ViewGene
Locus Name:
GeneID:
Location:

GeneID:6280
TrivialName: PA14_22920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22920
PAO1 Ortholog Locus:
Sequence Length:948
Protein Length:315
Start: 1989516
Stop: 1988569
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK23765.1| (AE005853) hypothetical protein [Caulobacter crescentus CB15]
Identities = 95/307 (30%), Positives = 120/307 (39%), Gaps = 54/307 (17%)
Sequence:
ATGTTCGGCGGTCATGACCCACACCGGTACGTCCTGCAGGTAAGCGCCACTGGTCTTGCCACGCCTGGCGAA
GGCCTCGGCGAAACCGCTGGCGATGAAGCGCTCGAGGAAACGCGGGACGATGCCGCCGGTAATGTAGACGCC
ACCGAGCGCGCCGACGGTGAGCACCGCGTTGCCGGCGACCCGCGCCAGCCACAGGAAGAAGTGCTCCAGCAC
GGCGTCCGCCTGGGCGTCGCCGGCCATGGCCAGGGCACCGACTTCCGCCGCACTGCTCGCGCGGACGGCGAC
CCCGTCCAGGGCACAGCTGATTTCATAGAGGGCGAGCAGGCCGTTGCCGGACAGTGCGCGCTCGGCGGAGAC
GTGTCCGTAGCGCGCCTGCAGGCCCTGCCAGAGCGCGAAGTCGCGCGGCGAAGTGACCGGCAGGTCGACATG
CCCGCCCTCGCAGGGCAGCACTTCCCAACGTCCCCCGCCCAGCGGCAGCAGGCTGCCGACGCCAAGGCCGGT
GCCGGGACCGATGATCAGCCGGGCGCGATCCGCCTGGGCGCTGCCGGCCCGGACCTGCACCAGCTCGTCCGC
GCCCAGCCGCGAGGCGGCCCAGGCCATGGTGCTGAAGTCGTTGACCAGCAGCAGGTGATCCAGCCCCAGCTC
CTCGCGGAACGCGGCGCGATTGATCACCCAGTGGTTGTTGGTGAAACGGAAATCCGCCGCCCCAACCGGACC
GGCGCAGGCCAGGCAGACCGAGTCGATGTTCGCCACCGATTCGCCGATCCGCGCCAGGTAGTCGCGCACGGC
CAGTTCAGGCCGTGGGTAGTCGGCGCAGGCGAGCACCTCGATGGATTCCAGGCGCTGCCCGCGCCAGAGCGC
GAAACGCGCATTGGTGCCGCCGATATCGCCGACCAGGCCGAGGCCGCCGGCGCTTCTCTTGTTGTCGTTATT
CATCGTCATTGA
Translation:
MFGGHDPHRYVLQVSATGLATPGEGLGETAGDEALEETRDDAAGNVDATERADGEHRVAGDPRQPQEEVLQH
GVRLGVAGHGQGTDFRRTARADGDPVQGTADFIEGEQAVAGQCALGGDVSVARLQALPEREVARRSDRQVDM
PALAGQHFPTSPAQRQQAADAKAGAGTDDQPGAIRLGAAGPDLHQLVRAQPRGGPGHGAEVVDQQQVIQPQL
LAERGAIDHPVVVGETEIRRPNRTGAGQADRVDVRHRFADPRQVVAHGQFRPWVVGAGEHLDGFQALPAPER
ETRIGAADIADQAEAAGASLVVVIHRH*
AnnotationID:6281GeneID:6280
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 07:07:52
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:12402




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29674




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49282How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2964415Stop: 2965362

          
Length: 948


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGTTCGGCGGTCATGACCCACACCGGTACGTCCTGCAGGTAAGCGCCACTGGTCTTGCCACGCCTGGCGAA 
GGCCTCGGCGAAACCGCTGGCGATGAAGCGCTCGAGGAAACGCGGGACGATGCCGCCGGTAATGTAGACGCC 
ACCGAGCGCGCCGACGGTGAGCACCGCGTTGCCGGCGACCCGCGCCAGCCACAGGAAGAAGTGCTCCAGCAC 
GGCGTCCGCCTGGGCGTCGCCGGCCATGGCCAGGGCACCGACTTCCGCCGCACTGCTCGCGCGGACGGCGAC 
CCCGTCCAGGGCACAGCTGATTTCATAGAGGGCGAGCAGGCCGTTGCCGGACAGTGCGCGCTCGGCGGAGAC 
GTGTCCGTAGCGCGCCTGCAGGCCCTGCCAGAGCGCGAAGTCGCGCGGCGAAGTGACCGGCAGGTCGACATG 
CCCGCCCTCGCAGGGCAGCACTTCCCAACGTCCCCCGCCCAGCGGCAGCAGGCTGCCGACGCCAAGGCCGGT 
GCCGGGACCGATGATCAGCCGGGCGCGATCCGCCTGGGCGCTGCCGGCCCGGACCTGCACCAGCTCGTCCGC 
GCCCAGCCGCGAGGCGGCCCAGGCCATGGTGCTGAAGTCGTTGACCAGCAGCAGGTGATCCAGCCCCAGCTC 
CTCGCGGAACGCGGCGCGATTGATCACCCAGTGGTTGTTGGTGAAACGGAAATCCGCCGCCCCAACCGGACC 
GGCGCAGGCCAGGCAGACCGAGTCGATGTTCGCCACCGATTCGCCGATCCGCGCCAGGTAGTCGCGCACGGC 
CAGTTCAGGCCGTGGGTAGTCGGCGCAGGCGAGCACCTCGATGGATTCCAGGCGCTGCCCGCGCCAGAGCGC 
GAAACGCGCATTGGTGCCGCCGATATCGCCGACCAGGCCGAGGCCGCCGGCGCTTCTCTTGTTGTCGTTATT 
CATCGTCATTGA