ViewGene
Locus Name:
GeneID:
Location:

GeneID:6356
TrivialName: PA14_19080
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19080
PAO1 Ortholog Locus:
Sequence Length:459
Protein Length:152
Start: 1647082
Stop: 1647540
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
GeneID6358 (PA14_19060) and GeneID6356 (PA14_19080) replaced by GeneID7417 (PA14_19065). Homology: gb|AAG06869.1|AE004769_2 (AE004769) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 151/152 (99%), Positives = 152/152 (100%)
Sequence:
GTGGTGGACATGCCGCCGGGCACCGGCGACATCCAGCTGACCCTGGCGCAGaagGTGCCGGTGGCCGGCGCG
GTGATCGTCACCACCCCGCAGGACCTGGCGCTGCTCGACGCGAAGAAGGGCGTGGAGATGTTCCGCAAGGTG
AACATCCCGGTGCTCGGCGTGGTGGAGAACATGGCGGTGCACATCTGCTCCAACTGCGGCCATGCCGAGCAC
CTGTTCGGCGAGGGCGGCGGCGAGAAGCTGGCGGCGCAGTTCGGCGTCGAGCTGCTGGCGTCCATGCCGCTG
TCGATCGCCATCCGCACCCAGGCCGACAGCGGCCGGCCGACGGTGATCGCCGACCCGGAAAGCCAACTGGCG
ATGCTCTACCAGGAAATCGCCCGCCATGTCGGCGCGCGCATCGTTCTCAGCGAGCGGGCCAGCGTCGGCCTG
CCGAACATCAGCATCAGCGACGACTGA
Translation:
MVDMPPGTGDIQLTLAQKVPVAGAVIVTTPQDLALLDAKKGVEMFRKVNIPVLGVVENMAVHICSNCGHAEH
LFGEGGGEKLAAQFGVELLASMPLSIAIRTQADSGRPTVIADPESQLAMLYQEIARHVGARIVLSERASVGL
PNISISDD*
AnnotationID:6357GeneID:6356
AnnotatorUID: danlee
Modification Date/Time: 2006-03-11 16:04:56
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:MRP ATPase homolog
Functional Category Confidence Code:5
COGs:COG0489
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAN66723.1|AE016300_8 (AE016778) ATP-binding protein, Mrp/Nbp35 family [Pseudomonas
           putida KT2440]
          Length = 364

 Score =  258 bits (658), Expect = 1e-68
 Identities = 125/152 (82%), Positives = 143/152 (94%)

>emb|CAD16086.1| (AL646069) PROBABLE MRP PROTEIN ATP-BINDING [Ralstonia
           solanacearum]
          Length = 362

 Score =  201 bits (510), Expect = 1e-51
 Identities = 94/140 (67%), Positives = 119/140 (85%), Gaps = 2/140 (1%)

>gb|AAN55647.1|AE015703_9 (AE015703) ATP-binding protein, Mrp/Nbp35 family [Shewanella
           oneidensis MR-1]
          Length = 371

 Score =  195 bits (495), Expect = 8e-50
 Identities = 96/152 (63%), Positives = 120/152 (78%), Gaps = 2/152 (1%)








 
Structural Features:
COG0489, Mrp, ATPases involved in chromosome partitioning 
[Cell division and chromosome partitioning]
CD-Length = 265 residues, only  34.3% aligned
Score = 93.2 bits (231), Expect = 1e-20
Identities = 51/100 (51%), Positives = 62/100 (62%), Gaps = 9/100 (9%)






   
Genomic Context:






   
Comment:
GeneID6358 (PA14_19060) and GeneID6356 (PA14_19080) replaced by GeneID7417 (PA14_19065).


















    ReferenceID:16144




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29820




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32070




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6356_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6356
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198934
                           gb|AAD01696.1|
                           (AF021919) MRP ATPase homolog [Actinobacillus pleuropneumoniae]
                           153
                           54.24
                           72.54
                           4
                           436.0
     

     
     
198933
                           gb|AAD01903.1|
                           (AF030511) MRP ATPase homolog [Actinobacillus pleuropneumoniae]
                           153
                           54.24
                           71.89
                           4
                           436.0
     

     
     
7967
                           PA3481_tr
                           translation of PA3481
                           364
                           41.75
                           41.75
                           212
                           760.0
     

     
     
198903
                           gb|AAG06869.1|AE004769_2
                           (AE004769) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           364
                           41.75
                           41.75
                           212
                           760.0
     

     
     
198906
                           gb|AAC45998.1|
                           (U62986) ATPase [Pseudomonas fragi]
                           304
                           35.52
                           40.46
                           169
                           569.0
     

     






      

          
GC ORFID: 49358How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3306851Stop: 3306393

          
Length: 459


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3481 translation of PA3481Homolog Bit Score 297.0

          
Other Homologs:  t_PA3481 translation of PA3481 (BLASTP 297), psyr_15may02_Scaffold5_revised_gene6273 related to: gi|15598677|ref|NP_252171.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa] pir||B83210 conserved hypothetical protein PA3481 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG06869.1|AE004769_2 (AE004769) conserved hyp-TRUNCATED- (BLASTP 262)

          
GC ORF Sequence

           
GTGGTGGACATGCCGCCGGGCACCGGCGACATCCAGCTGACCCTGGCGCAGaagGTGCCGGTGGCCGGCGCG 
GTGATCGTCACCACCCCGCAGGACCTGGCGCTGCTCGACGCGAAGAAGGGCGTGGAGATGTTCCGCAAGGTG 
AACATCCCGGTGCTCGGCGTGGTGGAGAACATGGCGGTGCACATCTGCTCCAACTGCGGCCATGCCGAGCAC 
CTGTTCGGCGAGGGCGGCGGCGAGAAGCTGGCGGCGCAGTTCGGCGTCGAGCTGCTGGCGTCCATGCCGCTG 
TCGATCGCCATCCGCACCCAGGCCGACAGCGGCCGGCCGACGGTGATCGCCGACCCGGAAAGCCAACTGGCG 
ATGCTCTACCAGGAAATCGCCCGCCATGTCGGCGCGCGCATCGTTCTCAGCGAGCGGGCCAGCGTCGGCCTG 
CCGAACATCAGCATCAGCGACGACTGA