ViewGene

Locus Name:
GeneID:
Location:

GeneID:6247
TrivialName: PA14_24460
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24460
PAO1 Ortholog Locus:
Sequence Length:2283
Protein Length:760
Start: 2132625
Stop: 2134906
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
Inactivated 2/03/06. PA14_24450 (GeneID 6248) and PA14_24460 (GeneID 6247) replaced by PA14_24455 (GeneID 7388). Homology: gb|AAG06456.1|AE004731_4 (AE004731) NAD-dependent glutamate dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 675/677 (99%), Positives = 676/677 (99%)
Sequence:
TTGGCGGTAGCCGCGACGAGATCCAGGCCGAGGCGATCGCCTGCTACCGGATCTTCATTTCCGGCCTGCTCG
ACATCACCGACAACCTCAAGGAAGGCGAAGTGGTGCCGCCGGCCAACGTGGTCCGCCACGACGAGGACGATC
CCTACCTGGTGGTCGCCGCGGACAAGGGCACGGCGACCTTCTCCGACATCGCCAACGGCATCGCCGCCGAGT
ACGGTTTCTGGCTCGGCGACGCCTTCGCCTCGGGGCGGCTCCGCCGGCTACGACCACAAGGGCATGGGGATT
ACCGCCAAGGGCGCCTGGGTCAGCGTGCAACGGCACTTCCGCGAACGCGGCATCGACGTGCAGAAGGACAAC
ATCAGCGTCATCGGCATCGGCGACATGGCCGGCGACGTGTTCGGCAACGGCCTGCTGATGTCGGACAAGCTG
CAACTGGTGGCCGCCTTCAACCACATGCATATCTTCATCGACCCGAACCCGGACGCCGCCAGCAGCTTCGTC
GAGCGCCAGCGCCTGTTCAACCTGCCGCGTTCGAGCTGGGCCGACTACGACGCCAAGCTGATCTCCGCCGGC
GGCGGGATCTTCCTGCGCAGCGCCAAGAGCATCGCCATCACCCCGGAAATGCAGGCGCGCTTCGACATCCAG
GCCGACAGGCTGGCGCCCACCGAGCTGATCCACGCGCTGCTCAAGGCGCCGGTCGACCTGCTCTGGAACGGC
GGTATCGGCACCTACGTGAAGTCGAGCAAGGAAACCCACGCCGATGTCGGCGACAAGGCCAACGACGGTCTG
CGCGTCGACGGCCGCGAGCTGCGCGCGAAGGTGGTGGGCGAGGGCGGCAACCTGGGCATGACCCAACTGGCG
CGGGTCGAGTTCGGCCTGCACGGCGGTGCCAACAACACCGATTTCATCGACAACGTCGGTGGCGTGGACTGC
TCCGACCATGAGGTCAACATCAAGATCCTGCTCAACGAAGTGGTGCAGGCCGGCGACATGACCGAGAAGCAG
CGCAACGCGCTGCTGGTGAAGATGACCGACGCGGTCGGCGCCCTGGTGCTGGGCAACAACTACAAGCAGACC
CAGGCGCTGTCCCTGGCGCAACGCCGCGCCCGCGAGCGGATCGCCGAATACAAGCGGCTGATGGGCGACCTC
GAGGCGCGCGGCAAGCTCGATCGCGCCCTGGAGTTCCTGCCTTCCGACGAGGAACTGGCGGAACGCATCAGT
GCCGGCCAGGGGCTGACCCGCGCCGAGCTGTCGGTGCTGATCTCCTACAGCAAGATCGACCTCAAGGAATCG
CTGCTGAAATCGCTGGTGCCGGACGACGACTACCTGACCCGCGACATGGAGACCGCCTTCCCGGCATTGCTG
GCGGAGAAGTTCGGCGACGCCATGCGCCGCCATCGCCTGAAGCGCGAGATCGTCAGCACGCAGATCGCCAAC
GACCTGGTCAACCACATGGGCATCACCTTCGTGCAGCGCCTGAAGGAGTCCACCGGCATGAGCGCGGCCAAC
GTCGCCGGGGCCTACGTGATCGTTCGCGACGTGTTCCACCTGCCGCACTGGTTCCGCCAGATCGAGAACCTC
GACTACCAGGTGCCCGCTGATATCCAGCTGACCCTGATGGACGAACTGATGCGTCTCGGTCGCCGCGCCACC
