ViewGene

Locus Name:
GeneID:
Location:

GeneID:6248
TrivialName: PA14_24450
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24450
PAO1 Ortholog Locus:
Sequence Length:3528
Protein Length:1175
Start: 2130044
Stop: 2133570
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
Inactivated 2/03/06. PA14_24450 (GeneID 6248) and PA14_24460 (GeneID 6247) replaced by PA14_24455 (GeneID 7388). Homology: gb|AAG06456.1|AE004731_4 (AE004731) NAD-dependent glutamate dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 944/944 (100%), Positives = 944/944 (100%)
Sequence:
ATGGCGTTCTTCACCGCGGCCAGCAAAGCCGATTTCCAGCATCAACTGCAGACGGCACTGGCGCAGCACCTC
GGCGACAAGGCGTTACCACAAGTCACGCTGTTCGCCGAACAGTTCTTCAGCCTGATCTCCCTCGATGAACTG
ACCCAGCGTCGGCTTTCCGACCTGGTCGGTTGCACCCTTTCCGCCTGGCGCCTGCTGGAGCGCTTCGACCGC
GACCAGCCCGAAGTCCGCGTATACAACCCCGACTACGAGAAGCACGGCTGGCAATCCACCCACACCGCGGTG
GAAGTGCTGCACCCGGACCTGCCGTTCCTGGTCGACTCGGTGCGCATGGAACTGAACCGTCGCGGCTACAGC
ATCCATACCCTGCAGACCAACGTCCTCAGCGTGCGCCGCTCGGCCAAGGGCGAGCTGAAGGAAATCCTGCCC
AAGGGTAGCCAAGGCAAGGACGTCAGCCAGGAATCGCTGATGTACCTGGAGATCGACCGTTGCGCCCACGCC
GGCGAACTGCGGGCGCTGGAGAAGGCCATCCTGGAAGTGCTCGGTGAAGTACGCGTGACCGTCGCCGACTTC
GAACCGATGAAGGCCAAGGCCCGCGAACTGCTGACCTGGCTTGGCAAGGCCAAGCTGAAGGTGCCGGCGGAG
GAACTGAAGGAAGTGCGCAGCTATCTCGAATGGCTGCTGGACAACCACTTCACCTTCCTCGGCTACGAGGAA
TTCAGCGTCGCCGACGAGGCCGACGGCGGGCGCATGGTCTACGACGAGAAATCCTTCCTCGGCCTGACCCGT
CTGCTGCGTGCCGGCCTGAGCAAGGATGACCTGCACATCGAGGACTATGCCGTCGCCTACCTGCGCGAACCG
GTCCTGCTGTCCTTCGCCAAGGCTGCCCATCCGAGCCGCGTGCACCGCCCGGCCTACCCGGACTACGTGTCG
ATCCGCGAGCTGGACGGCAAGGGCCGGGTGATCCGCGAGTGCCGCTTCATGGGCCTGTTCACCTCCTCGGTG
TACAACGAGAGCGTCAACGACATTCCCTTCATCCGCGGCAAGGTCGCCGAAGTGATGCGGCGCTCCGGTTTC
GACACCAAGGCCCACCTCGGCAAGGAACTGGCCCAGGTGCTGGAAGTACTGCCGCGCGACGACCTGTTCCAG
ACCCCGGTGGACGAGCTGTTCAGCACCGCCCTGGCGATCGTCCGCATCCAGGAGCGCAACAAGATCCGCGTG
TTCCTGCGCAAGGACCCCTACGGTCGCTTCTGCTACTGCCTGGCCTACGTGCCGCGCGACGTGTATTCCACC
GAGACGCGCCTGAAGATCCAGCAGGTCCTGATGGAGCGCCTGCAAGCCAGCGACTGCGAGTTCTGGACTTTC
TTCTCCGAGTCGGTGCTGGCCCGCGTGCAGTTCATCCTCCGCGTCGACCCGAAGTCGCGCATCGACATCGAC
CCGGCGCGCCTGGAGGAAGAAGTGATCCAGGCCTGCCGTTCCTGGCAGGACGACTACAGCAGCCTGGTGGTG
GAAAACCTCGGCGAGGCCAAGGGCACCAACGTCCTGGCCGACTTCCCGAAAGGCTTCCCGGCCGGCTATCGC
GAGCGCTTCGCCCCGCACTTCGCGGTGGTCGACCTGCAGCACCTGCTCAGCCTGTCCGAGCAGCGCCCGCTG
