ViewGene
Locus Name:
GeneID:
Location:

GeneID:6361
TrivialName: PA14_18990
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18990
PAO1 Ortholog Locus:
Sequence Length:1263
Protein Length:420
Start: 1641403
Stop: 1640143
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
PA14_18990 (GeneID 6361) and PA14_18980 (GeneID 6362) replaced by PA14_18985 (GeneID 7390). Homology: gb|AAG06874.1|AE004769_7 (AE004769) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 387/393 (98%), Positives = 390/393 (99%)
Sequence:
ATGTTCAACCCGGCCAACCAGACCCACTTCAGCCTCAGCCTCGACGGCCTCCGTCACGACCTGCAGGTTCTC
GAATTCAGCGGCCACGAAGGCATCAGCCGGCCCTACCGCTTCGAACTCGAACTGGTCAGCGAGCGCGCCGGC
CTCGACCTCGAAGCGCTCATGCACCGACCCGCCTTCCTCGCCTTCACCCCGCAGGGCCAGGGCGTCCACGGC
CTGGTCTACGGCGCCGCCCAGGCCGACGCGGGCAAGCGCCTGACCCGCTATCGCCTCACCCTCGTGCCGCAA
CTGGCCTACCTCGCGCAGCGCAGCAACCAGCGGATCTTCCAGCACCTCACGGTGCCGCAGATCGTCGCCCTG
GTCCTCGAGGAGCACGGCATCCTCGCCGACGCCTACCGCTTCCAGCTCGGCACCCGGTATCCCGAGCGCGAA
TACTGCGTGCAGTACGACGAAAGCGACCTGCATTTCGTCCAGCGCCTCTGTGCCGAAGAGGGCATCCATTTC
CATTTCCGGCACAGCGCCGAGGCGCACCTGCTGGTGTTCGGCGACGACCAGACGGTGTTCCCCCGCCTGGGC
CGTCCCACCGCCTACGTGCACGACAGCGGGCTGGTCGCCGACGAACCGGTGATCAAGCGCTTCAGCCTGCGC
CTGGCCAGCCGCACCACGCGCACCACCCGCCGCGACTACGACTTCGAGAAGCCGCGGCTGCTGCTGGAGGCC
GGCAACCGCCCCGCTGCCGACGCCCCGGCCGAGCCGGACCTGGAGGACTACGACTACCCCGGTCGCTTCGTC
GATCGCCAGCGCGGCAAGCTGCTCAGCCAGCGCGCCCTGGAGCGCCACCGCGCCGACCGGCGCCTGGGCGAA
GGGGTCAGCGACCAGCCGCTGCTGGTCAGCGGGCACTTCCTGGAGATCGCCGAGCACCCGCGCGCGGAGTGG
AACGACCTGTGGCTGCTCAGCGAAGTCTTCCAcGAaGGcaagCAGCCGcAggTGCTGGAagagaACGTTACC
ttcGAcACGTcggCcaGCACGGACGACTTCCAGCAgGGCtacCGCAACCGCTTtcttgCcacgCCCTGgGag
gtgttcTTCcgcCcgcCgCTGGagcacCCGAAACCGCGCGTGCTGGGcaaccagaCcGcggtggtgaccggC
CcgccaggcgaggAaatccactGCGacccGcTACGGCcGGGTCAgGgtgcagTttcccctgGGAccGCGAGG
GCCagGGCGACGACAAGAGCAGTTGCTGGCTGCGCGTAG
Translation:
MFNPANQTHFSLSLDGLRHDLQVLEFSGHEGISRPYRFELELVSERAGLDLEALMHRPAFLAFTPQGQGVHG
LVYGAAQADAGKRLTRYRLTLVPQLAYLAQRSNQRIFQHLTVPQIVALVLEEHGILADAYRFQLGTRYPERE
YCVQYDESDLHFVQRLCAEEGIHFHFRHSAEAHLLVFGDDQTVFPRLGRPTAYVHDSGLVADEPVIKRFSLR
LASRTTRTTRRDYDFEKPRLLLEAGNRPAADAPAEPDLEDYDYPGRFVDRQRGKLLSQRALERHRADRRLGE
GVSDQPLLVSGHFLEIAEHPRAEWNDLWLLSEVFHEGKQPQVLEENVTFDTSASTDDFQQGYRNRFLATPWE
VFFRPPLEHPKPRVLGNQTAVVTGPPGEEIHCDPLRPGQGAVSPGTARARATTRAVAGCA*
AnnotationID:6362GeneID:6361
AnnotatorUID: danlee
Modification Date/Time: 2006-02-07 14:02:26
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58858.1| (AE016875) Rhs element Vgr protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 680

 Score =  576 bits (1485), Expect = e-164
 Identities = 273/393 (69%), Positives = 326/393 (82%), Gaps = 5/393 (1%)








