ViewGene

Locus Name:
GeneID:
Location:

GeneID:6349
TrivialName: PA14_19300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19300
PAO1 Ortholog Locus:
Sequence Length:1965
Protein Length:654
Start: 1665616
Stop: 1663652
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens]
Identities = 175/632 (27%), Positives = 210/632 (33%), Gaps = 144/632 (22%)
Sequence:
ATGCGGGACACCCAGGGCACTGTCCTGCCTGGACATCGGAACTCTCCGATAGCGCCATCGGACCAATGTCTA
TCCACGCCGGGCCGGCCCCATGACCGCCATCAATGGCGCCCAGGCGCCAGGCGGCTAGACTTTCCCGACATC
AGGCACGCTGATACAAGGCACCCATCTGATGCTCCAGTCCGTTTCGCCCAAGCACGACCTGCCCCTCAAACC
CGAAGGCCAAGCGGCCAAGCCAGAACGCACCGGCACCTGGGCGCCGTTCTCGATCCAGGCCTTCCGCATCAT
CTGGATCTGCAACCTGTTCGCCAACCTCGGCACCTGGGCCCAGTCGGTGGCCGCCGCCTGGGTGGTCACCGA
CGCCCACGCCAGCCCGCTGATGGTGGCGATGATCCAGGTCGCCGCGGCGCTGCCGCTGGTGCTGCTGTCGAT
CCTCTCCGGGGTCATCGCCGACAACCACGACCGGCGCAAGATCATGCTCTGGGGACTCAGCTTCGAGATGAC
CGGGGCGATGTTCGCCACCCTGCTGGCCTTCCTCGGCTACCTCGACCCGGTGCTGCTGATCATCTCCATCCT
CTGGATCTCCCTCGGCGGGTCGGTGACCATCCCGGCCTGGCAGGCGGCGGTCAACGAGCAGGTGCCGGCGCG
CATGGTCAGCGACGCGGTGCTGCTCAACAGCGTCAACTACAACGTCGCCCGCGCCGCCGGCCCGGCCCTCGG
CGGCCTGTTGCTGAGCGCGGTGGGACCGGCCTGGGTGTTCCTGTTCAACAGCTTCTGCTACATGGCCCTGAT
CTGGGCGATCTGGCAGTGGCGGCGCGACGTGCCCAAGCGCAGCCTGCCGCCGGAAGGCATCCTCGAAGGCGT
CACCGCGGCGCTGCGCTTCACCCAGTACTCAACCGTCACCCGCCTGGTGATGATGCGCTCCTTCGCCTTCGG
CCTCTCCGCCAGCGCGGTCTGGGCCCTGCTGCCGCTGCTGGCGCACCGCAACCCGGACGGCGACGCGGCGAT
CTACGGCTACATGCTCGGCGCCCTCGGCCTCGGCGCGATCCTCGGCAGCACCCAGGTCTCGCGCCTGCGCCA
GCGGATCGGCAGCAGCCGGCTGATCAGTCTGGCCGGCTTCACCCTGGCGCTGATCCTGCTGACCCTCGGCCT
GGTAGACAACCTCTGGGTCCTGTTCCCGGTGCTGATCCTCGGCGGCGGCTGCTGGATCGGCGCCCTCGCCAC
CTACAACTCGGCGGTGCAGATCCTCGTCCCCGACTGGATCAAGGCGCGCGCCCTGGCGTTGTACCAGACCGC
GCTGTACGGTGGCCTGGCGCTGGGTTCGTTCCTCTGGGGCCATCTCGCCGAGACCATGACCGTGCACGGTGC
GCTGCTGGCCGCCGGCTGCCTGCTGCTGGCCTCGGTGATCCTGCTGTACAACTCGCGCCTGCCGGAAATGGA
CGCAGCCAGTATTTCCCGCGCGCCGGCGAGCATGCCCGGGCAGCCGAGCTTCGTCTTCAACACGCGGCGGGG
CATGGTGCTGGTCTCCATCGAATACCGGATTCCCGCCGAGCGCACCCGCGACTTCGTTCGCGCCGCCCAGCC
GCTGCGCCGCCTGCGCCTGCGCAACGGCGCGGAGCGCTGGTCGCTGTTCCGCGACGTGAGCAACCCGGAGGT
CTGGCAGGAACTGTTCCTGGTGGACAACTGGATCCAGCACCTGCGCATGCTCGACCGCATGACCCTGGCCGA
CAAGATCGTCATCGACAACGTCACCGCCCTGCATGCCGGCGACGGTCCGCCGCAGATCCGCCATTGCGTGAG
CTACGAGGCCAGCAGCTACGATACGCCGCTGGTGAAGAGCGCCACGCCGCCGGGCAACGACGAGGCGGGCGC
GACGGCGGGGAGTTGAGAACGGGGCCTGGCAGTCCCCTGGGGCGGACAGCGCCAGCGGCGTTATCCGCCATC
CAACGCCGGCGCGGCGGATAA
Translation:
MRDTQGTVLPGHRNSPIAPSDQCLSTPGRPHDRHQWRPGARRLDFPDIRHADTRHPSDAPVRFAQARPAPQT
RRPSGQARTHRHLGAVLDPGLPHHLDLQPVRQPRHLGPVGGRRLGGHRRPRQPADGGDDPGRRGAAAGAAVD
PLRGHRRQPRPAQDHALGTQLRDDRGDVRHPAGLPRLPRPGAADHLHPLDLPRRVGDHPGLAGGGQRAGAGA
HGQRRGAAQQRQLQRRPRRRPGPRRPVAERGGTGLGVPVQQLLLHGPDLGDLAVAARRAQAQPAAGRHPRRR
HRGAALHPVLNRHPPGDDALLRLRPLRQRGLGPAAAAGAPQPGRRRGDLRLHARRPRPRRDPRQHPGLAPAP
