ViewGene
Locus Name:
GeneID:
Location:

GeneID:6286
TrivialName: PA14_22750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22750
PAO1 Ortholog Locus:
Sequence Length:723
Protein Length:240
Start: 1978662
Stop: 1979384
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAA74222.1| (M38698) lcrC gene product [Rhizobium sp.]
Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 12/187 (6%)
Sequence:
TTGTGTCGGCGGGCTGACGAAACCCGCTCAGTGGCTGTAGTAGTAGCCGCGGCCGCGCAGGGCGAGGATGCG
CGGGCTGCCGTCGGGGTGGCTGCCGAGCTTCTTGCGCAGGTTGCTGACGTGCATGTCCAGGCTGCGGTCGTA
GAGGGTCAGCTTGCGGCCCAGCGCCAGTTGCGCCAGGGCCTGCTTGTCCAGCGGCTCGCCGGGCTGGCGCAG
GAGCGCTTCGAGGATGCGGCTTTCGGAAAGGGTCAGGCTGATCTCCTGGCCGTCGATCTGCGCCACGCCGCG
CGTCAGGTTCAGCGACAGGTCGCCCAGTTGCATCTGCGCGCTGGGCTGCGCCGGGTGGGTTCGCCGCAGCAC
GGCGCGCAGCCGTGCGGTGAGTTCGCGCGGGTCGCAGGGCTTGGCCAGGTAGTCGTCGGCGCCCAGTTCCAG
ACCGAGGATGCGGTCCAGCGGCTCGCCGCGGGCGGACAGCATCAGCACCGGCAGGTCGGGATGGTCGCCGCG
CAGTTGCTTGAGCAGTTCCAGGCCGCTGCCGTCCGGCAGCATCACGTCGAGCACCACGGCATCCGGCGTCTG
CTCGGCGAGGGCGCGACGGGCCTGGGCGCCGTCGTGGCTGGCACGCACGGAGAAACCTTCCTGGACCAGCCA
GGTACCGAGCAGCTCGCAGAGCTCCCGGTCATCGTCGATCAACAGCAGTTCGCTCATCGGGTGTCGCTCAAT
TGA
Translation:
MCRRADETRSVAVVVAAAAQGEDARAAVGVAAELLAQVADVHVQAAVVEGQLAAQRQLRQGLLVQRLAGLAQ
ERFEDAAFGKGQADLLAVDLRHAARQVQRQVAQLHLRAGLRRVGSPQHGAQPCGEFARVAGLGQVVVGAQFQ
TEDAVQRLAAGGQHQHRQVGMVAAQLLEQFQAAAVRQHHVEHHGIRRLLGEGATGLGAVVAGTHGETFLDQP
GTEQLAELPVIVDQQQFAHRVSLN*
AnnotationID:6287GeneID:6286
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 07:07:00
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:16086




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29685




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49288How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2975269Stop: 2974547

          
Length: 723


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
TTGTGTCGGCGGGCTGACGAAACCCGCTCAGTGGCTGTAGTAGTAGCCGCGGCCGCGCAGGGCGAGGATGCG 
CGGGCTGCCGTCGGGGTGGCTGCCGAGCTTCTTGCGCAGGTTGCTGACGTGCATGTCCAGGCTGCGGTCGTA 
GAGGGTCAGCTTGCGGCCCAGCGCCAGTTGCGCCAGGGCCTGCTTGTCCAGCGGCTCGCCGGGCTGGCGCAG 
GAGCGCTTCGAGGATGCGGCTTTCGGAAAGGGTCAGGCTGATCTCCTGGCCGTCGATCTGCGCCACGCCGCG 
CGTCAGGTTCAGCGACAGGTCGCCCAGTTGCATCTGCGCGCTGGGCTGCGCCGGGTGGGTTCGCCGCAGCAC 
GGCGCGCAGCCGTGCGGTGAGTTCGCGCGGGTCGCAGGGCTTGGCCAGGTAGTCGTCGGCGCCCAGTTCCAG 
ACCGAGGATGCGGTCCAGCGGCTCGCCGCGGGCGGACAGCATCAGCACCGGCAGGTCGGGATGGTCGCCGCG 
CAGTTGCTTGAGCAGTTCCAGGCCGCTGCCGTCCGGCAGCATCACGTCGAGCACCACGGCATCCGGCGTCTG 
CTCGGCGAGGGCGCGACGGGCCTGGGCGCCGTCGTGGCTGGCACGCACGGAGAAACCTTCCTGGACCAGCCA 
GGTACCGAGCAGCTCGCAGAGCTCCCGGTCATCGTCGATCAACAGCAGTTCGCTCATCGGGTGTCGCTCAAT 
TGA