GTGATGAGCTTCTACCAGCCGCTGGCGCAGGGCGAGCAGCAACTGCACTGCAAGCTGTACCACGCCGACACC
CCGCTGGCCCTGTCCGACGTCCTGCCGATCCTGGAGAACCTCGGCCTGCGCGTGCTCGGCGAATTCCCCTAC
CGCCTGCGCCACCAGAACGGCCGCGAATACTGGATCCACGACTTCGCCTTCACCTACGCCGAAGGGCTGGAC
GTGGACATCCAGCAGCTCAACGAGATCCTCCAGGACGCCTTCGTCCACATCGTCAGCGGCGACGCCGAGAAC
GACGCCTTCAACCGCCTGGTGCTGACCGCCAACCTGCCGTGGCGCGACGTCGCCCTGCTGCGTGCCTACGCG
CGTTACCTGAAGCAGATCCGCCTGGGCTTCGACCTCGGCTACATCGCCAGTGCGCTGAATGCCCACACCGAC
ATCGCCCGCGAGCTGGTGCGGCTGTTCAAGACCCGCTTCTACCTGGCGCGCAAACTCACCGCGGAAGACCTG
GAAGACAAGCAACAGAAGCTGGAGCAGGCGATCCTCGGTGCCCTCGACGAAGTCCAGGTGCTCAACGAGGAC
CGCATCCTGCGGCGCTACCTCGACCTGATCAAGGCAACCCTGCGGACCAACTTCTACCAGCCCGACGGCAAC
GGCCAGAACAAGAGCTACTTCAGCTTCAAGTTCAACCCGAAGGCCATCCCGGAGCTGCCCAGGCCGGTGCCC
AAGTACGAGATCTTCGTCTACTCGCCGCGCGTCGAGGGCGTGCACCTGCGCGGCGGCAAGGTGGCTCGCGGC
GGCTTGCGCTGGTCGGACCGCGAGGAAGACTTCCGCACCGAGGTGCTCGGCCTGGTCAAGGCCCAGCAGGTG
AAGAACGCGGTGATCGTGCCGGTCGGCGCCAAGGGCGGCTTCGTCCCGCGCCGCCTGCCGCTTGGCGGTAGC
CGCGACGAGATCCAGGCCGAGGCGATCGCCTGCTACCGGATCTTCATTTCCGGCCTGCTCGACATCACCGAC
AACCTCAAGGAAGGCGAAGTGGTGCCGCCGGCCAACGTGGTCCGCCACGACGAGGACGATCCCTACCTGGTG
GTCGCCGCGGACAAGGGCACGGCGACCTTCTCCGACATCGCCAACGGCATCGCCGCCGAGTACGGTTTCTGG
CTCGGCGACGCCTTCGCCTCGGGGCGGCTCCGCCGGCTACGACCACAAGGGCATGGGGATTACCGCCAAGGG
CGCCTGGGTCAGCGTGCAACGGCACTTCCGCGAACGCGGCATCGACGTGCAGAAGGACAACATCAGCGTCAT
CGGCATCGGCGACATGGCCGGCGACGTGTTCGGCAACGGCCTGCTGATGTCGGACAAGCTGCAACTGGTGGC
CGCCTTCAACCACATGCATATCTTCATCGACCCGAACCCGGACGCCGCCAGCAGCTTCGTCGAGCGCCAGCG
CCTGTTCAACCTGCCGCGTTCGAGCTGGGCCGACTACGACGCCAAGCTGATCTCCGCCGGCGGCGGGATCTT
CCTGCGCAGCGCCAAGAGCATCGCCATCACCCCGGAAATGCAGGCGCGCTTCGACATCCAGGCCGACAGGCT
GGCGCCCACCGAGCTGATCCACGCGCTGCTCAAGGCGCCGGTCGACCTGCTCTGGAACGGCGGTATCGGCAC
CTACGTGAAGTCGAGCAAGGAAACCCACGCCGATGTCGGCGACAAGGCCAACGACGGTCTGCGCGTCGACGG
CCGCGAGCTGCGCGCGAAGGTGGTGGGCGAGGGCGGCAACCTGGGCATGACCCAACTGGCGCGGGTCGAGTT
CGGCCTGCACGGCGGTGCCAACAACACCGATTTCATCGACAACGTCGGTGGCGTGGACTGCTCCGACCATGA
Translation:
MAFFTAASKADFQHQLQTALAQHLGDKALPQVTLFAEQFFSLISLDELTQRRLSDLVGCTLSAWRLLERFDR
DQPEVRVYNPDYEKHGWQSTHTAVEVLHPDLPFLVDSVRMELNRRGYSIHTLQTNVLSVRRSAKGELKEILP
KGSQGKDVSQESLMYLEIDRCAHAGELRALEKAILEVLGEVRVTVADFEPMKAKARELLTWLGKAKLKVPAE
ELKEVRSYLEWLLDNHFTFLGYEEFSVADEADGGRMVYDEKSFLGLTRLLRAGLSKDDLHIEDYAVAYLREP
VLLSFAKAAHPSRVHRPAYPDYVSIRELDGKGRVIRECRFMGLFTSSVYNESVNDIPFIRGKVAEVMRRSGF
