ViewGene
Locus Name:
GeneID:
Location:

GeneID:6354
TrivialName: PA14_19200
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19200
PAO1 Ortholog Locus:
Sequence Length:282
Protein Length:93
Start: 1658484
Stop: 1658203
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
GID6354 (PA14_19200) replaced by GID7427 (PA14_19205). Homology: gb|AAG06858.1|AE004768_3 (AE004768) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 93/93 (100%), Positives = 93/93 (100%)
Sequence:
ATGGGCGCCTCGACCTTCGAGCACCTCGGCAGCTTCCAGGCGCCGGCGGCCAACGAGGCGAACACCCGCGTC
GATGCCGATATCTACGTCGCCCGCTTGCCCCACGCCGTCTGTGCGCAGGCGGAGCTGGAGGAACTGGCCTGG
CTGGTCCCCGGCCAAGCGCAGCCGGACAATCTCGCGCCGCTGCTGCGCGATCATGTCCTGCCGGCCCTGGCG
CGGCGCGCGGCGGAAAACCCGGAAACCCAGGCCGAACACCGGACGCGCCCCGATCATGTGCGCTGA
Translation:
MGASTFEHLGSFQAPAANEANTRVDADIYVARLPHAVCAQAELEELAWLVPGQAQPDNLAPLLRDHVLPALA
RRAAENPETQAEHRTRPDHVR*
AnnotationID:6355GeneID:6354
AnnotatorUID: danlee
Modification Date/Time: 2006-03-20 13:01:45
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66687.1|AE016297_1 (AE016778) MutT/nudix family protein [Pseudomonas putida KT2440]
          Length = 137

 Score = 58.9 bits (141), Expect = 6e-09
 Identities = 34/72 (47%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

>dbj|BAC50394.1| (AP005953) NTP pyrophosphohydrolase MutT family [Bradyrhizobium
           japonicum USDA 110]
          Length = 132

 Score = 58.5 bits (140), Expect = 7e-09
 Identities = 28/66 (42%), Positives = 40/66 (60%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:
GID6354 (PA14_19200) replaced by GID7427 (PA14_19205).


















    ReferenceID:12530




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29816




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6354
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7966
                           PA3470_tr
                           translation of PA3470
                           152
                           61.18
                           61.18
                           59
                           485.0
     

     
     
198902
                           gb|AAG06858.1|AE004768_3
                           (AE004768) hypothetical protein PA3470 [Pseudomonas aeruginosa PAO1]
                           152
                           61.18
                           61.18
                           59
                           485.0
     

     






      

          
GC ORFID: 49356How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3295449Stop: 3295730

          
Length: 282


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3470 translation of PA3470Homolog Bit Score 191.0

          
Other Homologs:  t_PA3470 translation of PA3470 (BLASTP 191)

          
GC ORF Sequence

           
ATGGGCGCCTCGACCTTCGAGCACCTCGGCAGCTTCCAGGCGCCGGCGGCCAACGAGGCGAACACCCGCGTC 
GATGCCGATATCTACGTCGCCCGCTTGCCCCACGCCGTCTGTGCGCAGGCGGAGCTGGAGGAACTGGCCTGG 
CTGGTCCCCGGCCAAGCGCAGCCGGACAATCTCGCGCCGCTGCTGCGCGATCATGTCCTGCCGGCCCTGGCG 
CGGCGCGCGGCGGAAAACCCGGAAACCCAGGCCGAACACCGGACGCGCCCCGATCATGTGCGCTGA