ViewGene
Locus Name:
GeneID:
Location:

GeneID:6242
TrivialName: PA14_24680
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24680
PAO1 Ortholog Locus:
Sequence Length:1308
Protein Length:435
Start: 2156285
Stop: 2157592
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Replaced by PA14_24675(GeneID 7392). A possible (BUT UNCONFIRMED) frame-shift due to additional G at position 2156197 (ccaggccgGccgttgtgga). Frame shift splits PAO1 PA3048 into two PA14 ORFS: PA14_24665 (GeneID 7391) and PA14_24675(GeneID 7392). Removal of this additional G would result in a single PA14 ORF that aligns with PAO1 PA3048: 720/725 (99%) Identity; 723/725 (99%) Similarity.
Sequence:
GTGAAGATCTACCAGGGCGAACTGGCGACTTTCGAGCCGCGCCCGGACAAGGGCCAGACCGGCCTGGTGATC
TGCAACCCGCCCTATGGCGAGCGCCTCGGCGACGAAGCCAGCCTGCTGTATCTCTACCAGAACCTCGGCGAG
CGCCTGCGCCAGAGCTGCATCGGCTGGAGCGCCGGGGTGTTCACCGGGGCGCCGGAACTGGGCAAGCGCATG
GGTATCCGCAGCCATAAGCAATACGCGTTCTGGAACGGCGCGCTGGCCTGCAAGCTGCTGATGATCCAGGTC
GAGCCGCGCCAGTTCGTCACCGGCGAGCGTGGCGAACGCAACGACGAAGGTCTGGCGCGGGCGCCGAGCGAG
CCGGCACGGCTGAGCGAGGGCGGGCAGATGTTCGCCAATCGCCTGCAGAAGAACCTCCGGCAACTGGGCAAA
TGGGCGCGCCGCGACAAGATCGAGTGCTATCGCCTGTATGACGCCGATATGCCGGAGTATGCCCTGGCGGTG
GATATCTACGGCGATTGGGTTCACGTCCAGGAGTACGCCGCGCCCAAGTCGATCGATCCGGCAAAAGCCCAG
GCGCGCCTGTTCGACGCCCTGGCGGCGATTCCGCAGACCCTGGGCGTTGCCCAGGAGCGGGTGGTGGTCAAG
CGCCGCGAGCGCCAGGCCGGCAAGAAGCAGTACGAACGGCAGAGCAGCGAGGGCAAGTTCCTCGAGGTGGGC
GAGGGCGATGTGCGCCTGCTGGTGAACCTGACCGATTACCTGGATACCGGGCTGTTCCTCGATCACCGGCCG
ATGCGCCTGCGCATCCAGAAGGAGGCGGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTATACCGCCACGGCC
ACCGTGCATGCGGCCAGGGGCGGCGCGCGCAGCACCACCAGCGTCGACCTGTCGAAGACCTACCTGGACTGG
GCGCGGCGCAACCTGTCGCTCAACGGCTTTTCCGACAAGCAGCGCCTGGTGCACGGCGACGTGATGGAGTGG
TTGCGGGAAGACGATGGCCAGTACGAACTGATCTTCATCGACCCGCCGACCTTCTCCAACTCCAAGCGTATG
GAAGGCGTGTTCGACGTGCAGCGCGACCACGTCGAACTGCTCGACCTGGCCATGGCGCGGCTGGCGCCGGGC
GGGGTGCTGTATTTCTCCAACAACTTCCGCAAGTTCGAACTGGACGAGAGCGTGCAGGCCCGCTATGCGGTC
GAAGAGATCACTGGCGAAACCCTCGATCCGGATTTCGCGCGTAATCCGAAGATCCATCGGGCCTGGAGAATC
ACCGTTCGCTGA
Translation:
MKIYQGELATFEPRPDKGQTGLVICNPPYGERLGDEASLLYLYQNLGERLRQSCIGWSAGVFTGAPELGKRM
GIRSHKQYAFWNGALACKLLMIQVEPRQFVTGERGERNDEGLARAPSEPARLSEGGQMFANRLQKNLRQLGK
WARRDKIECYRLYDADMPEYALAVDIYGDWVHVQEYAAPKSIDPAKAQARLFDALAAIPQTLGVAQERVVVK
RRERQAGKKQYERQSSEGKFLEVGEGDVRLLVNLTDYLDTGLFLDHRPMRLRIQKEAAGKRFLNLFCYTATA
TVHAARGGARSTTSVDLSKTYLDWARRNLSLNGFSDKQRLVHGDVMEWLREDDGQYELIFIDPPTFSNSKRM
EGVFDVQRDHVELLDLAMARLAPGGVLYFSNNFRKFELDESVQARYAVEEITGETLDPDFARNPKIHRAWRI
TVR*
AnnotationID:6243GeneID:6242
AnnotatorUID: danlee
Modification Date/Time: 2006-02-07 15:03:38
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1092
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
COG1092, COG1092, Predicted SAM-dependent methyltransferases






 
Structural Features:






   
Genomic Context:






   
Comment:
Replaced by PA14_24675(GeneID 7392).
A possible (BUT UNCONFIRMED) frame-shift due to additional G at position 2156197 (ccaggccgGccgttgtgga).
Frame shift splits PAO1 PA3048 into two PA14 ORFS: PA14_24665 (GeneID 7391) and PA14_24675(GeneID 7392).



















