ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6238

TrivialName: PA14_24930

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_24930

PAO1 Ortholog Locus:

Sequence Length: 1698

Protein Length: 565

Start: 2179806

Stop: 2178109

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53451.1| (AY032926) putative PHA synthase [Streptomyces aureofaciens] Identities = 89/325 (27%), Positives = 113/325 (34%), Gaps = 57/325 (17%)

Sequence:

GTGGTCCTTGCCAACGCCATGCTGGTGGCTGATGGTGCCGCGATTGTCGACGATCGCCTGGCTGGCCGCATG
CTTGAGACGCTTCCAGCGCTCCAGCGTCGCCGCATAGCTCGCGGCAGGACGGAACACGTAGGTGGTATAGAT
GCTCGACCCCTCGCCATAGACATGCGAGAGGTGGGTGAACACATGGACCTTCTCGCCCTCGGCGGCCAGGCC
GTCGCGCAGGCTGGCCTCGATCTTCTGCAGCAGGCCGTCGACGTTGCTCCAGTCGGTGGCGGTCTCCAGGGT
GTCCACGGCGTAGCCCGCCTGCCACAGGGCCTCGCGCAGGTAGGGGAAGCGGAAGCGGTTCTGCGCCCACTT
GCGCCCCAGCAGGGTGCCGGTGAAGACCCCGCCGAAGCGTTTCAGCAAGGCCTTCGCCTGGCTCAGCGACAA
TCCGTTCTGCCGACGGTTGCCGGTCACGCCGAAGGTCAGCATGCACTTGCCCTCGCCCGCGCCGCGCAGTGC
CAGGTATTTCTCCAGCCAGGCGATCTGTCCGGGATGGCCGGCCAGGGCCAGCTGGGTCATGGTTTCCACGGC
GTTGGACAGGCGCAGCATCGACAGCGGCACGCGCGCCTGGGCCAGCTCGCGGGTGGCTTGCAGGGCCTGCTG
CCAGTTCGGCAGGAAGACGCTGTAGAAGCGCTCGTCCTCGGCCAGCGGCGAGACCCGCACCTTCACCGAGGA
AATGATCCCGAAGCGTCCCTCAGAGCCCAGCACCAGTTCGCGCAGGTCCGGTCCCGCCGCGGATGCCGGGAA
GGTAGCGATTTCAAGCGGCCCGGCGAAGGTCTCCAGGGTCCCGCCGGCGAAAAGTTGTTCGATCCGCCCATA
GCGCAGCGACTGCTGGCCACTGGAGCGGCTGGCGACCCAGCCACCGAGGGTCGACAACTCCCAGGACTGCGG
GAAATGCCCGAGCGTGTAGCCCAGCGCACGCAACTGGCTCTCCACCTGCGGGCCGGCGGCGCCGGGGCCGAA
GGTCGCGACCAGGCTCTCGCGGTCCAGATCGATCAGGCGGTTCATGCGCTCCAGCGAGACCGTCAGTACCGG
CCGCCGCGAGGCTTGCGGATTGATATGGCCGGCCACGGAAGTACCGCCGCCATAGGGAATCAGTTGCAGGTC
GCGGGAGTCGGCCAGGGCCAGCAACTCGCGGATCTGCTCGGCGGTTTCCGGATAGGCCACGGCGTCCGGGTA
GACGCCGAAGTCGCCCTCGCGCATCGCCAGCCAGTCCGGCAGGCTCTGCCCGCGGGCATGCAGCAGACGCTC
ACGGGGGGCGATGCTGTAGCGCGGATCGGCCTCCAGGCGCGATGCCGGGACCTTCGCCAGCGCCGCCTCCAG
GCTGGCGTCCGGCAAGCGTGCGCCCTGCCCGACCAGTTCCGCCAGGAACCCACGGGCGCTGTCCGGCAATTC
GACCACGGTGCTTTCTTCGCCCCAGCCATTCCAACGACGCATGAACCTCTCCCCTCGCTTGTCGCGGCAACC
TGTTTATCGGAACCTTTCTGGCTGCCTATACTAGCCAGCCGCCCTCGCCTGTCACTGTCGGATCGAGACACT
CCCTGTGACCGATCAAGACAGCCGGCACGCACGCCGGACGGCCTGTTCCACCCGCCACGACAAGAACAACGA
CCATGCAGACCCTTGGCTCCACCTCGGTTCCGGCCCTGCTGA

Translation:

