ViewGene
Locus Name:
GeneID:
Location:

GeneID:6358
TrivialName: PA14_19060
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19060
PAO1 Ortholog Locus:
Sequence Length:675
Protein Length:224
Start: 1646446
Stop: 1647121
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
GeneID6358 (PA14_19060) and GeneID6356 (PA14_19080) replaced by GeneID7417 (PA14_19065). Homology: gb|AAG06869.1|AE004769_2 (AE004769) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 206/206 (100%), Positives = 206/206 (100%)
Sequence:
ATGTCCGCTATCACTCGCCAAACGGTGGAAGCCACCCTCCGCCAGTACCAGGACCCCTATCTGAACCAGGAC
CCCGTCAGCGCCGGCTGCCTGCGCGAGGTGGAGATCCAGGGCGACCGCGTGCGGGTGCGCCTGGAACTGGGG
TACGCCGCCGGGCTGTTCAGAAACGGCCTGGCGCAAACCCTGCAAATGGCCCTGGAGGCGCTCGACGGCGTC
GCTCGCGCCGAGGTCCGGGTCGACTGCGTGATCCAGCCGCACAAGGCACAGCCGCAGGTCGAGGTGATGGGC
AACGTGAAGAACATCGTCGCGGTGGCTTCCGGCAAGGGCGGCGTCGGCAAGTCCACCACCGCCGCCAACCTG
GCCCTGGCCTTGGCCCGCGAGGGTGCGCGGGTGGGCATCCTCGACGCGGACATCTACGGACCCAGCCAGGGC
ATCATGTTCggCCTGCCGgAaggcACCCGGCCGAAGGTCCGTGAGCAGAAGTGGTTCGAGCCCCTGGAGGCG
CACGGGGTGCagGTGATGTCGATGGCCTTCCTCACCGACGACAGCACGCCGGTGGTCTGGCGCGGGCCGATG
GTCTCCGGCGCCCTGATCCagCTGATCACCCAGACCGCCTGGACAACCTCGACTACCTGGTGGTGGACATGC
CGCCGGGCACCGGCGACATCCAGCTGA
Translation:
MSAITRQTVEATLRQYQDPYLNQDPVSAGCLREVEIQGDRVRVRLELGYAAGLFRNGLAQTLQMALEALDGV
ARAEVRVDCVIQPHKAQPQVEVMGNVKNIVAVASGKGGVGKSTTAANLALALAREGARVGILDADIYGPSQG
IMFGLPEGTRPKVREQKWFEPLEAHGVQVMSMAFLTDDSTPVVWRGPMVSGALIQLITQTAWTTSTTWWWTC
RRAPATSS*
AnnotationID:6359GeneID:6358
AnnotatorUID: danlee
Modification Date/Time: 2006-03-11 16:04:22
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0489
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAN66723.1|AE016300_8 (AE016778) ATP-binding protein, Mrp/Nbp35 family [Pseudomonas
           putida KT2440]
          Length = 364

 Score =  328 bits (842), Expect = 1e-89
 Identities = 157/206 (76%), Positives = 183/206 (88%)

>emb|CAD16086.1| (AL646069) PROBABLE MRP PROTEIN ATP-BINDING [Ralstonia
           solanacearum]
          Length = 362

 Score =  179 bits (453), Expect = 1e-44
 Identities = 102/206 (49%), Positives = 129/206 (62%), Gaps = 3/206 (1%)








 
Structural Features:
COG0489, Mrp, ATPases involved in chromosome partitioning 
[Cell division and chromosome partitioning]
CD-Length = 265 residues, only  62.3% aligned
Score =  127 bits (320), Expect = 1e-30
Identities = 60/169 (35%), Positives = 85/169 (50%), Gaps = 6/169 (3%)






   
Genomic Context:






   
Comment:
GeneID6358 (PA14_19060) and GeneID6356 (PA14_19080) replaced by GeneID7417 (PA14_19065).


















    ReferenceID:12538




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29824




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32065




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6358_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6358
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7968
                           PA3481_tr
                           translation of PA3481
                           366
                           56.83
                           57.10
                           144
                           1038.0
     

     
     
198989
                           gb|AAG06869.1|AE004769_2
                           (AE004769) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           366
                           56.83
                           57.10
                           144
                           1038.0
     

     
     
198990
                           gb|AAN66723.1|AE016300_8
                           (AE016778) ATP-binding protein, Mrp/Nbp35 family [Pseudomonas putida KT2440]
                           364
                           43.95
                           51.64
                           140
                           835.0
     

     
     
198991
                           gb|AAO57602.1|
                           (AE016870) ParA family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           366
                           42.62
                           48.90
                           144
                           808.0
     

     
     
198992
                           gb|AAC45998.1|
                           (U62986) ATPase [Pseudomonas fragi]
                           347
                           34.58
                           40.05
                           183
                           621.0
     

     






      

          
GC ORFID: 49360How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3307486Stop: 3306812

          
Length: 675


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3481 translation of PA3481Homolog Bit Score 407.0

          
Other Homologs:  t_PA3481 translation of PA3481 (BLASTP 407), psyr_15may02_Scaffold5_revised_gene6273 related to: gi|15598677|ref|NP_252171.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa] pir||B83210 conserved hypothetical protein PA3481 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG06869.1|AE004769_2 (AE004769) conserved hyp-TRUNCATED- (BLASTP 319)

          
GC ORF Sequence

           
ATGTCCGCTATCACTCGCCAAACGGTGGAAGCCACCCTCCGCCAGTACCAGGACCCCTATCTGAACCAGGAC 
CCCGTCAGCGCCGGCTGCCTGCGCGAGGTGGAGATCCAGGGCGACCGCGTGCGGGTGCGCCTGGAACTGGGG 
TACGCCGCCGGGCTGTTCAGAAACGGCCTGGCGCAAACCCTGCAAATGGCCCTGGAGGCGCTCGACGGCGTC 
GCTCGCGCCGAGGTCCGGGTCGACTGCGTGATCCAGCCGCACAAGGCACAGCCGCAGGTCGAGGTGATGGGC 
AACGTGAAGAACATCGTCGCGGTGGCTTCCGGCAAGGGCGGCGTCGGCAAGTCCACCACCGCCGCCAACCTG 
GCCCTGGCCTTGGCCCGCGAGGGTGCGCGGGTGGGCATCCTCGACGCGGACATCTACGGACCCAGCCAGGGC 
ATCATGTTCggCCTGCCGgAaggcACCCGGCCGAAGGTCCGTGAGCAGAAGTGGTTCGAGCCCCTGGAGGCG 
CACGGGGTGCagGTGATGTCGATGGCCTTCCTCACCGACGACAGCACGCCGGTGGTCTGGCGCGGGCCGATG 
GTCTCCGGCGCCCTGATCCagCTGATCACCCAGACCGCCTGGACAACCTCGACTACCTGGTGGTGGACATGC 
CGCCGGGCACCGGCGACATCCAGCTGA