ViewGene
Locus Name:
GeneID:
Location:

GeneID:6245
TrivialName: PA14_24520
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24520
PAO1 Ortholog Locus:
Sequence Length:969
Protein Length:322
Start: 2144732
Stop: 2143764
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAL42873.1| (AE009142) OmpA family protein [Agrobacterium tumefaciens str. C58 (U. Washington)]
Identities = 50/179 (27%), Positives = 73/179 (40%), Gaps = 21/179 (11%)
Sequence:
TTGCAGCATGTCGTCGGGCATTCCGGCGAGAAGCCGGGGGATGTCCCGGTAGCGCCGCTGGAAGAACGCCAC
CTCGGCGCGGAACGGCGCCAGCTGGGCGCTATCGATTCCCGCCTCCTCGGCGGCCTGGAGGGCGTGCCCGGC
ATCCTCCAGGCGGCCTTGTTCGAGGGCGATGCGTCCGGCCAGCAGATGCAGGTCGGCCGAGGGTGTGCCGCG
CAGCGCCTGGTCGGTATGCTCGCGCGCCTGCTCGAGGATGTGCTCCAGTACGCTGCCCTGGGCCAACCCCAG
GTAGGCCAGTTCCCAGTACCAGCGCGCCAGGGTCCCGTGCAGCGCGCCGCGTCGCGCCGGCGTGGCGCCGGC
GAGGCGGCCGAGGGCGGCCTCGATGCGCTGGTTGATCCGGCTTTCCTTCTGGTCGAGCATCGAGTAGGCCAG
CAGGCGGACGTCGTCGGCGGGGTCGCGCAGGGCCAGCTTGAGGATCGGGATCGCCTCCTTGCCGGGCATCCG
CCGGGTGGCGAAGATCGCCGTGAGCCGCTGGTTCGGGTCCGGCGCATGGCGCAGGACGTCCTGCAGACCGCC
GTCGCTGAACATCATGTCGAGGCGCTTTTCCTTCGGCCGGAACGGCAGCTCGGGGACGCCCATCGCCTGCCA
GGCCTGCTCGCCACGCTGGCGCGGCAGGTACAGCGCCGGGAATACCGCCGCAGCGACGCCGACCGCCCCGAT
CAGCGGCACGAAGAAGGCCAGGCTGAAGAGGAACAGCGGGCTCCACGGCAGCGGGAACTTGTAGCGCCGCGG
CAGCAGCAGCCATACGCCGACGCACAGCAGCGCGCTGCCCAGGCCGTGGGCGAACAGGTAGAGCGCCAGCGC
CTGACCGAACGGCAGGTCGGCGAAGACGCTCGCCCAACTGCTCAGCTCGAACAGGAAGGCGCCGCTAAACAG
CCACTTGCTGATCATTCAGGCCGCACTCGTTGA
Translation:
MQHVVGHSGEKPGDVPVAPLEERHLGAERRQLGAIDSRLLGGLEGVPGILQAALFEGDASGQQMQVGRGCAA
QRLVGMLARLLEDVLQYAALGQPQVGQFPVPARQGPVQRAASRRRGAGEAAEGGLDALVDPAFLLVEHRVGQ
QADVVGGVAQGQLEDRDRLLAGHPPGGEDRREPLVRVRRMAQDVLQTAVAEHHVEALFLRPERQLGDAHRLP
GLLATLARQVQRREYRRSDADRPDQRHEEGQAEEEQRAPRQRELVAPRQQQPYADAQQRAAQAVGEQVERQR
LTERQVGEDARPTAQLEQEGAAKQPLADHSGRTR*
AnnotationID:6246GeneID:6245
AnnotatorUID: danlee
Modification Date/Time: 2006-02-02 13:01:26
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:16048




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29606




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49247How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2809197Stop: 2810165

          
Length: 969


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
TTGCAGCATGTCGTCGGGCATTCCGGCGAGAAGCCGGGGGATGTCCCGGTAGCGCCGCTGGAAGAACGCCAC 
CTCGGCGCGGAACGGCGCCAGCTGGGCGCTATCGATTCCCGCCTCCTCGGCGGCCTGGAGGGCGTGCCCGGC 
ATCCTCCAGGCGGCCTTGTTCGAGGGCGATGCGTCCGGCCAGCAGATGCAGGTCGGCCGAGGGTGTGCCGCG 
CAGCGCCTGGTCGGTATGCTCGCGCGCCTGCTCGAGGATGTGCTCCAGTACGCTGCCCTGGGCCAACCCCAG 
GTAGGCCAGTTCCCAGTACCAGCGCGCCAGGGTCCCGTGCAGCGCGCCGCGTCGCGCCGGCGTGGCGCCGGC 
GAGGCGGCCGAGGGCGGCCTCGATGCGCTGGTTGATCCGGCTTTCCTTCTGGTCGAGCATCGAGTAGGCCAG 
CAGGCGGACGTCGTCGGCGGGGTCGCGCAGGGCCAGCTTGAGGATCGGGATCGCCTCCTTGCCGGGCATCCG 
CCGGGTGGCGAAGATCGCCGTGAGCCGCTGGTTCGGGTCCGGCGCATGGCGCAGGACGTCCTGCAGACCGCC 
GTCGCTGAACATCATGTCGAGGCGCTTTTCCTTCGGCCGGAACGGCAGCTCGGGGACGCCCATCGCCTGCCA 
GGCCTGCTCGCCACGCTGGCGCGGCAGGTACAGCGCCGGGAATACCGCCGCAGCGACGCCGACCGCCCCGAT 
CAGCGGCACGAAGAAGGCCAGGCTGAAGAGGAACAGCGGGCTCCACGGCAGCGGGAACTTGTAGCGCCGCGG 
CAGCAGCAGCCATACGCCGACGCACAGCAGCGCGCTGCCCAGGCCGTGGGCGAACAGGTAGAGCGCCAGCGC 
CTGACCGAACGGCAGGTCGGCGAAGACGCTCGCCCAACTGCTCAGCTCGAACAGGAAGGCGCCGCTAAACAG 
CCACTTGCTGATCATTCAGGCCGCACTCGTTGA