 
Structural Features:






   
Genomic Context:






   
Comment:
PA14_18990 (GeneID 6361) and PA14_18980 (GeneID 6362) replaced by PA14_18985 (GeneID 7390)



















    ReferenceID:12544




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29830




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32058




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6361_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6361
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7970
                           PA3294_tr
                           translation of PA3294
                           693
                           56.85
                           57.72
                           278
                           2055.0
     

     
     
199027
                           gb|AAG06682.1|AE004751_8
                           (AE004751) hypothetical protein PA3294 [Pseudomonas aeruginosa PAO1]
                           693
                           56.85
                           57.72
                           278
                           2055.0
     

     
     
7969
                           PA3486_tr
                           translation of PA3486
                           813
                           48.46
                           49.20
                           398
                           2055.0
     

     
     
199026
                           gb|AAG06874.1|AE004769_7
                           (AE004769) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           813
                           48.46
                           49.20
                           398
                           2055.0
     

     
     
7971
                           PA5266_tr
                           translation of PA5266
                           701
                           42.93
                           47.78
                           291
                           1550.0
     

     






      

          
GC ORFID: 49363How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3312529Stop: 3313791

          
Length: 1263


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3486 translation of PA3486Homolog Bit Score 795.0

          
Other Homologs:  t_PA3486 translation of PA3486 (BLASTP 795), t_PA3294 translation of PA3294 (BLASTP 795), t_PA5266 translation of PA5266 (BLASTP 601), t_PA5090 translation of PA5090 (BLASTP 547), psyr_15may02_Scaffold4_revised_gene5753 related to: gi|15598490|ref|NP_251984.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa] pir||G83234 hypothetical protein PA3294 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG06682.1|AE004751_8 (AE004751) hypothetical protein [Pseudomonas-TRUNCATED- (BLASTP 156)

          
GC ORF Sequence

           
ATGTTCAACCCGGCCAACCAGACCCACTTCAGCCTCAGCCTCGACGGCCTCCGTCACGACCTGCAGGTTCTC 
GAATTCAGCGGCCACGAAGGCATCAGCCGGCCCTACCGCTTCGAACTCGAACTGGTCAGCGAGCGCGCCGGC 
CTCGACCTCGAAGCGCTCATGCACCGACCCGCCTTCCTCGCCTTCACCCCGCAGGGCCAGGGCGTCCACGGC 
CTGGTCTACGGCGCCGCCCAGGCCGACGCGGGCAAGCGCCTGACCCGCTATCGCCTCACCCTCGTGCCGCAA 
CTGGCCTACCTCGCGCAGCGCAGCAACCAGCGGATCTTCCAGCACCTCACGGTGCCGCAGATCGTCGCCCTG 
GTCCTCGAGGAGCACGGCATCCTCGCCGACGCCTACCGCTTCCAGCTCGGCACCCGGTATCCCGAGCGCGAA 
TACTGCGTGCAGTACGACGAAAGCGACCTGCATTTCGTCCAGCGCCTCTGTGCCGAAGAGGGCATCCATTTC 
CATTTCCGGCACAGCGCCGAGGCGCACCTGCTGGTGTTCGGCGACGACCAGACGGTGTTCCCCCGCCTGGGC 
CGTCCCACCGCCTACGTGCACGACAGCGGGCTGGTCGCCGACGAACCGGTGATCAAGCGCTTCAGCCTGCGC 
CTGGCCAGCCGCACCACGCGCACCACCCGCCGCGACTACGACTTCGAGAAGCCGCGGCTGCTGCTGGAGGCC 
GGCAACCGCCCCGCTGCCGACGCCCCGGCCGAGCCGGACCTGGAGGACTACGACTACCCCGGTCGCTTCGTC 
GATCGCCAGCGCGGCAAGCTGCTCAGCCAGCGCGCCCTGGAGCGCCACCGCGCCGACCGGCGCCTGGGCGAA 
GGGGTCAGCGACCAGCCGCTGCTGGTCAGCGGGCACTTCCTGGAGATCGCCGAGCACCCGCGCGCGGAGTGG 
AACGACCTGTGGCTGCTCAGCGAAGTCTTCCAcGAaGGcaagCAGCCGcAggTGCTGGAagagaACGTTACC 
ttcGAcACGTcggCcaGCACGGACGACTTCCAGCAgGGCtacCGCAACCGCTTtcttgCcacgCCCTGgGag 
gtgttcTTCcgcCcgcCgCTGGagcacCCGAAACCGCGCGTGCTGGGcaaccagaCcGcggtggtgaccggC 
CcgccaggcgaggAaatccactGCGacccGcTACGGCcGGGTCAgGgtgcagTttcccctgGGAccGCGAGG 
GCCagGGCGACGACAAGAGCAGTTGCTGGCTGCGCGTAG