ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6261

TrivialName: PA14_23820

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_23820

PAO1 Ortholog Locus:

Sequence Length: 3567

Protein Length: 1188

Start: 2073628

Stop: 2070062

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05114.1|AE004598_13 (AE004598) type III export protein PscL [Pseudomonas aeruginosa PAO1] Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 27/221 (12%)

Sequence:

GTGAGCGGTGACCCCACCGGCGCGCCGGTCGCGCGTCTCGAGCACCTCCTTCGCCCATTCGATCGGCCGCTC
GCCGGCACCGATGGTCATCAGGACGCCAGCGATGTTGCGCACCATATGGTGAAGGAAAGCGTTACCGCGGAT
GTCCAGCACGATCAACCGACCATGCTCCAGCAAGCGCACGTGATGCATGGTCTTGACCGGCGACTTGGCCTG
GCACTGCACCGCCCGGAACGAGGTGAAGTCATGGGTGCCGACCAGTACCTGGGCCGCCTCGCGCATCCGCCC
GATATCCAGCGGCCGATGGTTCCAGGTGACCTCCTCGGCCAGGTGCGCCGGGCGGATCGGATCGTTGTAGAT
GGCGTAGCGATAGCGCCGGGCCATGGCCGAGAAGCGCGCGTGGAAATGCGCCGGCATCACTCTCGCCCAGGT
CACACTGATATCCGCGGGCAGGTTGGCGTTGGTGCCCATCACCCATGCTTTCAACGGGCGCTCCACCGCGGT
GTCGAAATGCACTACCTGGCCGCTGGCATGAACGGCAGCGTCGGTACGGCCGGCGCAGATCACCCCGACCGG
CTCGGCGGCAACCTTCGACAAGGCGCGCTCCAGCGCTTCCTGCACGGAAGGCACGCCGGCTTCCTGGCGCTG
CCAGCCACGATAGCGGGAGCCCTTGTACTCGATGCCGAGGGCGATTCTGGAAACGCCAGCGGCAGCCGATTC
GGCTGCCGCTGGCGGAACAACATCGTTCATGAGGGTCGCTTCATTTCCGGATCAGGCCAGGCGCTCCAGCAA
CTCGCGGGCTTCCGCCTGCTGGCTGTCGTTACCTTCGGCCAGGACTTCGTCGAGGATATCGCGCGCGCCTTC
GCTATCGCCCATGTCGATGTAGGCGCGAGCCAGATCCAGCTTGGTCGCCGCTTCGTCGGCACCGGAGAGGAA
GTCGAAGTCATCGTCGGCGTCTCCGTCCAGGGCGGAGGCGACCGCTGCATCCTCGGCGGAGAAACTCGGCGC
CGCGCTCTTCGGCTCGTCAAGGTTGCTGGCCAACTCGTCCAACTGCGCACTCACCTCGTCCAACTGGGCGGC
GAAACTGTCCTCGCCCTTCTCCGGAGCGGCCGGCTCCGTCGGCTCGTCGGCCAGCGACAGGTCGAAGTCGTC
CGGCAGGGACAACGCCGGCTCTTCGGCAGCCTCGGTATCGAGGGTGAATTCGTTGTTGGCTGGCGCCGCGGC
GGGCACCTCGTCGTTCAGCGAAAGCAGGAAGTCGTCGTCCGAAAGCTTGTCTTCCGGCGCATCGAGATCCAG
GGAGAAATCGCCCAGGTCGTCATGCTTGGGTTGGCTCGGAGTCTCTGCCAACTCCGCGAAATCCAGGCCGAA
GTCGAGATCGTCGACAGGCTTGTCCGCCGCGGTCGAGGCCGCCAGGTCCAGATCGCTGTCCAGGGTCAGGTC
GTCCAGCGCCCCGCTGTCGGACTTGAGATCGGCCTGCACGTCGTCGCTGCCAAGATCGCCGCCGCCCAGGTC
GTCCAGGCTCAGGTCGAAGGCGTCGTCGAGATCCTGTCCTGCCGCATCCGGCTTGGCCGCGTGACCGCTGTC