ADRQQPADQSGRLHPGADPADPRPGRQPLGPVPGADPRRRLLDRRPRHLQLGGADPRPRLDQGARPGVVPDR
AVRWPGAGFVPLGPSRRDHDRARCAAGRRLPAAGLGDPAVQLAPAGNGRSQYFPRAGEHARAAELRLQHAAG
HGAGLHRIPDSRRAHPRLRSRRPAAAPPAPAQRRGALVAVPRREQPGGLAGTVPGGQLDPAPAHARPHDPGR
QDRHRQRHRPACRRRSAADPPLRELRGQQLRYAAGEERHAAGQRRGGRDGGELRTGPGSPLGRTAPAALSAI
QRRRGG*
AnnotationID:6350GeneID:6349
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 09:09:29
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:12521
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29806
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49351How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 3288316Stop: 3290280
Length: 1965
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCGGGACACCCAGGGCACTGTCCTGCCTGGACATCGGAACTCTCCGATAGCGCCATCGGACCAATGTCTA
TCCACGCCGGGCCGGCCCCATGACCGCCATCAATGGCGCCCAGGCGCCAGGCGGCTAGACTTTCCCGACATC
AGGCACGCTGATACAAGGCACCCATCTGATGCTCCAGTCCGTTTCGCCCAAGCACGACCTGCCCCTCAAACC
CGAAGGCCAAGCGGCCAAGCCAGAACGCACCGGCACCTGGGCGCCGTTCTCGATCCAGGCCTTCCGCATCAT
CTGGATCTGCAACCTGTTCGCCAACCTCGGCACCTGGGCCCAGTCGGTGGCCGCCGCCTGGGTGGTCACCGA
CGCCCACGCCAGCCCGCTGATGGTGGCGATGATCCAGGTCGCCGCGGCGCTGCCGCTGGTGCTGCTGTCGAT
CCTCTCCGGGGTCATCGCCGACAACCACGACCGGCGCAAGATCATGCTCTGGGGACTCAGCTTCGAGATGAC
CGGGGCGATGTTCGCCACCCTGCTGGCCTTCCTCGGCTACCTCGACCCGGTGCTGCTGATCATCTCCATCCT
CTGGATCTCCCTCGGCGGGTCGGTGACCATCCCGGCCTGGCAGGCGGCGGTCAACGAGCAGGTGCCGGCGCG
CATGGTCAGCGACGCGGTGCTGCTCAACAGCGTCAACTACAACGTCGCCCGCGCCGCCGGCCCGGCCCTCGG
CGGCCTGTTGCTGAGCGCGGTGGGACCGGCCTGGGTGTTCCTGTTCAACAGCTTCTGCTACATGGCCCTGAT
CTGGGCGATCTGGCAGTGGCGGCGCGACGTGCCCAAGCGCAGCCTGCCGCCGGAAGGCATCCTCGAAGGCGT
CACCGCGGCGCTGCGCTTCACCCAGTACTCAACCGTCACCCGCCTGGTGATGATGCGCTCCTTCGCCTTCGG
CCTCTCCGCCAGCGCGGTCTGGGCCCTGCTGCCGCTGCTGGCGCACCGCAACCCGGACGGCGACGCGGCGAT
CTACGGCTACATGCTCGGCGCCCTCGGCCTCGGCGCGATCCTCGGCAGCACCCAGGTCTCGCGCCTGCGCCA
GCGGATCGGCAGCAGCCGGCTGATCAGTCTGGCCGGCTTCACCCTGGCGCTGATCCTGCTGACCCTCGGCCT
GGTAGACAACCTCTGGGTCCTGTTCCCGGTGCTGATCCTCGGCGGCGGCTGCTGGATCGGCGCCCTCGCCAC
CTACAACTCGGCGGTGCAGATCCTCGTCCCCGACTGGATCAAGGCGCGCGCCCTGGCGTTGTACCAGACCGC
GCTGTACGGTGGCCTGGCGCTGGGTTCGTTCCTCTGGGGCCATCTCGCCGAGACCATGACCGTGCACGGTGC
GCTGCTGGCCGCCGGCTGCCTGCTGCTGGCCTCGGTGATCCTGCTGTACAACTCGCGCCTGCCGGAAATGGA
CGCAGCCAGTATTTCCCGCGCGCCGGCGAGCATGCCCGGGCAGCCGAGCTTCGTCTTCAACACGCGGCGGGG
CATGGTGCTGGTCTCCATCGAATACCGGATTCCCGCCGAGCGCACCCGCGACTTCGTTCGCGCCGCCCAGCC
GCTGCGCCGCCTGCGCCTGCGCAACGGCGCGGAGCGCTGGTCGCTGTTCCGCGACGTGAGCAACCCGGAGGT
CTGGCAGGAACTGTTCCTGGTGGACAACTGGATCCAGCACCTGCGCATGCTCGACCGCATGACCCTGGCCGA
CAAGATCGTCATCGACAACGTCACCGCCCTGCATGCCGGCGACGGTCCGCCGCAGATCCGCCATTGCGTGAG
CTACGAGGCCAGCAGCTACGATACGCCGCTGGTGAAGAGCGCCACGCCGCCGGGCAACGACGAGGCGGGCGC
GACGGCGGGGAGTTGAGAACGGGGCCTGGCAGTCCCCTGGGGCGGACAGCGCCAGCGGCGTTATCCGCCATC
CAACGCCGGCGCGGCGGATAA