ViewGene
Locus Name:
GeneID:
Location:

GeneID:6347
TrivialName: PA14_19440
AnnotatorUID: diggins
Modification Date/Time:2006-04-23 19:07:13
LocusName:PA14_19440
PAO1 Ortholog Locus:
Sequence Length:861
Protein Length:286
Start: 1682659
Stop: 1681799
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
tTgcAgggcggcgCATcggcggatAACGCCGCTGGCGTTATTCGCCCTACCCGaCAGGcagCGCCGCCCACA
AAGTCACTgCGGGCCGTAGGACGAACAACCGCTCGCGGTTATCCGCCGGAACCTGCATGTCACCGATTGCGC
CCACCCGCGATATCACGCCCCTCCTTCGAGCCTGGCCAGGCGCTCCTCCAGCGCCGCCAGGCGCGTCTCCAG
CTCGGCGATCCGCGCTTCCGCATCGGCCGACAGAGCGGCCGGCGCGGCGCGTTCCGGGTCGCTGCCCATCGC
CTCCACGGCGGCCTCGAGGTCGGCCTGGCTGCCGAGCAGATGCATGTAGCGCTCCTCGCGCTGCCCGGCGCG
ACGCTCCAGGTGCACGGCCAGGCCACGGCCGGCGAGGCGTTCCAGGTGGTGGCGGATCTGCTCGACGTCGTC
GAAATCGTGCAGGCGGTTGCTGCGGGTGAGCAGTTCGCTGAGGGTCTGCGGACCACGCAGGAACAGCAGGCC
GAGCAGCGCCACCTGTGGCGCCACCAATTCCAGGCCCTTGCCCAGGGTGTGCTCCCAGCGGTCGGCGCGGCT
GCCCATCACCAGCCTGACCAGGCCGCGCCCCTCGAGCTGGCGCAGGCTCTGGCCGACCTGGCCGGGCGTGAG
GTTCATCACCGGATCGCGGCTGGTCTTCTGGTTGCAGGCCAGGACCAGGGCATTGAGGGTCAGCGGATAGGT
TTCCGGAGTGGTCGCCTGCTTCTCGACGAGGCTGCCGAGAATCCGTGCATCGACGGCGCTCAGCGGGTCGTC
GACGAACGGCGAGTTGGGCTCGGTGGACATCGCTACATCCCTATGCAAGGAAAAAGGCGCCTAGCCTAG
Translation:
MQGGASADNAAGVIRPTRQAAPPTKSLRAVGRTTARGYPPEPACHRLRPPAISRPSFEPGQALLQRRQARLQ
LGDPRFRIGRQSGRRGAFRVAAHRLHGGLEVGLAAEQMHVALLALPGATLQVHGQATAGEAFQVVADLLDVV
EIVQAVAAGEQFAEGLRTTQEQQAEQRHLWRHQFQALAQGVLPAVGAAAHHQPDQAAPLELAQALADLAGRE
VHHRIAAGLLVAGQDQGIEGQRIGFRSGRLLLDEAAENPCIDGAQRVVDERRVGLGGHRYIPMQGKRRLA*
AnnotationID:6348GeneID:6347
AnnotatorUID: diggins
Modification Date/Time: 2006-04-23 19:07:23
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:16135




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29802




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49349How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3271273Stop: 3272133

          
Length: 861


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
tTgcAgggcggcgCATcggcggatAACGCCGCTGGCGTTATTCGCCCTACCCGaCAGGcagCGCCGCCCACA 
AAGTCACTgCGGGCCGTAGGACGAACAACCGCTCGCGGTTATCCGCCGGAACCTGCATGTCACCGATTGCGC 
CCACCCGCGATATCACGCCCCTCCTTCGAGCCTGGCCAGGCGCTCCTCCAGCGCCGCCAGGCGCGTCTCCAG 
CTCGGCGATCCGCGCTTCCGCATCGGCCGACAGAGCGGCCGGCGCGGCGCGTTCCGGGTCGCTGCCCATCGC 
CTCCACGGCGGCCTCGAGGTCGGCCTGGCTGCCGAGCAGATGCATGTAGCGCTCCTCGCGCTGCCCGGCGCG 
ACGCTCCAGGTGCACGGCCAGGCCACGGCCGGCGAGGCGTTCCAGGTGGTGGCGGATCTGCTCGACGTCGTC 
GAAATCGTGCAGGCGGTTGCTGCGGGTGAGCAGTTCGCTGAGGGTCTGCGGACCACGCAGGAACAGCAGGCC 
GAGCAGCGCCACCTGTGGCGCCACCAATTCCAGGCCCTTGCCCAGGGTGTGCTCCCAGCGGTCGGCGCGGCT 
GCCCATCACCAGCCTGACCAGGCCGCGCCCCTCGAGCTGGCGCAGGCTCTGGCCGACCTGGCCGGGCGTGAG 
GTTCATCACCGGATCGCGGCTGGTCTTCTGGTTGCAGGCCAGGACCAGGGCATTGAGGGTCAGCGGATAGGT 
TTCCGGAGTGGTCGCCTGCTTCTCGACGAGGCTGCCGAGAATCCGTGCATCGACGGCGCTCAGCGGGTCGTC 
GACGAACGGCGAGTTGGGCTCGGTGGACATCGCTACATCCCTATGCAAGGAAAAAGGCGCCTAGCCTAG