GTCGAGCGACAGGTCGTCGAGGCTGAAGCTATCCAGCTCGTCCTGCGCCAGCTTGGCGCCGGCCAGGCCGGC
AACCGCGGCGACCGCGACCATTGCCGGGTAGCGCGACTTGAGCTGCTCGACCTGCGGCTGTGCGCCGCCGAT
TTCGCGCAGCTCGTTTTCCTGGCGAGCGAAACCTTCGCGATCGCCCATCTCGGCATAGACTTCCATCAGCTT
GAGGCGCAGGTCGGTGCGCTGCGGCTCGTCGTAGATGGCGTTCTGCAACAGTTCGGCGGCCTGGTTGAAACG
CCCGTAGGCGATATAGATGTCGGCCTCGCCCAGCGCATCGGAAGTCTGCGCAGTGGTCTTCTCGACCTGCGG
CGCAGCGGCTGCGACCTGCGGTTCAGGCTCGTCGAGGGTCAGGTCGTCGAAGCCGTCCTTTCCCAGGTCCAG
CGCATCCTCCTGTTCCTCGCCGGCATCCGCGGCGAAAGCCTGGGCTTCTTCCTTCTCTTTCTGCGCATTGCG
CCGCGACAGGATCATCAGCAGCACCAGCAACGCCAGCAGTGCACTACCGCCGATCACCGCCAACCACAGCGG
GTTGGCCAGCAGTTCGTCGAGGAAGCTCGGTGCCGGCTGTTCTGCCGCCTGTACCGGAGCGGGCGCCGGAAC
GGCAGGTGCCGGAGGCTTCTCGGCAACTGGCGCGGGCGGCGGCGCCACCGGAGGCTGCGCCGGAGCGGCGGG
TGCTTCTCCGGCCGGAGCAGGAGTCGGCGCTGCCGCAGCGGGAGTCCCGGGCTGAGCCGGCGCCTGCGCGGC
TGCATTGGGCTGGGACGCATCCGGCAGGGCTGCGTTCGGCTGGGCTGCGCCCTGGCCTTCGGCGCCCAACTG
CCCTTGCAGCTTGGCCAACTGGGCGTCCTTCAACTGGATCAACTTCTGCAGCTTGTCCAGCTGGCTCTGCAG
ATCCTGCATGCGGCTCTGCAGTTCTTCGTTCTCGCGGCGAGTGCTATCGAGGCTTTCCTTGGTCACCGCCAG
GGTATCGGCGATCGCCTTGCTGTCGCCCTTCCCGCCCTTGTCGGCACCCTTGCTGGCCTTGCCCTCGCCAGA
CACCAGGCGCAGGTTGTCCGTGGCGTCGACCTTGGATGGCGCCGACCCGGCGGCATTGCGCTGGGTCGCATC
CAACTGCCTGGCGCCAGCGGTGCCCGCGGCCGGATTGCGGCTGCCGCGCCAGCTCTGGTTCTGCGCCTGCAC
CTGGGACAGCGCCTCGCGCGGCGAGCGCTCCAGCATCTGCTGTTCGGTGGGAATGCGCAGGACCTGGCCGCT
CTTCAGCCGGTTGATGTTGCCATCGACGAAGGCGCCCGGATTCAGTTCCTGGAACGCGAGCATCGCCTGGGG
TACGGAAACGCGATCGGTACGGTTGCGCTGGGCGATCTCCCAGAGCGTGTCGTTGGAAACGGTGCGATAGGT
GTCGCTGCCTGCCGGCGCGGTGGTACGCACCGGAGCCGGCGCCTGCGGGGTTCGCGGGGCGCCGGTCGCGCG
CGGCGCGCTGACCGGCGCTTGCGGAGCGCTTGCCGCGGCCTGCGGGGAGTACAGCGGCGGATCCAGCAGGAC
GGTGTACTCGCGCAGCAGGCGGCCGTTCGGCCAGAGCACCTGGACCAGGAAGTTCAGGTAGGGCTCCTGCAC
CGGCTTCGACGAGGTCACGCGAATGACGCTCTTGCCGTTGGGCTTCACCACCGGCGTGAACTTCAGGTCGGT
GAGGTAGTACAGGCGATCGACGCCCGCCTTGCTGAACTCTTCCGGCGACGCCAGGCTCGGGATCACCTCGCC
CGAACCCAGGTCACGAACTTCGAGCAGCTCGATCTCGGCATCCAACGGTTGGTTCAACGCCGACTTCAGGGT
GATTTCCCCCAGTCCCAATCCATGCGCCATGCCGGAAGTCAGGACCGAGGCCGCCGCGATTGCCCGAACCAG
TGTACGAAGCCGAACCATAGTGTAATCCCTTGGTTTTAA