    ReferenceID:16046




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29601




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36002




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6242_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6242
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7959
                           PA3048_tr
                           translation of PA3048
                           725
                           60.00
                           60.00
                           290
                           2277.0
     

     
     
198662
                           gb|AAG06436.1|AE004729_10
                           (AE004729) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           725
                           60.00
                           60.00
                           290
                           2277.0
     

     
     
198663
                           gb|AAN67710.1|AE016402_2
                           (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440]
                           745
                           47.11
                           52.88
                           310
                           1872.0
     

     
     
198664
                           gb|AAO55825.1|
                           (AE016864) methylase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           762
                           45.53
                           51.18
                           327
                           1834.0
     

     
     
198689
                           gb|AAQ58779.1|
                           (AE016913) probable oxidoreductase [Chromobacterium violaceum ATCC 12472]
                           440
                           36.59
                           47.27
                           131
                           783.0
     

     






      

          
GC ORFID: 49244How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2797643Stop: 2796336

          
Length: 1308


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3048 translation of PA3048Homolog Bit Score 881.0

          
Other Homologs:  t_PA3048 translation of PA3048 (BLASTP 881), psyr_15may02_Scaffold1_revised_gene1080 related to: gi|15598244|ref|NP_251738.1| (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa] pir||A83266 conserved hypothetical protein PA3048 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG06436.1|AE004729_10 (AE004729) conserved hy-TRUNCATED- (BLASTP 698)

          
GC ORF Sequence

           
GTGAAGATCTACCAGGGCGAACTGGCGACTTTCGAGCCGCGCCCGGACAAGGGCCAGACCGGCCTGGTGATC 
TGCAACCCGCCCTATGGCGAGCGCCTCGGCGACGAAGCCAGCCTGCTGTATCTCTACCAGAACCTCGGCGAG 
CGCCTGCGCCAGAGCTGCATCGGCTGGAGCGCCGGGGTGTTCACCGGGGCGCCGGAACTGGGCAAGCGCATG 
GGTATCCGCAGCCATAAGCAATACGCGTTCTGGAACGGCGCGCTGGCCTGCAAGCTGCTGATGATCCAGGTC 
GAGCCGCGCCAGTTCGTCACCGGCGAGCGTGGCGAACGCAACGACGAAGGTCTGGCGCGGGCGCCGAGCGAG 
CCGGCACGGCTGAGCGAGGGCGGGCAGATGTTCGCCAATCGCCTGCAGAAGAACCTCCGGCAACTGGGCAAA 
TGGGCGCGCCGCGACAAGATCGAGTGCTATCGCCTGTATGACGCCGATATGCCGGAGTATGCCCTGGCGGTG 
GATATCTACGGCGATTGGGTTCACGTCCAGGAGTACGCCGCGCCCAAGTCGATCGATCCGGCAAAAGCCCAG 
GCGCGCCTGTTCGACGCCCTGGCGGCGATTCCGCAGACCCTGGGCGTTGCCCAGGAGCGGGTGGTGGTCAAG 
CGCCGCGAGCGCCAGGCCGGCAAGAAGCAGTACGAACGGCAGAGCAGCGAGGGCAAGTTCCTCGAGGTGGGC 
GAGGGCGATGTGCGCCTGCTGGTGAACCTGACCGATTACCTGGATACCGGGCTGTTCCTCGATCACCGGCCG 
ATGCGCCTGCGCATCCAGAAGGAGGCGGCCGGCAAGCGCTTCCTCAACCTGTTCTGCTATACCGCCACGGCC 
ACCGTGCATGCGGCCAGGGGCGGCGCGCGCAGCACCACCAGCGTCGACCTGTCGAAGACCTACCTGGACTGG 
GCGCGGCGCAACCTGTCGCTCAACGGCTTTTCCGACAAGCAGCGCCTGGTGCACGGCGACGTGATGGAGTGG 
TTGCGGGAAGACGATGGCCAGTACGAACTGATCTTCATCGACCCGCCGACCTTCTCCAACTCCAAGCGTATG 
GAAGGCGTGTTCGACGTGCAGCGCGACCACGTCGAACTGCTCGACCTGGCCATGGCGCGGCTGGCGCCGGGC 
GGGGTGCTGTATTTCTCCAACAACTTCCGCAAGTTCGAACTGGACGAGAGCGTGCAGGCCCGCTATGCGGTC 
GAAGAGATCACTGGCGAAACCCTCGATCCGGATTTCGCGCGTAATCCGAAGATCCATCGGGCCTGGAGAATC 
ACCGTTCGCTGA