CGCTGGTTCCTCCGCAGCCGCCGCAACGAGCTGGACGCGGCGCGCGACGTGGCCCACTTCGGCCCGCGCATC
GCCGCCCTCGGCCTGAAGCTCAACGAGCTGCTCGAAGGGCCGACCCGCGAGCTGTGGCAGGCGCGCTACCAG
ACCTACGTCGACGCCGGCGTACCGGAACTGCTGGCACGCATGGTGGCCGGCACCAGCCACCTGTATACGCTG
CTGCCGATCATCGAGGCGTCCGACGTGACCGGCCAGGACACCGCGGAAGTGGCCAAGGCCTATTTCGCCGTG
GGCAGCGCGCTGGACCTTACCTGGTACCTGCAACAGATCACCAACCTGCCGGTGGAGAACAACTGGCAGGCG
CTGGCCCGCGAGGCGTTCCGCGACGACCTCGACTGGCAGCAGCGGGCGATCACCGTCTCGGTGTTGCAGATG
CAGGACGGACCGAAGGAGGTCGAGGCTCGCGTCGGCCTGTGGCTGGAACAACACCTGCCGCTGGTCGAGCGC
TGGCGGGCGATGCTGGTCGAACTGCGTGCCGCGTCGGGTACCGACTACGCCATGTACGCCGTGGCCAACCGC
GAGCTGATGGACCTGGCGCAGAGCAGCCAGCACGGTGTCTGCATCCCCTGA
Translation:
MAVAATRSRPRRSPATGSSFPACSTSPTTSRKAKWCRRPTWSATTRTIPTWWSPRTRARRPSPTSPTASPPS
TVSGSATPSPRGGSAGYDHKGMGITAKGAWVSVQRHFRERGIDVQKDNISVIGIGDMAGDVFGNGLLMSDKL
QLVAAFNHMHIFIDPNPDAASSFVERQRLFNLPRSSWADYDAKLISAGGGIFLRSAKSIAITPEMQARFDIQ
ADRLAPTELIHALLKAPVDLLWNGGIGTYVKSSKETHADVGDKANDGLRVDGRELRAKVVGEGGNLGMTQLA
RVEFGLHGGANNTDFIDNVGGVDCSDHEVNIKILLNEVVQAGDMTEKQRNALLVKMTDAVGALVLGNNYKQT
QALSLAQRRARERIAEYKRLMGDLEARGKLDRALEFLPSDEELAERISAGQGLTRAELSVLISYSKIDLKES
LLKSLVPDDDYLTRDMETAFPALLAEKFGDAMRRHRLKREIVSTQIANDLVNHMGITFVQRLKESTGMSAAN
VAGAYVIVRDVFHLPHWFRQIENLDYQVPADIQLTLMDELMRLGRRATRWFLRSRRNELDAARDVAHFGPRI
AALGLKLNELLEGPTRELWQARYQTYVDAGVPELLARMVAGTSHLYTLLPIIEASDVTGQDTAEVAKAYFAV
GSALDLTWYLQQITNLPVENNWQALAREAFRDDLDWQQRAITVSVLQMQDGPKEVEARVGLWLEQHLPLVER
WRAMLVELRAASGTDYAMYAVANRELMDLAQSSQHGVCIP*
AnnotationID:6248GeneID:6247
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 16:04:11
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05088,COG2902
Secondary Functional Category(ies):
EC Number:1.4.1.4
Status:ACTIVE
Pathway:
Homology:
>dbj|BAC59865.1| (AP005078) putative NAD-glutamate dehydrogenase [Vibrio
            parahaemolyticus]
          Length = 1613

 Score =  642 bits (1657), Expect = 0.0
 Identities = 330/666 (49%), Positives = 443/666 (66%), Gaps = 2/666 (0%)

>gb|AAO10986.1|AE016805_243 (AE016805) NAD-specific glutamate dehydrogenase [Vibrio vulnificus
           CMCP6]
          Length = 789

 Score =  631 bits (1628), Expect = e-180
 Identities = 329/666 (49%), Positives = 436/666 (65%), Gaps = 2/666 (0%)

Structural Features:
pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase.