DTKAHLGKELAQVLEVLPRDDLFQTPVDELFSTALAIVRIQERNKIRVFLRKDPYGRFCYCLAYVPRDVYST
ETRLKIQQVLMERLQASDCEFWTFFSESVLARVQFILRVDPKSRIDIDPARLEEEVIQACRSWQDDYSSLVV
ENLGEAKGTNVLADFPKGFPAGYRERFAPHFAVVDLQHLLSLSEQRPLVMSFYQPLAQGEQQLHCKLYHADT
PLALSDVLPILENLGLRVLGEFPYRLRHQNGREYWIHDFAFTYAEGLDVDIQQLNEILQDAFVHIVSGDAEN
DAFNRLVLTANLPWRDVALLRAYARYLKQIRLGFDLGYIASALNAHTDIARELVRLFKTRFYLARKLTAEDL
EDKQQKLEQAILGALDEVQVLNEDRILRRYLDLIKATLRTNFYQPDGNGQNKSYFSFKFNPKAIPELPRPVP
KYEIFVYSPRVEGVHLRGGKVARGGLRWSDREEDFRTEVLGLVKAQQVKNAVIVPVGAKGGFVPRRLPLGGS
RDEIQAEAIACYRIFISGLLDITDNLKEGEVVPPANVVRHDEDDPYLVVAADKGTATFSDIANGIAAEYGFW
LGDAFASGRLRRLRPQGHGDYRQGRLGQRATALPRTRHRRAEGQHQRHRHRRHGRRRVRQRPADVGQAATGG
RLQPHAYLHRPEPGRRQQLRRAPAPVQPAAFELGRLRRQADLRRRRDLPAQRQEHRHHPGNAGALRHPGRQA
GAHRADPRAAQGAGRPALERRYRHLREVEQGNPRRCRRQGQRRSARRRPRAAREGGGRGRQPGHDPTGAGRV
RPARRCQQHRFHRQRRWRGLLRP*
AnnotationID:6249GeneID:6248
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 16:04:11
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05088,COG2902
Secondary Functional Category(ies):putative enzyme
EC Number:1.4.1.4
Status:ACTIVE
Pathway:
Homology:
>dbj|BAC59865.1| (AP005078) putative NAD-glutamate dehydrogenase [Vibrio
           parahaemolyticus]
          Length = 1613

 Score =  807 bits (2084), Expect = 0.0
 Identities = 422/918 (45%), Positives = 593/918 (64%), Gaps = 15/918 (1%)

>gb|AAG40620.1|AF218569_1 (AF218569) NAD-glutamate dehydrogenase [Streptomyces clavuligerus]
          Length = 1651

 Score =  732 bits (1889), Expect = 0.0
 Identities = 420/946 (44%), Positives = 566/946 (59%), Gaps = 49/946 (5%)

Structural Features:
pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase. 

COG2902, NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Genomic Context:
Comment:
Inactivated 2/03/06.  PA14_24450 (GeneID 6248) and PA14_24460 (GeneID 6247) 
replaced by PA14_24455 (GeneID 7388).
ReferenceID:12348
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29612
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32443
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:6248_cdd.html
URL:
ReferenceID:35947
Author/Investigator(s): Lu CD, Abdelal AT.
Title: The gdhB gene of Pseudomonas aeruginosa encodes an arginine-inducible NAD(+)-dependent glutamate dehydrogenase which is subject to allosteric regulation.
