ViewGene

Locus Name:
GeneID:
Location:

GeneID:6293
TrivialName: PA14_22430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22430
PAO1 Ortholog Locus:
Sequence Length:2220
Protein Length:739
Start: 1952161
Stop: 1954380
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAC18002.1| (AP005218) putative ABC transporter ATP binding protein [Corynebacterium efficiens YS-314]
Identities = 160/614 (26%), Positives = 215/614 (35%), Gaps = 100/614 (16%)
Sequence:
ATGCGGCAGGCGTCGGGATCGAGCCGGGGCACGGGTTCGATAAGAACACCGTTTCGCTGGCGGAAAAAATCG
AAGCGCGTGCTAGTCGAGATCGACGGCGGTGATGATTGCCGCGCAAAGGCCCGTTGCAGAGCCTTTGACAAG
GTCACCCAAGCCGGGCGGCGCGAGCCGCCGCCCGGTGCCGAGGCTTCAGTCGACGCCGACGAAGCCGCCGGT
CTGGTGTTGCCAGAGGCGCGCATAGAGGCCGCCATGGGCGAGCAACTCGGCATGCGTGCCGCTTTCGGCGAT
GTGGCCCTTGTCCAGCACCACCAGGCGGTCCATGCGCGCAATGGTCGACAGGCGGTGGGCGATGGCGATCAC
CGTCTTGCCCTGCATCAGGGTCTCCAGGCTTTCCTGGATCGCCGATTCGACTTCCGAGTCCAGCGCCGAGGT
CGCTTCGTCGAGGATCAGGATCGGCGCGTCCTTGAGCAGCACCCGGGCGATGGCGATGCGCTGGCGCTGGCC
GCCGGAGAGCTTCACTCCGCGTTCGCCGACATGGGCGTCGAAGCCGCGGCGGCCCTCGGCGTCGCTGAGCAG
CGGGATGAACTCGTCGGCGCGAGCCTTGCGCACCGCTTCCATGAGTTCCGCGTCGCTGGCGCCGGGCCGGCC
GTAGAGCAGGTTGTCGCGGATCGAACGGTGCAACAGCGAGGTGTCCTGGGTGACCATGCCGATCTGCGCGCG
CAGGCTTTCCTGGGTCACCCCGGCGATGTCCTGGCCATCGACCAGGATGCGTCCGCTCTCCAGGTCGTACAG
GCGCAGCAGCAGGTTGACCAGGGTCGACTTGCCGGCGCCGGAAGGTCCGACCAGGCCGATCTTCTCGCCGGG
CCGGACCTTCAGGTCGAGACCCTGGATCACGCCGCTGCCCTTGCCGTAGTGGAAGGCGATGTGCTCGAACTC
CACCTCGCCGCGCTCTACCCGCAGCGGCTGGGCGTCCTCGCGGTCGACCACCTTGCGCGGCAGGGCGATGGT
CTGCATGCCATCCTGGACCTGGCCGATGTTCTCGAAGATGCCGCCGACCACCCACATGATCCAGCCGGACAT
GTTGTTGATGCGGATCACCAGCCCGGTGGCCAGGGCGATGGCGCCCACCGAGATCAGCTCCTGGCTCCACAG
CCACAGGGCCAGGCCGGTGGTGCCGGTGATCAGCATGCCGTTCATCACCGTGATGGTCACGTCCATGGAGGT
CACTACGCGCCCGGCGCGTTGCGACTTGAGGGTCTGGTCGCCGATCGCTTCGCGGGCGTAGTCCTCTTCCTG
GCGGGTGTGGGCGAACAGCTTCAGCGTGGTGATGTTGGTGTAGCCGTCGACGATCCGCCCCATCAGCTTCGA
GCGCGAATCCGAGGCCTCCACCGAGCGGCGCTTGACCTGGGGAACGAAGTAGGCGAGGGCGCCGACGTAGGC
GAATACCCACAGCACCAGAGGGATCATCAGGCGCCAGTCGGCCTCGGCGAACAGCACCAGGGCGCTGACGGT
ATAGATCAGCACGTGCCAGAGGGCGTCCACCACCTGCACCGCCGAATCGCGCAACGAGTTGCCGGTCTGCAT
