ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6239

TrivialName: PA14_24800

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_24800

PAO1 Ortholog Locus:

Sequence Length: 1503

Protein Length: 500

Start: 2170282

Stop: 2168780

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK62517.1| (AY034092) putative hydroxyproline-rich protein [Micrococcus sp. 28] Identities = 111/384 (28%), Positives = 133/384 (34%), Gaps = 81/384 (21%)

Sequence:

ATGGACGGGTCCTGGCGCGGGACGGAAAGGGTTTCACGGTCGGCGTCGAGCAGTCCTTCGGCAACTGTCCCA
AGTACATCCAGGCGCGCAGCCATCAGCCCGTCTCCAGGATCGCAAGTCCCGCGTTGCAGGGCGAAGGACTCG
ATCCGCGCTGGCTGTCGCTGGTCTCGCGCAGCGATACGCTGTTCATCGCCAGCCAGCATGCCGACCCGCTCA
GGGGCGGCGTCGACGTCTCCCATCGGGGCGGGCCGCCGGGCTTTCTCCGGCTCGGCGCGGATGACCGCCTGT
GGTTGCCCGACTACGCCGGCAACCGCCTGTTCAATACCCTCGGCAACCTGCTCCAGGAGCCTCGCTGCGGCC
TCCTGTTCATCGATTTCGACAACGGCGACCTGCTGCACCTGCACGCCGAGGCCGAGCTGTTCTGGCCGGGTT
CGCAGCCATCCATCCCCTGGCCCGCCGGCGCCGAGCGCCTGCTGGCGTTGCGCCCCGCAGGCTGGCGCTGGC
GGCGCGGCCGCCTGCCGCTGGCATTCGGCGAGCCCCAGCCATCCCCTTTTCTTCCTGCCGGTGAATCTTGAT
GCCTTTCCTGTATCGCCTTGCCTCGTTGTTGATCGCCCTCCTCGTCCTGCCGGTGCAGGCGGCGGAAATGCG
AGTCGCCCTGTTGCGCACCTCGGGAGTGGAAACCCTCGATGCGCTCACCGTCGACGGCGGCTCCTGGGTGCG
CCGGGTGCCGCTCAGCCATACCGCGGTGCTGATCGAGCACCATGCCGCCACCCTGCTCTTCGACACTGGCCT
GGGGCGCGACATCGACGCCCAGTTCCGCGCCGACATGCCCTGGTGGGCGGCGCCGCTGTTCGCTTACCAGAA
AGTCGTCCCGGCGCGCGACCAACTGGACGCAGCCGGTATCCGCGTCGATCGCATCCTGCTGTCCCACGCACA
CTGGGATCACGCCTCGGGCCTGGTCGACTTCCCCGAAGTACCGGTCTGGGCACCCTACGAGGAGATCGCCTT
CAGCCGCATCGCCACCCCGCCGGCCGCCTTCCCCAGCCAATTCCGCCATGGCGTGCGCTGGCGACCTTACAG
CTTCGATCCGCAGCCGTTCATGGGCTTCGACGAAAGCCTCGACCTGTTTGGCGACGGCCGCCTGGTGCTGGT
CCCCCTGCCCGGCCATACGCCCGGCTCAGTCGGTCTGTTCGTCACCCTCGACAGCGGGCGCCGGCTGTTCTT
CAGCGGCGACACCAGTTGGCGACTCGAAGGCGTCGAAGGCCCACGGCAGAAATTCTTCGCCGGCCGCGCCCT
GGTCGATCGCGATCCCGCGCGCACCCTCGCGCAACTGGCGAAGATCCGCCTGCTGCTCCGCAGCGACCCGCG
CCTGAGCGTGATTCCGGCGCACGATGCGCGGGTCCAGGCCGCCCTGGGCTACTTCCCGCACTGGCTGGAATA
GCGGGAAAGCCCGTCCTAGACAGGGTTCGTGCCAATTCGCGGCCACCCTCGACTAATGTCTAA

Translation:

MDGSWRGTERVSRSASSSPSATVPSTSRRAAISPSPGSQVPRCRAKDSIRAGCRWSRAAIRCSSPASMPTRS
GAASTSPIGAGRRAFSGSARMTACGCPTTPATACSIPSATCSRSLAAASCSSISTTATCCTCTPRPSCSGRV
RSHPSPGPPAPSACWRCAPQAGAGGAAACRWHSASPSHPLFFLPVNLDAFPVSPCLVVDRPPRPAGAGGGNA
SRPVAHLGSGNPRCAHRRRRLLGAPGAAQPYRGADRAPCRHPALRHWPGARHRRPVPRRHALVGGAAVRLPE
SRPGARPTGRSRYPRRSHPAVPRTLGSRLGPGRLPRSTGLGTLRGDRLQPHRHPAGRLPQPIPPWRALATLQ
LRSAAVHGLRRKPRPVWRRPPGAGPPARPYARLSRSVRHPRQRAPAVLQRRHQLATRRRRRPTAEILRRPRP
GRSRSRAHPRATGEDPPAAPQRPAPERDSGARCAGPGRPGLLPALAGIAGKPVLDRVRANSRPPSTNV*

AnnotationID:6240 GeneID:6239

AnnotatorUID: diggins

Modification Date/Time: 2004-11-24 08:08:54

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:12330

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29595

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36007

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6239_cdd.html

URL:

GC ORFID: `49241`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2783646`	Stop: `2785148`
Length: `1503`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGACGGGTCCTGGCGCGGGACGGAAAGGGTTTCACGGTCGGCGTCGAGCAGTCCTTCGGCAACTGTCCCA AGTACATCCAGGCGCGCAGCCATCAGCCCGTCTCCAGGATCGCAAGTCCCGCGTTGCAGGGCGAAGGACTCG ATCCGCGCTGGCTGTCGCTGGTCTCGCGCAGCGATACGCTGTTCATCGCCAGCCAGCATGCCGACCCGCTCA GGGGCGGCGTCGACGTCTCCCATCGGGGCGGGCCGCCGGGCTTTCTCCGGCTCGGCGCGGATGACCGCCTGT GGTTGCCCGACTACGCCGGCAACCGCCTGTTCAATACCCTCGGCAACCTGCTCCAGGAGCCTCGCTGCGGCC TCCTGTTCATCGATTTCGACAACGGCGACCTGCTGCACCTGCACGCCGAGGCCGAGCTGTTCTGGCCGGGTT CGCAGCCATCCATCCCCTGGCCCGCCGGCGCCGAGCGCCTGCTGGCGTTGCGCCCCGCAGGCTGGCGCTGGC GGCGCGGCCGCCTGCCGCTGGCATTCGGCGAGCCCCAGCCATCCCCTTTTCTTCCTGCCGGTGAATCTTGAT GCCTTTCCTGTATCGCCTTGCCTCGTTGTTGATCGCCCTCCTCGTCCTGCCGGTGCAGGCGGCGGAAATGCG AGTCGCCCTGTTGCGCACCTCGGGAGTGGAAACCCTCGATGCGCTCACCGTCGACGGCGGCTCCTGGGTGCG CCGGGTGCCGCTCAGCCATACCGCGGTGCTGATCGAGCACCATGCCGCCACCCTGCTCTTCGACACTGGCCT GGGGCGCGACATCGACGCCCAGTTCCGCGCCGACATGCCCTGGTGGGCGGCGCCGCTGTTCGCTTACCAGAA AGTCGTCCCGGCGCGCGACCAACTGGACGCAGCCGGTATCCGCGTCGATCGCATCCTGCTGTCCCACGCACA CTGGGATCACGCCTCGGGCCTGGTCGACTTCCCCGAAGTACCGGTCTGGGCACCCTACGAGGAGATCGCCTT CAGCCGCATCGCCACCCCGCCGGCCGCCTTCCCCAGCCAATTCCGCCATGGCGTGCGCTGGCGACCTTACAG CTTCGATCCGCAGCCGTTCATGGGCTTCGACGAAAGCCTCGACCTGTTTGGCGACGGCCGCCTGGTGCTGGT CCCCCTGCCCGGCCATACGCCCGGCTCAGTCGGTCTGTTCGTCACCCTCGACAGCGGGCGCCGGCTGTTCTT CAGCGGCGACACCAGTTGGCGACTCGAAGGCGTCGAAGGCCCACGGCAGAAATTCTTCGCCGGCCGCGCCCT GGTCGATCGCGATCCCGCGCGCACCCTCGCGCAACTGGCGAAGATCCGCCTGCTGCTCCGCAGCGACCCGCG CCTGAGCGTGATTCCGGCGCACGATGCGCGGGTCCAGGCCGCCCTGGGCTACTTCCCGCACTGGCTGGAATA GCGGGAAAGCCCGTCCTAGACAGGGTTCGTGCCAATTCGCGGCCACCCTCGACTAATGTCTAA