAGCGTCTTCAAGAGCCTCAGCAGCCCTGGC 
GGCGGTGGCTACAACGAGCTGCGCATCGAGGATCGCAAGGGCCAGGAACAGATCTTCGTCCATGCCCAGCGC 
GACTGGGACGAGAACATCGAGCATGACCAGAAGATCCGCGTCGGCCACGAACGCCACGACACCGTGGAGGCG 
AACAGCTACAGCGAGTTCAAGGCCGAGGAGCATCACACCGTGCACGGAGAGCGCAAGGTCGAGCTGAAGGCC 
GATGACCACCTGACGGTCGGCGACAGCCAGCACGTGAAGCTCGGTCGTGCCTACCTGGCCAGGGCCGGGCGC 
GAGATCCACCTGAAGGCCGGGCAGAAGATGGTGATCGAGGCTGACAGCGAACTGACGGTGAAGGCCGGCGGC 
AGCTTCATCCGGCTCGACGCAAGCGGCATCGCCATCAGCGGCCCGCTGGCACGGATCAATGCAGGCGGCGCA 
CCGGGAAGCGGCTCGGGGATCGCGATCAAGATGCCGTTGACGCCGGGGGCGGCGGACGCCGATGTCGCAGGA 
CGCCCGCTACAACCCGCCAACGCCGGTCTCCACGCCAGCGATCCGAAGCAGAACGGCGAATACCGCTTCGAT 
ATCCGTTTGCAGGATATTCCCGGAGACGAAGGATTCCCCTTGATTCATACGCCCTGGCGCATCGTCCAGGGT 
AAGGAGCACAACCTGGTATTGGAAGGCGAGAGCGACGAGAAGGGACGGTTGGTGCTGGACGACACTCAACAG 
CGTCAGCTATCGAACGCCTGCGAGCGTGCGCCTGGCGATGTCTGGCTGGTGTATCCGGGGCAACGAATAGGC 
ATCCGTCCGCATCGGGAGCGTGAGGGTTGGGACGCCACGCGCCACGCGCTGGGCGCGCTGGACTTCCATGAC 
ACCCTGGGCGGCCAGCGCGCGCCCACCCCGCTCGAACACCAGCGCGGCAAGCTCGACAGTTGCTGCGAAGGC 
GACCTTTATTCCCACCTACTGGCCAAGGACTGA