ViewGene
Locus Name:
GeneID:
Location:

GeneID:6233
TrivialName: PA14_25170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25170
PAO1 Ortholog Locus:
Sequence Length:783
Protein Length:260
Start: 2202453
Stop: 2201671
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAC50302.1| (AP005953) delta_aminolevulinic acid dehydratase [Bradyrhizobium japonicum USDA 110]
Identities = 47/166 (28%), Positives = 69/166 (41%), Gaps = 32/166 (19%)
Sequence:
ATGGAGTTCCGCCCGGAGCACAGAGAAAGGAGAAAGGAAAACGGCGCCCTCGGGCGCCGTCTGCGATCAGGC
CTTGGCGGGCGTCTTGTTCCGCGGGCGCAGTTGCGCCCCGGCCAGCAGCGGATCGTCGATGCCGCTCTCGGC
GCGCATGCCGGCGGCGAAGAACGGCACCATCAGGTGCATCACCTGCTCGGTGGAAGTGTTCACGCCGAAATC
GGTTTCCGCCATCGCCCGCAGGGCCTTGATCCCCGACATGCTGAAGGCGGCCGCGCCGAGCATGAAGTGCAC
GCGCCAGAACAGCTCGATGGGCGGCAGCTTCGGCGCCGCCTCGTTGACCAGCAGCATGTAGCGCCGGAAGAC
CTTGCCGTAGACCTCTTCCAGGTACTTGCGCAGGTGCCCCTGGCTCTGGCTGAAGGCCAGGCCGAGCAAGCG
CATGAAGATCGACAGGTCGTTGCCGCTGCGCGGCTTCACCGCCATCGCCTGGGACACCAGCAGGTGCAGGAG
GTCCTCCAGGGTGGCGTGCTGGGCCTCGGGCTTGGCCTGGCGACGATCCAGCTCCTTTTCCAGGCTGGCGCA
GAATGGCCCGAGGAAGCGCGAGAACACCGCCTGGATCAGCGCCTTCTTCGAACCGAAGTGATAATTCACCGC
CGCCAGGTTGACCCCGGCCTTGCTGGTGATCAGACGCAACGAGGTTTCGGCGAAGCCTTTTTCCGCGAACAG
CTGTTCCGCCGCATCGAGAATGCGTTCGACGGTTTCCGACTGGGCCATGGTTTCTCCGCCTGA
Translation:
MEFRPEHRERRKENGALGRRLRSGLGGRLVPRAQLRPGQQRIVDAALGAHAGGEERHHQVHHLLGGSVHAEI
GFRHRPQGLDPRHAEGGRAEHEVHAPEQLDGRQLRRRLVDQQHVAPEDLAVDLFQVLAQVPLALAEGQAEQA
HEDRQVVAAARLHRHRLGHQQVQEVLQGGVLGLGLGLATIQLLFQAGAEWPEEAREHRLDQRLLRTEVIIHR
RQVDPGLAGDQTQRGFGEAFFREQLFRRIENAFDGFRLGHGFSA*
AnnotationID:6234GeneID:6233
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 18:06:03
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:12318




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29584




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49235How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2751474Stop: 2752256

          
Length: 783


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGAGTTCCGCCCGGAGCACAGAGAAAGGAGAAAGGAAAACGGCGCCCTCGGGCGCCGTCTGCGATCAGGC 
CTTGGCGGGCGTCTTGTTCCGCGGGCGCAGTTGCGCCCCGGCCAGCAGCGGATCGTCGATGCCGCTCTCGGC 
GCGCATGCCGGCGGCGAAGAACGGCACCATCAGGTGCATCACCTGCTCGGTGGAAGTGTTCACGCCGAAATC 
GGTTTCCGCCATCGCCCGCAGGGCCTTGATCCCCGACATGCTGAAGGCGGCCGCGCCGAGCATGAAGTGCAC 
GCGCCAGAACAGCTCGATGGGCGGCAGCTTCGGCGCCGCCTCGTTGACCAGCAGCATGTAGCGCCGGAAGAC 
CTTGCCGTAGACCTCTTCCAGGTACTTGCGCAGGTGCCCCTGGCTCTGGCTGAAGGCCAGGCCGAGCAAGCG 
CATGAAGATCGACAGGTCGTTGCCGCTGCGCGGCTTCACCGCCATCGCCTGGGACACCAGCAGGTGCAGGAG 
GTCCTCCAGGGTGGCGTGCTGGGCCTCGGGCTTGGCCTGGCGACGATCCAGCTCCTTTTCCAGGCTGGCGCA 
GAATGGCCCGAGGAAGCGCGAGAACACCGCCTGGATCAGCGCCTTCTTCGAACCGAAGTGATAATTCACCGC 
CGCCAGGTTGACCCCGGCCTTGCTGGTGATCAGACGCAACGAGGTTTCGGCGAAGCCTTTTTCCGCGAACAG 
CTGTTCCGCCGCATCGAGAATGCGTTCGACGGTTTCCGACTGGGCCATGGTTTCTCCGCCTGA