ViewGene
Locus Name:
GeneID:
Location:

GeneID:6318
TrivialName: PA14_21170
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21170
PAO1 Ortholog Locus:
Sequence Length:612
Protein Length:203
Start: 1831018
Stop: 1830407
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
GID6318 (PA14_21170) replaced by GID7199 (PA14_21175). Homology: gb|AAG06701.1|AE004753_9 (AE004753) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 202/203 (99%), Positives = 202/203 (99%)
Sequence:
ATGGCCTGGCTGGGTgGCTTCACCTtcGTCCAGGCGCGGCTgAAgACcGGCAACGCCATCCCCCTGGTGCAG
CGCGAGCAGGACCAGCAGTTCACCAGCAAATTCATCACGGCCGATCCCCAAGTGAAATCCCTGCAGGACCTG
AAGGGCAAGACCTTCGCCTTCGGCTCGGTCTCCTCCACCTCGGGCAGCCTGATGCCGCGCTACTTCATGCAG
AAGGACGGCATCGTCCCCGAGCAGTTCTTCTCCCGCGTCGCCTACTCCGGCGCCCACGACGCCACCGCGGCC
TGGGTCCAGGCCGGCAAGGTCGACGCCGGCGTGCTGAACGCCTCGGTCTGGCAGAAGCTGGTGGACAGCGGC
AAGGTCGATACCGCCAAGGTCAAGGTCTTCGCCACCACGCCGACCTACTACGACTACAACTGGACCGTGCGC
GGCAACCTCGACCCGGCCCTGGCCGAGAAGATCAAGCAGGCCTTCCTCGCCCTCGACCCGGCGAAACCGGCC
GACAAGGAGATCCTCGACCTGCAGGCCGCCAGCCGCTTCATCGAGACCAATCCGGACAACTACAAGGGCATC
GAGGAGTCCGCACGCGCCGCCGGCCTGCTGAAGTGA
Translation:
MAWLGGFTFVQARLKTGNAIPLVQREQDQQFTSKFITADPQVKSLQDLKGKTFAFGSVSSTSGSLMPRYFMQ
KDGIVPEQFFSRVAYSGAHDATAAWVQAGKVDAGVLNASVWQKLVDSGKVDTAKVKVFATTPTYYDYNWTVR
GNLDPALAEKIKQAFLALDPAKPADKEILDLQAASRFIETNPDNYKGIEESARAAGLLK*
AnnotationID:6319GeneID:6318
AnnotatorUID: danlee
Modification Date/Time: 2006-03-20 13:01:32
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:
GID6318 (PA14_21170) replaced by GID7199 (PA14_21175)


















    ReferenceID:12468




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29748




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6318
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198890
                           gb|AAO54333.1|
                           (AE016858) phosphonate ABC transporter, periplasmic phosphonate-binding protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           283
                           60.77
                           64.66
                           80
                           884.0
     

     
     
7965
                           PA3313_tr
                           translation of PA3313
                           335
                           60.29
                           60.29
                           132
                           1037.0
     

     
     
198889
                           gb|AAG06701.1|AE004753_9
                           (AE004753) hypothetical protein PA3313 [Pseudomonas aeruginosa PAO1]
                           335
                           60.29
                           60.29
                           132
                           1037.0
     

     
     
198891
                           gb|AAN66449.1|AE016274_6
                           (AE016777) phosphate ABC transporter, periplasmic phosphate-binding protein, putative [Pseudomonas putida KT2440]
                           284
                           57.74
                           63.02
                           81
                           852.0
     

     
     
198892
                           emb|CAE20955.1|
                           (BX572097) Putative phosphonate binding protein for ABC transporter [Prochlorococcus marinus str. MIT 9313]
                           299
                           30.10
                           41.80
                           96
                           409.0
     

     






      

          
GC ORFID: 49320How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3122914Stop: 3123525

          
Length: 612


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3313 translation of PA3313Homolog Bit Score 404.0

          
Other Homologs:  t_PA3313 translation of PA3313 (BLASTP 404), psyr_15may02_Scaffold2_revised_gene3572 related to: gi|15598509|ref|NP_252003.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa] pir||D83232 hypothetical protein PA3313 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG06701.1|AE004753_9 (AE004753) hypothetical protein [Pseudomonas-TRUNCATED- (BLASTP 342)

          
GC ORF Sequence

           
ATGGCCTGGCTGGGTgGCTTCACCTtcGTCCAGGCGCGGCTgAAgACcGGCAACGCCATCCCCCTGGTGCAG 
CGCGAGCAGGACCAGCAGTTCACCAGCAAATTCATCACGGCCGATCCCCAAGTGAAATCCCTGCAGGACCTG 
AAGGGCAAGACCTTCGCCTTCGGCTCGGTCTCCTCCACCTCGGGCAGCCTGATGCCGCGCTACTTCATGCAG 
AAGGACGGCATCGTCCCCGAGCAGTTCTTCTCCCGCGTCGCCTACTCCGGCGCCCACGACGCCACCGCGGCC 
TGGGTCCAGGCCGGCAAGGTCGACGCCGGCGTGCTGAACGCCTCGGTCTGGCAGAAGCTGGTGGACAGCGGC 
AAGGTCGATACCGCCAAGGTCAAGGTCTTCGCCACCACGCCGACCTACTACGACTACAACTGGACCGTGCGC 
GGCAACCTCGACCCGGCCCTGGCCGAGAAGATCAAGCAGGCCTTCCTCGCCCTCGACCCGGCGAAACCGGCC 
GACAAGGAGATCCTCGACCTGCAGGCCGCCAGCCGCTTCATCGAGACCAATCCGGACAACTACAAGGGCATC 
GAGGAGTCCGCACGCGCCGCCGGCCTGCTGAAGTGA