ViewGene
Locus Name:
GeneID:
Location:

GeneID:6302
TrivialName: PA14_22070
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22070
PAO1 Ortholog Locus:
Sequence Length:573
Protein Length:190
Start: 1919435
Stop: 1918863
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Replaced by GID7360 (PA14_22075). Homology: gb|AAG06628.1|AE004747_1 (AE004747) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 189/190 (99%), Positives = 189/190 (99%)
Sequence:
ATGACCGCCGCCCACGGCATCATCCACAGCGAGATGCCGGAACAGGTGGAAGGCGCGATGCGTGGCTTCCAG
CTGTGGGTCAACCTGCCGGCGAAGAACAAGCTGGCCCCAGCCGGCTATCGCGATATCGAGCCGGAAGACGTG
CCACGCCTGGAAACCGCCGGAGGCGTGAAGGTCACGGTGATCGCCGGTCGCTTCGACGACGGCCAGGCGCAG
CAGATCGGCGCCGTGGAAAGGCCGGACACCGAGCCGCACTACTACGACCTGCAACTGCCTGCCGGCGGCCGC
ATCGCCCCGCGCCTGCCGGACGGCCATCGCGTGCTGCTGTACGTCTACGAAGGCAGCCTGACGGTGGAAGGC
GAACGCCCGGTGGAAATCGCCACCAATCGCCTGGCTCGGCTGTCCGAAGAAGGGGAACTGAGCCTGCGCAGC
GAAGCCGGCGCCCGGGTACTGGTGCTCGCCGGCAAGCCGTTGCGCGAGCCGATCGTCCAGTACGGTCCGTTC
GTGATGAACAGCCGCGAGGAAATCGAGCAGGCGCTACGCGACTATCGCGACGGTGTCCTGGCCGTCTGA
Translation:
MTAAHGIIHSEMPEQVEGAMRGFQLWVNLPAKNKLAPAGYRDIEPEDVPRLETAGGVKVTVIAGRFDDGQAQ
QIGAVERPDTEPHYYDLQLPAGGRIAPRLPDGHRVLLYVYEGSLTVEGERPVEIATNRLARLSEEGELSLRS
EAGARVLVLAGKPLREPIVQYGPFVMNSREEIEQALRDYRDGVLAV*
AnnotationID:6303GeneID:6302
AnnotatorUID: danlee
Modification Date/Time: 2006-03-20 13:01:56
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05726
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>emb|CAD14069.1| (AL646059) PROBABLE PIRIN-LIKE PROTEIN [Ralstonia solanacearum]
          Length = 298

 Score =  164 bits (414), Expect = 3e-40
 Identities = 93/199 (46%), Positives = 122/199 (61%), Gaps = 14/199 (7%)

>gb|AAM41989.1| (AE012384) pirin [Xanthomonas campestris pv. campestris str. ATCC
           33913]
          Length = 286

 Score =  154 bits (388), Expect = 4e-37
 Identities = 83/188 (44%), Positives = 117/188 (62%), Gaps = 6/188 (3%)

>gb|AAF96865.1| (AE004423) pirin-related protein [Vibrio cholerae]
          Length = 282

 Score =  140 bits (354), Expect = 3e-33
 Identities = 78/186 (41%), Positives = 107/186 (57%), Gaps = 3/186 (1%)








 
Structural Features:
pfam05726, Pirin_C, Pirin C-terminal region. This region is found 
the C-terminal half of the Pirin protein.
CD-Length = 103 residues,  97.1% aligned
Score =  117 bits (294), Expect = 1e-27
Identities = 51/102 (50%), Positives = 66/102 (64%), Gaps = 3/102 (2%)








   
Genomic Context:






   
Comment:
Replaced by GID7360 (PA14_22075).


















    ReferenceID:12441




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29716




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32302




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6302_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6302
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7964
                           PA3240_tr
                           translation of PA3240
                           285
                           66.31
                           66.31
                           95
                           970.0
     

     
     
198878
                           gb|AAG06628.1|AE004747_1
                           (AE004747) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           285
                           66.31
                           66.31
                           95
                           970.0
     

     
     
198879
                           gb|AAO57326.1|
                           (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           285
                           45.61
                           54.03
                           96
                           684.0
     

     
     
198880
                           gb|AAQ59594.1|
                           (AE016916) probable pirin-like protein [Chromobacterium violaceum ATCC 12472]
                           288
                           31.25
                           40.97
                           107
                           439.0
     

     
     
198881
                           emb|CAD14069.1|
                           (AL646059) PROBABLE PIRIN-LIKE PROTEIN [Ralstonia solanacearum]
                           303
                           30.69
                           40.26
                           118
                           427.0
     

     






      

          
GC ORFID: 49304How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 3034496Stop: 3035068

          
Length: 573


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3240 translation of PA3240Homolog Bit Score 378.0

          
Other Homologs:  t_PA3240 translation of PA3240 (BLASTP 378), psyr_15may02_Scaffold16_revised_gene2660 related to: gi|15598436|ref|NP_251930.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa] sp|Q9HZ00|YW40_PSEAE Hypothetical protein PA3240 pir||B83239 conserved hypothetical protein PA3240 [imported] - Pseudomonas aeruginosa (strain PAO1) -TRUNCATED- (BLASTP 259)

          
GC ORF Sequence

           
ATGACCGCCGCCCACGGCATCATCCACAGCGAGATGCCGGAACAGGTGGAAGGCGCGATGCGTGGCTTCCAG 
CTGTGGGTCAACCTGCCGGCGAAGAACAAGCTGGCCCCAGCCGGCTATCGCGATATCGAGCCGGAAGACGTG 
CCACGCCTGGAAACCGCCGGAGGCGTGAAGGTCACGGTGATCGCCGGTCGCTTCGACGACGGCCAGGCGCAG 
CAGATCGGCGCCGTGGAAAGGCCGGACACCGAGCCGCACTACTACGACCTGCAACTGCCTGCCGGCGGCCGC 
ATCGCCCCGCGCCTGCCGGACGGCCATCGCGTGCTGCTGTACGTCTACGAAGGCAGCCTGACGGTGGAAGGC 
GAACGCCCGGTGGAAATCGCCACCAATCGCCTGGCTCGGCTGTCCGAAGAAGGGGAACTGAGCCTGCGCAGC 
GAAGCCGGCGCCCGGGTACTGGTGCTCGCCGGCAAGCCGTTGCGCGAGCCGATCGTCCAGTACGGTCCGTTC 
GTGATGAACAGCCGCGAGGAAATCGAGCAGGCGCTACGCGACTATCGCGACGGTGTCCTGGCCGTCTGA