COG2902, COG2902, NAD-specific glutamate dehydrogenase 
[Amino acid transport and metabolism]
Genomic Context:
Comment:
Inactivated 2/03/06.  PA14_24450 (GeneID 6248) and PA14_24460 (GeneID 6247) 
replaced by PA14_24455 (GeneID 7388).
ReferenceID:16052
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29610
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32444
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:6247_cdd.html
URL:
ReferenceID:35948
Author/Investigator(s): Lu CD, Abdelal AT.
Title: The gdhB gene of Pseudomonas aeruginosa encodes an arginine-inducible NAD(+)-dependent glutamate dehydrogenase which is subject to allosteric regulation.
PubMed: 11133942
MedLine:
Source:
J Bacteriol. 2001 Jan;183(2):490-9.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11133942
Homologs By Global Alignment
Gene ID:6247

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7961 PA3068_tr translation of PA3068 1633 42.62 42.98 886 3431.0
198730 gb|AAG06456.1|AE004731_4 (AE004731) NAD-dependent glutamate dehydrogenase [Pseudomonas aeruginosa PAO1] 1633 42.62 42.98 886 3431.0
198731 gb|AAG53963.1|AF315586_1 (AF315586) NAD(+)-dependent glutamate dehydrogenase [Pseudomonas aeruginosa] 1633 42.62 42.98 886 3431.0
198739 gb|AAO10986.1|AE016805_243 (AE016805) NAD-specific glutamate dehydrogenase [Vibrio vulnificus CMCP6] 844 40.87 54.14 139 1612.0
198732 gb|AAO57226.1| (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 1629 36.46 39.71 880 2960.0
GC ORFID: 49249How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2821305Stop: 2819023
Length: 2283
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3068 translation of PA3068Homolog Bit Score 1333.0
Other Homologs: t_PA3068 translation of PA3068 (BLASTP 1333), psyr_15may02_Scaffold1_revised_gene753 related to: gi|15598264|ref|NP_251758.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa] pir||E83261 conserved hypothetical protein PA3068 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG06456.1|AE004731_4 (AE004731) conserved h-TRUNCATED- (BLASTP 1154)
GC ORF Sequence
TTGGCGGTAGCCGCGACGAGATCCAGGCCGAGGCGATCGCCTGCTACCGGATCTTCATTTCCGGCCTGCTCG
ACATCACCGACAACCTCAAGGAAGGCGAAGTGGTGCCGCCGGCCAACGTGGTCCGCCACGACGAGGACGATC
