ViewGene
Locus Name:
GeneID:
Location:

GeneID:6232
TrivialName: PA14_25200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25200
PAO1 Ortholog Locus:
Sequence Length:246
Protein Length:81
Start: 2203343
Stop: 2203587
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: TRUE
Missense Discrepancy:TRUE
Comments:
Homology: gb|AAG06393.1|AE004725_6 (AE004725) beta-N-acetyl-D-glucosaminidase [Pseudomonas aeruginosa PAO1]
Identities = 45/45 (100%), Positives = 45/45 (100%)
Sequence:
ATGTGGTCGGCGACGCCGCCAGCCGCATCGAGGCCGCCCTGGCCGCGGGCTGCGACATGGGTCTGGTGTGCA
ACGACCGGGCTTCCGCCGAGCTGGCCCTGGCTGccCCTGCAACGCCTGAAGGTGACCCCGCCGTCGCGTCTG
CAACGCATGCGCGGCAAGGGCTACGCGAATACCGACTATCGCCAGCAGCCGCGCTGGCTGGAAGCACTGTCC
GCGTTGCGCGCCGCGCAACTGATTGATTGA
Translation:
MWSATPPAASRPPWPRAATWVWCATTGLPPSWPWLPLQRLKVTPPSRLQRMRGKGYANTDYRQQPRWLEALS
ALRAAQLID*
AnnotationID:6233GeneID:6232
AnnotatorUID: danlee
Modification Date/Time: 2006-02-01 13:01:55
Gene Name:
Confidence Code:4
GeneProduct:
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:()
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:
>gb|AAN67758.1|AE016407_2 (AE016782) beta-hexosaminidase [Pseudomonas putida KT2440]
          Length = 336

 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 31/44 (70%), Positives = 37/44 (84%)

>gb|AAM52310.1|AF502251_3 (AF502251) beta-N-acetylglucosaminidase-like protein [Pseudomonas
           chlororaphis]
          Length = 332

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 31/44 (70%), Positives = 36/44 (81%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:12316




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29582




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49234How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2750584Stop: 2750339

          
Length: 246


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGTGGTCGGCGACGCCGCCAGCCGCATCGAGGCCGCCCTGGCCGCGGGCTGCGACATGGGTCTGGTGTGCA 
ACGACCGGGCTTCCGCCGAGCTGGCCCTGGCTGccCCTGCAACGCCTGAAGGTGACCCCGCCGTCGCGTCTG 
CAACGCATGCGCGGCAAGGGCTACGCGAATACCGACTATCGCCAGCAGCCGCGCTGGCTGGAAGCACTGTCC 
GCGTTGCGCGCCGCGCAACTGATTGATTGA