ViewGene
Locus Name:
GeneID:
Location:

GeneID:6357
TrivialName: PA14_19070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19070
PAO1 Ortholog Locus:
Sequence Length:753
Protein Length:250
Start: 1647612
Stop: 1646859
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
Homology: emb|CAB36606.1| (AL939126) putative secreted protein [Streptomyces coelicolor A3(2)]
Identities = 37/117 (31%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Sequence:
ATGATCGCGAATCTtACCGGGGCCGCCGCCCCAGGGCAAAGGCAGCCGTcGCCGACGGCTGCCccgAGCGCC
TCAGTCGTCGCTGATGCTGATGTTCGGCAGGCCGACGCTGGCCCGCTCGCTGAGAACGATGCGCGCGCCGAC
ATGGCGGGCGATTTCCTGGTAGAGCATCGCCAGTTGGCTTTCCGGGTCGGCGATCACCGTCGGCCGGCCGCT
GTCGGCCTGGGTGCGGATGGCGATCGACAGCGGCATGGACGCCAGCAGCTCGACGCCGAACTGCGCCGCCAG
CTTCTCGCCGCCGCCCTCGCCGAACAGGTGCTCGGCATGGCCGCAGTTGGAGCAGATGTGCACCGCCATGTT
CTCCACCACGCCGAGCACCGGGATGTTCACCTTGCGGAACATCTCCACGCCCTTCTTCGCGTCGAGCAGCGC
CAGGTCCTGCGGGGTGGTGACGATCACCGCGCCGGCCACCGGCACcttCTGCGCCAGGGTCAGCTGGATGTC
GCCGGTGCCCGGCGGCATGTCCACCACCAGGTAGTCGAGGTTGTCCAGGCGGTCTGGGTGATCAGctGGATC
AGGGCGCCGGAGACCATCGGCCCGCGCCAGACCACCGGCGTGCTGTCGTCGGTGAGGAAGGCCATCGACATC
ACctGCACCCCGTGCGCCTCCAGGGGCTCGAACCACTTCTGCTCACGGACCTTCGGCCGGGTgcctTcCGGC
AGGccGAACATGATGCCCTGGCTGGGTCCGTAG
Translation:
MIANLTGAAAPGQRQPSPTAAPSASVVADADVRQADAGPLAENDARADMAGDFLVEHRQLAFRVGDHRRPAA
VGLGADGDRQRHGRQQLDAELRRQLLAAALAEQVLGMAAVGADVHRHVLHHAEHRDVHLAEHLHALLRVEQR
QVLRGGDDHRAGHRHLLRQGQLDVAGARRHVHHQVVEVVQAVWVISWIRAPETIGPRQTTGVLSSVRKAIDI
TCTPCASRGSNHFCSRTFGRVPSGRPNMMPWLGP*
AnnotationID:6358GeneID:6357
AnnotatorUID: diggins
Modification Date/Time: 2004-05-12 13:01:08
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
no data found via CDD Search






   
Genomic Context:






   
Comment:


















    ReferenceID:12536




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29822




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49359How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3306321Stop: 3307073

          
Length: 753


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGATCGCGAATCTtACCGGGGCCGCCGCCCCAGGGCAAAGGCAGCCGTcGCCGACGGCTGCCccgAGCGCC 
TCAGTCGTCGCTGATGCTGATGTTCGGCAGGCCGACGCTGGCCCGCTCGCTGAGAACGATGCGCGCGCCGAC 
ATGGCGGGCGATTTCCTGGTAGAGCATCGCCAGTTGGCTTTCCGGGTCGGCGATCACCGTCGGCCGGCCGCT 
GTCGGCCTGGGTGCGGATGGCGATCGACAGCGGCATGGACGCCAGCAGCTCGACGCCGAACTGCGCCGCCAG 
CTTCTCGCCGCCGCCCTCGCCGAACAGGTGCTCGGCATGGCCGCAGTTGGAGCAGATGTGCACCGCCATGTT 
CTCCACCACGCCGAGCACCGGGATGTTCACCTTGCGGAACATCTCCACGCCCTTCTTCGCGTCGAGCAGCGC 
CAGGTCCTGCGGGGTGGTGACGATCACCGCGCCGGCCACCGGCACcttCTGCGCCAGGGTCAGCTGGATGTC 
GCCGGTGCCCGGCGGCATGTCCACCACCAGGTAGTCGAGGTTGTCCAGGCGGTCTGGGTGATCAGctGGATC 
AGGGCGCCGGAGACCATCGGCCCGCGCCAGACCACCGGCGTGCTGTCGTCGGTGAGGAAGGCCATCGACATC 
ACctGCACCCCGTGCGCCTCCAGGGGCTCGAACCACTTCTGCTCACGGACCTTCGGCCGGGTgcctTcCGGC 
AGGccGAACATGATGCCCTGGCTGGGTCCGTAG