CCTACCTGGTGGTCGCCGCGGACAAGGGCACGGCGACCTTCTCCGACATCGCCAACGGCATCGCCGCCGAGT
ACGGTTTCTGGCTCGGCGACGCCTTCGCCTCGGGGCGGCTCCGCCGGCTACGACCACAAGGGCATGGGGATT
ACCGCCAAGGGCGCCTGGGTCAGCGTGCAACGGCACTTCCGCGAACGCGGCATCGACGTGCAGAAGGACAAC
ATCAGCGTCATCGGCATCGGCGACATGGCCGGCGACGTGTTCGGCAACGGCCTGCTGATGTCGGACAAGCTG
CAACTGGTGGCCGCCTTCAACCACATGCATATCTTCATCGACCCGAACCCGGACGCCGCCAGCAGCTTCGTC
GAGCGCCAGCGCCTGTTCAACCTGCCGCGTTCGAGCTGGGCCGACTACGACGCCAAGCTGATCTCCGCCGGC
GGCGGGATCTTCCTGCGCAGCGCCAAGAGCATCGCCATCACCCCGGAAATGCAGGCGCGCTTCGACATCCAG
GCCGACAGGCTGGCGCCCACCGAGCTGATCCACGCGCTGCTCAAGGCGCCGGTCGACCTGCTCTGGAACGGC
GGTATCGGCACCTACGTGAAGTCGAGCAAGGAAACCCACGCCGATGTCGGCGACAAGGCCAACGACGGTCTG
CGCGTCGACGGCCGCGAGCTGCGCGCGAAGGTGGTGGGCGAGGGCGGCAACCTGGGCATGACCCAACTGGCG
CGGGTCGAGTTCGGCCTGCACGGCGGTGCCAACAACACCGATTTCATCGACAACGTCGGTGGCGTGGACTGC
TCCGACCATGAGGTCAACATCAAGATCCTGCTCAACGAAGTGGTGCAGGCCGGCGACATGACCGAGAAGCAG
CGCAACGCGCTGCTGGTGAAGATGACCGACGCGGTCGGCGCCCTGGTGCTGGGCAACAACTACAAGCAGACC
CAGGCGCTGTCCCTGGCGCAACGCCGCGCCCGCGAGCGGATCGCCGAATACAAGCGGCTGATGGGCGACCTC
GAGGCGCGCGGCAAGCTCGATCGCGCCCTGGAGTTCCTGCCTTCCGACGAGGAACTGGCGGAACGCATCAGT
GCCGGCCAGGGGCTGACCCGCGCCGAGCTGTCGGTGCTGATCTCCTACAGCAAGATCGACCTCAAGGAATCG
CTGCTGAAATCGCTGGTGCCGGACGACGACTACCTGACCCGCGACATGGAGACCGCCTTCCCGGCATTGCTG
GCGGAGAAGTTCGGCGACGCCATGCGCCGCCATCGCCTGAAGCGCGAGATCGTCAGCACGCAGATCGCCAAC
GACCTGGTCAACCACATGGGCATCACCTTCGTGCAGCGCCTGAAGGAGTCCACCGGCATGAGCGCGGCCAAC
GTCGCCGGGGCCTACGTGATCGTTCGCGACGTGTTCCACCTGCCGCACTGGTTCCGCCAGATCGAGAACCTC
GACTACCAGGTGCCCGCTGATATCCAGCTGACCCTGATGGACGAACTGATGCGTCTCGGTCGCCGCGCCACC
CGCTGGTTCCTCCGCAGCCGCCGCAACGAGCTGGACGCGGCGCGCGACGTGGCCCACTTCGGCCCGCGCATC
GCCGCCCTCGGCCTGAAGCTCAACGAGCTGCTCGAAGGGCCGACCCGCGAGCTGTGGCAGGCGCGCTACCAG
ACCTACGTCGACGCCGGCGTACCGGAACTGCTGGCACGCATGGTGGCCGGCACCAGCCACCTGTATACGCTG
CTGCCGATCATCGAGGCGTCCGACGTGACCGGCCAGGACACCGCGGAAGTGGCCAAGGCCTATTTCGCCGTG
GGCAGCGCGCTGGACCTTACCTGGTACCTGCAACAGATCACCAACCTGCCGGTGGAGAACAACTGGCAGGCG
CTGGCCCGCGAGGCGTTCCGCGACGACCTCGACTGGCAGCAGCGGGCGATCACCGTCTCGGTGTTGCAGATG
CAGGACGGACCGAAGGAGGTCGAGGCTCGCGTCGGCCTGTGGCTGGAACAACACCTGCCGCTGGTCGAGCGC
TGGCGGGCGATGCTGGTCGAACTGCGTGCCGCGTCGGGTACCGACTACGCCATGTACGCCGTGGCCAACCGC
GAGCTGATGGACCTGGCGCAGAGCAGCCAGCACGGTGTCTGCATCCCCTGA