PubMed: 11133942
MedLine:
Source:
J Bacteriol. 2001 Jan;183(2):490-9.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11133942
Homologs By Global Alignment
Gene ID:6248

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7962 PA3068_tr translation of PA3068 1669 59.85 61.17 543 4849.0
198762 gb|AAG06456.1|AE004731_4 (AE004731) NAD-dependent glutamate dehydrogenase [Pseudomonas aeruginosa PAO1] 1669 59.85 61.17 543 4849.0
198763 gb|AAG53963.1|AF315586_1 (AF315586) NAD(+)-dependent glutamate dehydrogenase [Pseudomonas aeruginosa] 1669 59.85 61.17 543 4849.0
198765 gb|AAO57226.1| (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 1679 49.55 55.27 565 4083.0
198764 gb|AAN67694.1|AE016400_2 (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440] 1736 48.38 53.45 634 4101.0
GC ORFID: 49250How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2823886Stop: 2820359
Length: 3528
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3068 translation of PA3068Homolog Bit Score 1879.0
Other Homologs: t_PA3068 translation of PA3068 (BLASTP 1879), psyr_15may02_Scaffold1_revised_gene753 related to: gi|15598264|ref|NP_251758.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa] pir||E83261 conserved hypothetical protein PA3068 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG06456.1|AE004731_4 (AE004731) conserved h-TRUNCATED- (BLASTP 1582)
GC ORF Sequence
ATGGCGTTCTTCACCGCGGCCAGCAAAGCCGATTTCCAGCATCAACTGCAGACGGCACTGGCGCAGCACCTC
GGCGACAAGGCGTTACCACAAGTCACGCTGTTCGCCGAACAGTTCTTCAGCCTGATCTCCCTCGATGAACTG
ACCCAGCGTCGGCTTTCCGACCTGGTCGGTTGCACCCTTTCCGCCTGGCGCCTGCTGGAGCGCTTCGACCGC
GACCAGCCCGAAGTCCGCGTATACAACCCCGACTACGAGAAGCACGGCTGGCAATCCACCCACACCGCGGTG
GAAGTGCTGCACCCGGACCTGCCGTTCCTGGTCGACTCGGTGCGCATGGAACTGAACCGTCGCGGCTACAGC
ATCCATACCCTGCAGACCAACGTCCTCAGCGTGCGCCGCTCGGCCAAGGGCGAGCTGAAGGAAATCCTGCCC
AAGGGTAGCCAAGGCAAGGACGTCAGCCAGGAATCGCTGATGTACCTGGAGATCGACCGTTGCGCCCACGCC
GGCGAACTGCGGGCGCTGGAGAAGGCCATCCTGGAAGTGCTCGGTGAAGTACGCGTGACCGTCGCCGACTTC
GAACCGATGAAGGCCAAGGCCCGCGAACTGCTGACCTGGCTTGGCAAGGCCAAGCTGAAGGTGCCGGCGGAG
GAACTGAAGGAAGTGCGCAGCTATCTCGAATGGCTGCTGGACAACCACTTCACCTTCCTCGGCTACGAGGAA
TTCAGCGTCGCCGACGAGGCCGACGGCGGGCGCATGGTCTACGACGAGAAATCCTTCCTCGGCCTGACCCGT
CTGCTGCGTGCCGGCCTGAGCAAGGATGACCTGCACATCGAGGACTATGCCGTCGCCTACCTGCGCGAACCG
GTCCTGCTGTCCTTCGCCAAGGCTGCCCATCCGAGCCGCGTGCACCGCCCGGCCTACCCGGACTACGTGTCG
ATCCGCGAGCTGGACGGCAAGGGCCGGGTGATCCGCGAGTGCCGCTTCATGGGCCTGTTCACCTCCTCGGTG
TACAACGAGAGCGTCAACGACATTCCCTTCATCCGCGGCAAGGTCGCCGAAGTGATGCGGCGCTCCGGTTTC