GATGCGCTGGGCGATGCGCCCGGCGAAATCGTTCTGGAAGAAGCCGAGGCTCTGCTTGAGCACGTAGCGGTG
GTTCTGCCAGCGGATCAGGTTGGTCATGCTCGGGTTGATGCTCTGGTGCACCAGCATGTCGTGCAGGGCGTT
GAACAGCGGGCGCAGGACCAGCGCCACCACCGCCATCCAGATCAGTTCGTTGGCGTGCACGCGGAAGAACTC
CGCGCTGGGCGTGCTCTGGGCGAGATCGACGATGCGGCCGAGGTAGCTGAACAGCGCCACCTCGATCAGCGC
GACGATCAGGCCGACCACCAGCAGGGCCAGGAACACCGGCCAGACCTGGCGCAGGAAGTAGACATAGAAACG
CAGCACTTCGCTGGGCGGCATGCGTTCGGAAGCGCTGCGGAACGGGTCGATCAGACGTTCGAAACGACGATA
AAGCATGATGGCTCTCTTCTGGAGCGGGCCCGTCCTGGACCCGCCGGATCAAGCCCCTGCGGCTGGACTCAG
AGGCGTTTGGCGGACAGGATCACCACGTCGTCGCTCGGCACGTCGGCGAAGCCGTTGCGGCGGGTGGTGGGA
ACCTTGGCGATCTGGTCGACCACGCCCATGCCACGCACCACCTTGCCGAACACCGCATAG
Translation:
MRQASGSSRGTGSIRTPFRWRKKSKRVLVEIDGGDDCRAKARCRAFDKVTQAGRREPPPGAEASVDADEAAG
LVLPEARIEAAMGEQLGMRAAFGDVALVQHHQAVHARNGRQAVGDGDHRLALHQGLQAFLDRRFDFRVQRRG
RFVEDQDRRVLEQHPGDGDALALAAGELHSAFADMGVEAAAALGVAEQRDELVGASLAHRFHEFRVAGAGPA
VEQVVADRTVQQRGVLGDHADLRAQAFLGHPGDVLAIDQDASALQVVQAQQQVDQGRLAGAGRSDQADLLAG
PDLQVETLDHAAALAVVEGDVLELHLAALYPQRLGVLAVDHLARQGDGLHAILDLADVLEDAADHPHDPAGH
VVDADHQPGGQGDGAHRDQLLAPQPQGQAGGAGDQHAVHHRDGHVHGGHYAPGALRLEGLVADRFAGVVLFL
AGVGEQLQRGDVGVAVDDPPHQLRARIRGLHRAALDLGNEVGEGADVGEYPQHQRDHQAPVGLGEQHQGADG
IDQHVPEGVHHLHRRIAQRVAGLHDALGDAPGEIVLEEAEALLEHVAVVLPADQVGHARVDALVHQHVVQGV
EQRAQDQRHHRHPDQFVGVHAEELRAGRALGEIDDAAEVAEQRHLDQRDDQADHQQGQEHRPDLAQEVDIET
QHFAGRHAFGSAAERVDQTFETTIKHDGSLLERARPGPAGSSPCGWTQRRLADRITTSSLGTSAKPLRRVVG
TLAIWSTTPMPRTTLPNTA*
AnnotationID:6294GeneID:6293
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 13:01:46
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:12425
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29699
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49295How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 3001770Stop: 2999551
Length: 2220
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCGGCAGGCGTCGGGATCGAGCCGGGGCACGGGTTCGATAAGAACACCGTTTCGCTGGCGGAAAAAATCG
AAGCGCGTGCTAGTCGAGATCGACGGCGGTGATGATTGCCGCGCAAAGGCCCGTTGCAGAGCCTTTGACAAG
GTCACCCAAGCCGGGCGGCGCGAGCCGCCGCCCGGTGCCGAGGCTTCAGTCGACGCCGACGAAGCCGCCGGT