Translation:

MSGDPTGAPVARLEHLLRPFDRPLAGTDGHQDASDVAHHMVKESVTADVQHDQPTMLQQAHVMHGLDRRLGL
ALHRPERGEVMGADQYLGRLAHPPDIQRPMVPGDLLGQVRRADRIVVDGVAIAPGHGREARVEMRRHHSRPG
HTDIRGQVGVGAHHPCFQRALHRGVEMHYLAAGMNGSVGTAGADHPDRLGGNLRQGALQRFLHGRHAGFLAL
PATIAGALVLDAEGDSGNASGSRFGCRWRNNIVHEGRFISGSGQALQQLAGFRLLAVVTFGQDFVEDIARAF
AIAHVDVGASQIQLGRRFVGTGEEVEVIVGVSVQGGGDRCILGGETRRRALRLVKVAGQLVQLRTHLVQLGG
ETVLALLRSGRLRRLVGQRQVEVVRQGQRRLFGSLGIEGEFVVGWRRGGHLVVQRKQEVVVRKLVFRRIEIQ
GEIAQVVMLGLARSLCQLREIQAEVEIVDRLVRRGRGRQVQIAVQGQVVQRPAVGLEIGLHVVAAKIAAAQV
VQAQVEGVVEILSCRIRLGRVTAVVERQVVEAEAIQLVLRQLGAGQAGNRGDRDHCRVARLELLDLRLCAAD
FAQLVFLASETFAIAHLGIDFHQLEAQVGALRLVVDGVLQQFGGLVETPVGDIDVGLAQRIGSLRSGLLDLR
RSGCDLRFRLVEGQVVEAVLSQVQRILLFLAGIRGESLGFFLLFLRIAPRQDHQQHQQRQQCTTADHRQPQR
VGQQFVEEARCRLFCRLYRSGRRNGRCRRLLGNWRGRRRHRRLRRSGGCFSGRSRSRRCRSGSPGLSRRLRG
CIGLGRIRQGCVRLGCALAFGAQLPLQLGQLGVLQLDQLLQLVQLALQILHAALQFFVLAASAIEAFLGHRQ
GIGDRLAVALPALVGTLAGLALARHQAQVVRGVDLGWRRPGGIALGRIQLPGASGARGRIAAAAPALVLRLH
LGQRLARRALQHLLFGGNAQDLAALQPVDVAIDEGARIQFLEREHRLGYGNAIGTVALGDLPERVVGNGAIG
VAACRRGGTHRSRRLRGSRGAGRARRADRRLRSACRGLRGVQRRIQQDGVLAQQAAVRPEHLDQEVQVGLLH
RLRRGHANDALAVGLHHRRELQVGEVVQAIDARLAELFRRRQARDHLARTQVTNFEQLDLGIQRLVQRRLQG
DFPQSQSMRHAGSQDRGRRDCPNQCTKPNHSVIPWF*

AnnotationID:6262 GeneID:6261

AnnotatorUID: diggins

Modification Date/Time: 2005-04-13 07:07:18

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:16059

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29639