MVLANAMLVADGAAIVDDRLAGRMLETLPALQRRRIARGRTEHVGGIDARPLAIDMREVGEHMDLLALGGQA
VAQAGLDLLQQAVDVAPVGGGLQGVHGVARLPQGLAQVGEAEAVLRPLAPQQGAGEDPAEAFQQGLRLAQRQ
SVLPTVAGHAEGQHALALARAAQCQVFLQPGDLSGMAGQGQLGHGFHGVGQAQHRQRHARLGQLAGGLQGLL
PVRQEDAVEALVLGQRRDPHLHRGNDPEASLRAQHQFAQVRSRRGCREGSDFKRPGEGLQGPAGEKLFDPPI
AQRLLATGAAGDPATEGRQLPGLREMPERVAQRTQLALHLRAGGAGAEGRDQALAVQIDQAVHALQRDRQYR
PPRGLRIDMAGHGSTAAIGNQLQVAGVGQGQQLADLLGGFRIGHGVRVDAEVALAHRQPVRQALPAGMQQTL
TGGDAVARIGLQARCRDLRQRRLQAGVRQACALPDQFRQEPTGAVRQFDHGAFFAPAIPTTHEPLPSLVAAT
CLSEPFWLPILASRPRLSLSDRDTPCDRSRQPARTPDGLFHPPRQEQRPCRPLAPPRFRPC*

AnnotationID:6239 GeneID:6238

AnnotatorUID: diggins

Modification Date/Time: 2004-11-25 07:07:26

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16042

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29593

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36016

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6238_cdd.html

URL:

GC ORFID: `49240`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2774122`	Stop: `2775819`
Length: `1698`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGGTCCTTGCCAACGCCATGCTGGTGGCTGATGGTGCCGCGATTGTCGACGATCGCCTGGCTGGCCGCATG CTTGAGACGCTTCCAGCGCTCCAGCGTCGCCGCATAGCTCGCGGCAGGACGGAACACGTAGGTGGTATAGAT GCTCGACCCCTCGCCATAGACATGCGAGAGGTGGGTGAACACATGGACCTTCTCGCCCTCGGCGGCCAGGCC GTCGCGCAGGCTGGCCTCGATCTTCTGCAGCAGGCCGTCGACGTTGCTCCAGTCGGTGGCGGTCTCCAGGGT GTCCACGGCGTAGCCCGCCTGCCACAGGGCCTCGCGCAGGTAGGGGAAGCGGAAGCGGTTCTGCGCCCACTT GCGCCCCAGCAGGGTGCCGGTGAAGACCCCGCCGAAGCGTTTCAGCAAGGCCTTCGCCTGGCTCAGCGACAA TCCGTTCTGCCGACGGTTGCCGGTCACGCCGAAGGTCAGCATGCACTTGCCCTCGCCCGCGCCGCGCAGTGC CAGGTATTTCTCCAGCCAGGCGATCTGTCCGGGATGGCCGGCCAGGGCCAGCTGGGTCATGGTTTCCACGGC GTTGGACAGGCGCAGCATCGACAGCGGCACGCGCGCCTGGGCCAGCTCGCGGGTGGCTTGCAGGGCCTGCTG CCAGTTCGGCAGGAAGACGCTGTAGAAGCGCTCGTCCTCGGCCAGCGGCGAGACCCGCACCTTCACCGAGGA AATGATCCCGAAGCGTCCCTCAGAGCCCAGCACCAGTTCGCGCAGGTCCGGTCCCGCCGCGGATGCCGGGAA GGTAGCGATTTCAAGCGGCCCGGCGAAGGTCTCCAGGGTCCCGCCGGCGAAAAGTTGTTCGATCCGCCCATA GCGCAGCGACTGCTGGCCACTGGAGCGGCTGGCGACCCAGCCACCGAGGGTCGACAACTCCCAGGACTGCGG GAAATGCCCGAGCGTGTAGCCCAGCGCACGCAACTGGCTCTCCACCTGCGGGCCGGCGGCGCCGGGGCCGAA GGTCGCGACCAGGCTCTCGCGGTCCAGATCGATCAGGCGGTTCATGCGCTCCAGCGAGACCGTCAGTACCGG CCGCCGCGAGGCTTGCGGATTGATATGGCCGGCCACGGAAGTACCGCCGCCATAGGGAATCAGTTGCAGGTC GCGGGAGTCGGCCAGGGCCAGCAACTCGCGGATCTGCTCGGCGGTTTCCGGATAGGCCACGGCGTCCGGGTA GACGCCGAAGTCGCCCTCGCGCATCGCCAGCCAGTCCGGCAGGCTCTGCCCGCGGGCATGCAGCAGACGCTC ACGGGGGGCGATGCTGTAGCGCGGATCGGCCTCCAGGCGCGATGCCGGGACCTTCGCCAGCGCCGCCTCCAG GCTGGCGTCCGGCAAGCGTGCGCCCTGCCCGACCAGTTCCGCCAGGAACCCACGGGCGCTGTCCGGCAATTC GACCACGGTGCTTTCTTCGCCCCAGCCATTCCAACGACGCATGAACCTCTCCCCTCGCTTGTCGCGGCAACC TGTTTATCGGAACCTTTCTGGCTGCCTATACTAGCCAGCCGCCCTCGCCTGTCACTGTCGGATCGAGACACT CCCTGTGACCGATCAAGACAGCCGGCACGCACGCCGGACGGCCTGTTCCACCCGCCACGACAAGAACAACGA CCATGCAGACCCTTGGCTCCACCTCGGTTCCGGCCCTGCTGA