CTGGTGTTGCCAGAGGCGCGCATAGAGGCCGCCATGGGCGAGCAACTCGGCATGCGTGCCGCTTTCGGCGAT
GTGGCCCTTGTCCAGCACCACCAGGCGGTCCATGCGCGCAATGGTCGACAGGCGGTGGGCGATGGCGATCAC
CGTCTTGCCCTGCATCAGGGTCTCCAGGCTTTCCTGGATCGCCGATTCGACTTCCGAGTCCAGCGCCGAGGT
CGCTTCGTCGAGGATCAGGATCGGCGCGTCCTTGAGCAGCACCCGGGCGATGGCGATGCGCTGGCGCTGGCC
GCCGGAGAGCTTCACTCCGCGTTCGCCGACATGGGCGTCGAAGCCGCGGCGGCCCTCGGCGTCGCTGAGCAG
CGGGATGAACTCGTCGGCGCGAGCCTTGCGCACCGCTTCCATGAGTTCCGCGTCGCTGGCGCCGGGCCGGCC
GTAGAGCAGGTTGTCGCGGATCGAACGGTGCAACAGCGAGGTGTCCTGGGTGACCATGCCGATCTGCGCGCG
CAGGCTTTCCTGGGTCACCCCGGCGATGTCCTGGCCATCGACCAGGATGCGTCCGCTCTCCAGGTCGTACAG
GCGCAGCAGCAGGTTGACCAGGGTCGACTTGCCGGCGCCGGAAGGTCCGACCAGGCCGATCTTCTCGCCGGG
CCGGACCTTCAGGTCGAGACCCTGGATCACGCCGCTGCCCTTGCCGTAGTGGAAGGCGATGTGCTCGAACTC
CACCTCGCCGCGCTCTACCCGCAGCGGCTGGGCGTCCTCGCGGTCGACCACCTTGCGCGGCAGGGCGATGGT
CTGCATGCCATCCTGGACCTGGCCGATGTTCTCGAAGATGCCGCCGACCACCCACATGATCCAGCCGGACAT
GTTGTTGATGCGGATCACCAGCCCGGTGGCCAGGGCGATGGCGCCCACCGAGATCAGCTCCTGGCTCCACAG
CCACAGGGCCAGGCCGGTGGTGCCGGTGATCAGCATGCCGTTCATCACCGTGATGGTCACGTCCATGGAGGT
CACTACGCGCCCGGCGCGTTGCGACTTGAGGGTCTGGTCGCCGATCGCTTCGCGGGCGTAGTCCTCTTCCTG
GCGGGTGTGGGCGAACAGCTTCAGCGTGGTGATGTTGGTGTAGCCGTCGACGATCCGCCCCATCAGCTTCGA
GCGCGAATCCGAGGCCTCCACCGAGCGGCGCTTGACCTGGGGAACGAAGTAGGCGAGGGCGCCGACGTAGGC
GAATACCCACAGCACCAGAGGGATCATCAGGCGCCAGTCGGCCTCGGCGAACAGCACCAGGGCGCTGACGGT
ATAGATCAGCACGTGCCAGAGGGCGTCCACCACCTGCACCGCCGAATCGCGCAACGAGTTGCCGGTCTGCAT
GATGCGCTGGGCGATGCGCCCGGCGAAATCGTTCTGGAAGAAGCCGAGGCTCTGCTTGAGCACGTAGCGGTG
GTTCTGCCAGCGGATCAGGTTGGTCATGCTCGGGTTGATGCTCTGGTGCACCAGCATGTCGTGCAGGGCGTT
GAACAGCGGGCGCAGGACCAGCGCCACCACCGCCATCCAGATCAGTTCGTTGGCGTGCACGCGGAAGAACTC
CGCGCTGGGCGTGCTCTGGGCGAGATCGACGATGCGGCCGAGGTAGCTGAACAGCGCCACCTCGATCAGCGC
GACGATCAGGCCGACCACCAGCAGGGCCAGGAACACCGGCCAGACCTGGCGCAGGAAGTAGACATAGAAACG
CAGCACTTCGCTGGGCGGCATGCGTTCGGAAGCGCTGCGGAACGGGTCGATCAGACGTTCGAAACGACGATA
AAGCATGATGGCTCTCTTCTGGAGCGGGCCCGTCCTGGACCCGCCGGATCAAGCCCCTGCGGCTGGACTCAG
AGGCGTTTGGCGGACAGGATCACCACGTCGTCGCTCGGCACGTCGGCGAAGCCGTTGCGGCGGGTGGTGGGA
ACCTTGGCGATCTGGTCGACCACGCCCATGCCACGCACCACCTTGCCGAACACCGCATAG