GACACCAAGGCCCACCTCGGCAAGGAACTGGCCCAGGTGCTGGAAGTACTGCCGCGCGACGACCTGTTCCAG
ACCCCGGTGGACGAGCTGTTCAGCACCGCCCTGGCGATCGTCCGCATCCAGGAGCGCAACAAGATCCGCGTG
TTCCTGCGCAAGGACCCCTACGGTCGCTTCTGCTACTGCCTGGCCTACGTGCCGCGCGACGTGTATTCCACC
GAGACGCGCCTGAAGATCCAGCAGGTCCTGATGGAGCGCCTGCAAGCCAGCGACTGCGAGTTCTGGACTTTC
TTCTCCGAGTCGGTGCTGGCCCGCGTGCAGTTCATCCTCCGCGTCGACCCGAAGTCGCGCATCGACATCGAC
CCGGCGCGCCTGGAGGAAGAAGTGATCCAGGCCTGCCGTTCCTGGCAGGACGACTACAGCAGCCTGGTGGTG
GAAAACCTCGGCGAGGCCAAGGGCACCAACGTCCTGGCCGACTTCCCGAAAGGCTTCCCGGCCGGCTATCGC
GAGCGCTTCGCCCCGCACTTCGCGGTGGTCGACCTGCAGCACCTGCTCAGCCTGTCCGAGCAGCGCCCGCTG
GTGATGAGCTTCTACCAGCCGCTGGCGCAGGGCGAGCAGCAACTGCACTGCAAGCTGTACCACGCCGACACC
CCGCTGGCCCTGTCCGACGTCCTGCCGATCCTGGAGAACCTCGGCCTGCGCGTGCTCGGCGAATTCCCCTAC
CGCCTGCGCCACCAGAACGGCCGCGAATACTGGATCCACGACTTCGCCTTCACCTACGCCGAAGGGCTGGAC
GTGGACATCCAGCAGCTCAACGAGATCCTCCAGGACGCCTTCGTCCACATCGTCAGCGGCGACGCCGAGAAC
GACGCCTTCAACCGCCTGGTGCTGACCGCCAACCTGCCGTGGCGCGACGTCGCCCTGCTGCGTGCCTACGCG
CGTTACCTGAAGCAGATCCGCCTGGGCTTCGACCTCGGCTACATCGCCAGTGCGCTGAATGCCCACACCGAC
ATCGCCCGCGAGCTGGTGCGGCTGTTCAAGACCCGCTTCTACCTGGCGCGCAAACTCACCGCGGAAGACCTG
GAAGACAAGCAACAGAAGCTGGAGCAGGCGATCCTCGGTGCCCTCGACGAAGTCCAGGTGCTCAACGAGGAC
CGCATCCTGCGGCGCTACCTCGACCTGATCAAGGCAACCCTGCGGACCAACTTCTACCAGCCCGACGGCAAC
GGCCAGAACAAGAGCTACTTCAGCTTCAAGTTCAACCCGAAGGCCATCCCGGAGCTGCCCAGGCCGGTGCCC
AAGTACGAGATCTTCGTCTACTCGCCGCGCGTCGAGGGCGTGCACCTGCGCGGCGGCAAGGTGGCTCGCGGC
GGCTTGCGCTGGTCGGACCGCGAGGAAGACTTCCGCACCGAGGTGCTCGGCCTGGTCAAGGCCCAGCAGGTG
AAGAACGCGGTGATCGTGCCGGTCGGCGCCAAGGGCGGCTTCGTCCCGCGCCGCCTGCCGCTTGGCGGTAGC
CGCGACGAGATCCAGGCCGAGGCGATCGCCTGCTACCGGATCTTCATTTCCGGCCTGCTCGACATCACCGAC
AACCTCAAGGAAGGCGAAGTGGTGCCGCCGGCCAACGTGGTCCGCCACGACGAGGACGATCCCTACCTGGTG
GTCGCCGCGGACAAGGGCACGGCGACCTTCTCCGACATCGCCAACGGCATCGCCGCCGAGTACGGTTTCTGG
CTCGGCGACGCCTTCGCCTCGGGGCGGCTCCGCCGGCTACGACCACAAGGGCATGGGGATTACCGCCAAGGG
CGCCTGGGTCAGCGTGCAACGGCACTTCCGCGAACGCGGCATCGACGTGCAGAAGGACAACATCAGCGTCAT
CGGCATCGGCGACATGGCCGGCGACGTGTTCGGCAACGGCCTGCTGATGTCGGACAAGCTGCAACTGGTGGC
CGCCTTCAACCACATGCATATCTTCATCGACCCGAACCCGGACGCCGCCAGCAGCTTCGTCGAGCGCCAGCG
CCTGTTCAACCTGCCGCGTTCGAGCTGGGCCGACTACGACGCCAAGCTGATCTCCGCCGGCGGCGGGATCTT
CCTGCGCAGCGCCAAGAGCATCGCCATCACCCCGGAAATGCAGGCGCGCTTCGACATCCAGGCCGACAGGCT
GGCGCCCACCGAGCTGATCCACGCGCTGCTCAAGGCGCCGGTCGACCTGCTCTGGAACGGCGGTATCGGCAC
CTACGTGAAGTCGAGCAAGGAAACCCACGCCGATGTCGGCGACAAGGCCAACGACGGTCTGCGCGTCGACGG
CCGCGAGCTGCGCGCGAAGGTGGTGGGCGAGGGCGGCAACCTGGGCATGACCCAACTGGCGCGGGTCGAGTT
CGGCCTGCACGGCGGTGCCAACAACACCGATTTCATCGACAACGTCGGTGGCGTGGACTGCTCCGACCATGA