ViewGene
Locus Name:
GeneID:
Location:

GeneID:6243
TrivialName: PA14_24660
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24660
PAO1 Ortholog Locus:
Sequence Length:870
Protein Length:289
Start: 2155369
Stop: 2156237
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
Replaced by PA14_24665 (GeneID 7391). Homology: gb|AAG06436.1|AE004729_10 (AE004729) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 232/237 (97%), Positives = 233/237 (98%)
Sequence:
ATGAGGGTGCTTCCACTGACAAGGGCTACGGCCCGGGAAGGCGATATGGCTGATGTTTACGAATTGTTTCTG
ACCTGCCCGAAAGGCCTGGAAAGCCTGCTCCTCGAAGAGGCGCAGGGGCTCGGCCTGGACGAGGCGCGCGCC
CAGGTGTCGGCGGTGCGCGGGCAGGGCAGCCTGGAGGTGGCCTATCGCCTCTGCCTGTGGTCGCGCCTGGCC
AACCGGGTCTTGCTGGTGCTGGCGCGATTCCCGGTGGAGAACGCCGAGTCCATGTACATGGCGGTCCACGCG
GTGAACTGGGAAGACCACCTGGACGCCGGCGGCACGCTGGCGGTGGAGTTCAGCGGCAAGGGCTCGGGCATC
GACAACACCCATTTCGGGGCGCTGAAGGTCAAGGATGCGATCGTCGACAACCTGCGCGAGCGCTCCGGCCGA
CGTCCGTCGGTGGACAAGGTCAATCCGGACGTGCGCGTCCACCTGCACCTCGACCGCGGCCAGGCGACCCTT
TCCCTGGACCTCTCCGGGCATAGCCTGCACCAGCGCGGCTATCGTCTGCAGCAGGGCGCCGCGCCGCTGAAG
GAGAACCTGGCGGCGGCGGTGTTGATCCGTGCCGGCTGGCCGAAGATCGCCGCCGAGGGCGGTGCCCTGGCC
GACCCGATGTGTGGCGTCGGCACCTTCCTGGTCGAGGCGGCGCTGATGGCTGCccatatCGCGCCGAACCtc
aggCGCGAGCGCTGGGGCttcaGcaaATTGGCTGGGGcacgtGCCGGCGCTGTggcgccagctccacgagga
aGcCCAGCAGCGCGCGgcGGCcgGCCTGGCCAGgCcggccgttgTGGattcgcGGCTACGAGGCCGACCCGC
GCCTGA
Translation:
MRVLPLTRATAREGDMADVYELFLTCPKGLESLLLEEAQGLGLDEARAQVSAVRGQGSLEVAYRLCLWSRLA
NRVLLVLARFPVENAESMYMAVHAVNWEDHLDAGGTLAVEFSGKGSGIDNTHFGALKVKDAIVDNLRERSGR
RPSVDKVNPDVRVHLHLDRGQATLSLDLSGHSLHQRGYRLQQGAAPLKENLAAAVLIRAGWPKIAAEGGALA
DPMCGVGTFLVEAALMAAHIAPNLRRERWGFSKLAGARAGAVAPAPRGSPAARGGRPGQAGRCGFAATRPTR
A*
AnnotationID:6244GeneID:6243
AnnotatorUID: danlee
Modification Date/Time: 2006-02-07 15:03:45
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:
Replaced by PA14_24665 (GeneID 7391).
A possible (BUT UNCONFIRMED) frame-shift due to additional G at position 2156197 (ccaggccgGccgttgtgga).
Frame shift splits PAO1 PA3048 into two PA14 ORFS: PA14_24665 (GeneID 7391) and PA14_24675(GeneID 7392).


















    ReferenceID:12338




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29603




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36000




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6243_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6243
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7960
                           PA3048_tr
                           translation of PA3048
                           741
                           33.33
                           33.60
                           468
                           1181.0
     

     
     
198695
                           gb|AAG06436.1|AE004729_10
                           (AE004729) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           741
                           33.33
                           33.60
                           468
                           1181.0
     

     
     
198714
                           gb|AAR36477.1|
                           (AE017218) conserved hypothetical protein [Geobacter sulfurreducens PCA]
                           402
                           31.34
                           40.54
                           124
                           502.0
     

     
     
198717
                           dbj|BAC91982.1|
                           (AP006582) glr4041 [Gloeobacter violaceus PCC 7421]
                           396
                           28.53
                           40.65
                           129
                           487.0
     

     
     
198726
                           emb|CAE06861.1|
                           (BX569689) Putative RNA methylase family UPF0020 [Synechococcus sp. WH 8102]
                           398
                           28.14
                           37.18
                           119
                           394.0
     

     






      

          
GC ORFID: 49245How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2798560Stop: 2797691

          
Length: 870


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3048 translation of PA3048Homolog Bit Score 461.0

          
Other Homologs:  t_PA3048 translation of PA3048 (BLASTP 461), psyr_15may02_Scaffold1_revised_gene1080 related to: gi|15598244|ref|NP_251738.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa] pir||A83266 conserved hypothetical protein PA3048 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG06436.1|AE004729_10 (AE004729) conserved hy-TRUNCATED- (BLASTP 374)

          
GC ORF Sequence

           
ATGAGGGTGCTTCCACTGACAAGGGCTACGGCCCGGGAAGGCGATATGGCTGATGTTTACGAATTGTTTCTG 
ACCTGCCCGAAAGGCCTGGAAAGCCTGCTCCTCGAAGAGGCGCAGGGGCTCGGCCTGGACGAGGCGCGCGCC 
CAGGTGTCGGCGGTGCGCGGGCAGGGCAGCCTGGAGGTGGCCTATCGCCTCTGCCTGTGGTCGCGCCTGGCC 
AACCGGGTCTTGCTGGTGCTGGCGCGATTCCCGGTGGAGAACGCCGAGTCCATGTACATGGCGGTCCACGCG 
GTGAACTGGGAAGACCACCTGGACGCCGGCGGCACGCTGGCGGTGGAGTTCAGCGGCAAGGGCTCGGGCATC 
GACAACACCCATTTCGGGGCGCTGAAGGTCAAGGATGCGATCGTCGACAACCTGCGCGAGCGCTCCGGCCGA 
CGTCCGTCGGTGGACAAGGTCAATCCGGACGTGCGCGTCCACCTGCACCTCGACCGCGGCCAGGCGACCCTT 
TCCCTGGACCTCTCCGGGCATAGCCTGCACCAGCGCGGCTATCGTCTGCAGCAGGGCGCCGCGCCGCTGAAG 
GAGAACCTGGCGGCGGCGGTGTTGATCCGTGCCGGCTGGCCGAAGATCGCCGCCGAGGGCGGTGCCCTGGCC 
GACCCGATGTGTGGCGTCGGCACCTTCCTGGTCGAGGCGGCGCTGATGGCTGCccatatCGCGCCGAACCtc 
aggCGCGAGCGCTGGGGCttcaGcaaATTGGCTGGGGcacgtGCCGGCGCTGTggcgccagctccacgagga 
aGcCCAGCAGCGCGCGgcGGCcgGCCTGGCCAGgCcggccgttgTGGattcgcGGCTACGAGGCCGACCCGC 
GCCTGA