ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6228

TrivialName: PA14_25380

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_25380

PAO1 Ortholog Locus:

Sequence Length: 1602

Protein Length: 533

Start: 2220372

Stop: 2218771

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: dbj|BAC46627.1| (AP005939) bll1362 [Bradyrhizobium japonicum USDA 110] Identities = 79/334 (23%), Positives = 128/334 (38%), Gaps = 45/334 (13%)

Sequence:

GTGGACGATTTCCGAAGCCTGGTCGCCGAAGCAGTGCACGCCGAGGATCTCCAGAGTCTCGCGATGGAACAG
GATCTTCAGCATGCCCACCGGCTCGTTGGAAATCTGCGCCCGGGCCATGCCCTTGAAGAACGCCTTGCCCAC
TTCGTAGGGAATCTTCGCCGCGGTCAGTTCGCTTTCGTTCTTGCCGATCGAGCTGATCTCCGGAATGGTGTA
GATGCCGGTCGGCACATCGTTGACGAAGCGCCAGCTGTCGCTCTCGACGATGTTGCCGGCGGCCGAGCGGCC
CTGGTCGTAGGCAGCGCTGGCCAGGCTCGGCCAGCCGATCACGTCGCCGGCGGCGAAGATGTTGCTCACCGA
AGTGCGGTAGTTCTCGTCCACCTCGATCTGGCCACGGCTGTTGACCTTGATGCCGACGTTCTCCAGGCCGAG
CTTGTCGGTATTGCCGGTCCGGCCGTTGCACCAGAGCAGCGCGTCCGCCTTGATCTTCTTGCCCGACTTCAG
GTGCAGGATGACGCCGTTATCCAGCCCCTCGACGCGCTCGTACTCCTCGTTGTGGCGGATCAGCACGTTGTT
GTTGCGCAGGTGGTAGCTCAGCGCATCGGAAATCTCGTCATCGAGGAAGCTGAGCAACTGGTCGCGCGTATC
GATCAGGTCCACCAGCACGCCCAGGCCGCTGAAGATCGACGCGTATTCGCAGCCGATCACCCCGGCTCCGTA
GATGATCAGCCGGCGCGGGGTGTGGCTCAGGGACAGGATGGTGTCGCTGTCGTAGACCCGCGGGTGGTTGAA
ATTGATGTCCGAAGGACGATACGGGCGCGAGCCGGTGGCGATCACGAACTGGTCGGCGACCAGGCGCTCCAC
CGCGCCGCTCGGCGTCACCACTTCGACGGTGCGTTCGTCGACGAAGCTGGCGGTGCCAGTGAACATGTCGAT
GCGATTGCGCGCGTAGTAGCCGGTACGCGAGGCGACCTGCTTGGAGATCACCCGGTCGGCGCTCTTCAGCAC
GTCGGGGAAGGAGAACCAGCGCGGCTCGCCGATCTGGCGGAACATCGGGTTGGTGTTGAACTCGATGATCTG
CTTCACCGAGTGGCGCAGGGCCTTGGAAGGAATGGTGCCGAGGTGCGTGCAGTTGCCTCCGACCACGCGACG
ACTGTCGACTACCGCCAGCTTGCGTCCGTACTTGGAGGCGTTCATCGCCGCCCCTTCGCCCGCCGGACCCGT
GCCCAAAATCACCACGTCGTAGTTGTAGACAGCCATGCGTACTCCTCAGAACAGGCCGAGGCGCCCACTGGC
GCCTCCGGCAAAGCCGCTGCACAACATGTGCGCGGCGGATCGATTCGATCATCGGGTCGGTGCGAACGACGG
CATTCGCCGGGCAAGGCTCGGTCCGACCTCGAGGCGGGCATATGTTACGCCCCGTGCGAAATGTCGCACATT
AGCGTTTGGTCGCGTCGTAGGCGAGTTTTCCGGGCACTACAGATTCGTCGCGGTTGGCTTCCTCGCATTTCT
GCCGGTCGCCGCCGCAGATCGAGCATTCCTTCTCGATCCCCAGGTTGGCGATGCCGCCGCAGGAACCGGCGA
TCGGCTTGCGGCCCATGA

Translation:

MDDFRSLVAEAVHAEDLQSLAMEQDLQHAHRLVGNLRPGHALEERLAHFVGNLRRGQFAFVLADRADLRNGV
DAGRHIVDEAPAVALDDVAGGRAALVVGSAGQARPADHVAGGEDVAHRSAVVLVHLDLATAVDLDADVLQAE
LVGIAGPAVAPEQRVRLDLLARLQVQDDAVIQPLDALVLLVVADQHVVVAQVVAQRIGNLVIEEAEQLVARI
DQVHQHAQAAEDRRVFAADHPGSVDDQPARGVAQGQDGVAVVDPRVVEIDVRRTIRARAGGDHELVGDQALH
RAARRHHFDGAFVDEAGGASEHVDAIARVVAGTRGDLLGDHPVGALQHVGEGEPARLADLAEHRVGVELDDL
LHRVAQGLGRNGAEVRAVASDHATTVDYRQLASVLGGVHRRPFARRTRAQNHHVVVVDSHAYSSEQAEAPTG
ASGKAAAQHVRGGSIRSSGRCERRHSPGKARSDLEAGICYAPCEMSHISVWSRRRRVFRALQIRRGWLPRIS
AGRRRRSSIPSRSPGWRCRRRNRRSACGP*

AnnotationID:6229 GeneID:6228

AnnotatorUID: diggins

Modification Date/Time: 2004-11-27 19:07:10

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16036

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29574

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36038

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6228_cdd.html

URL:

GC ORFID: `49230`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2733553`	Stop: `2735154`
Length: `1602`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGGACGATTTCCGAAGCCTGGTCGCCGAAGCAGTGCACGCCGAGGATCTCCAGAGTCTCGCGATGGAACAG GATCTTCAGCATGCCCACCGGCTCGTTGGAAATCTGCGCCCGGGCCATGCCCTTGAAGAACGCCTTGCCCAC TTCGTAGGGAATCTTCGCCGCGGTCAGTTCGCTTTCGTTCTTGCCGATCGAGCTGATCTCCGGAATGGTGTA GATGCCGGTCGGCACATCGTTGACGAAGCGCCAGCTGTCGCTCTCGACGATGTTGCCGGCGGCCGAGCGGCC CTGGTCGTAGGCAGCGCTGGCCAGGCTCGGCCAGCCGATCACGTCGCCGGCGGCGAAGATGTTGCTCACCGA AGTGCGGTAGTTCTCGTCCACCTCGATCTGGCCACGGCTGTTGACCTTGATGCCGACGTTCTCCAGGCCGAG CTTGTCGGTATTGCCGGTCCGGCCGTTGCACCAGAGCAGCGCGTCCGCCTTGATCTTCTTGCCCGACTTCAG GTGCAGGATGACGCCGTTATCCAGCCCCTCGACGCGCTCGTACTCCTCGTTGTGGCGGATCAGCACGTTGTT GTTGCGCAGGTGGTAGCTCAGCGCATCGGAAATCTCGTCATCGAGGAAGCTGAGCAACTGGTCGCGCGTATC GATCAGGTCCACCAGCACGCCCAGGCCGCTGAAGATCGACGCGTATTCGCAGCCGATCACCCCGGCTCCGTA GATGATCAGCCGGCGCGGGGTGTGGCTCAGGGACAGGATGGTGTCGCTGTCGTAGACCCGCGGGTGGTTGAA ATTGATGTCCGAAGGACGATACGGGCGCGAGCCGGTGGCGATCACGAACTGGTCGGCGACCAGGCGCTCCAC CGCGCCGCTCGGCGTCACCACTTCGACGGTGCGTTCGTCGACGAAGCTGGCGGTGCCAGTGAACATGTCGAT GCGATTGCGCGCGTAGTAGCCGGTACGCGAGGCGACCTGCTTGGAGATCACCCGGTCGGCGCTCTTCAGCAC GTCGGGGAAGGAGAACCAGCGCGGCTCGCCGATCTGGCGGAACATCGGGTTGGTGTTGAACTCGATGATCTG CTTCACCGAGTGGCGCAGGGCCTTGGAAGGAATGGTGCCGAGGTGCGTGCAGTTGCCTCCGACCACGCGACG ACTGTCGACTACCGCCAGCTTGCGTCCGTACTTGGAGGCGTTCATCGCCGCCCCTTCGCCCGCCGGACCCGT GCCCAAAATCACCACGTCGTAGTTGTAGACAGCCATGCGTACTCCTCAGAACAGGCCGAGGCGCCCACTGGC GCCTCCGGCAAAGCCGCTGCACAACATGTGCGCGGCGGATCGATTCGATCATCGGGTCGGTGCGAACGACGG CATTCGCCGGGCAAGGCTCGGTCCGACCTCGAGGCGGGCATATGTTACGCCCCGTGCGAAATGTCGCACATT AGCGTTTGGTCGCGTCGTAGGCGAGTTTTCCGGGCACTACAGATTCGTCGCGGTTGGCTTCCTCGCATTTCT GCCGGTCGCCGCCGCAGATCGAGCATTCCTTCTCGATCCCCAGGTTGGCGATGCCGCCGCAGGAACCGGCGA TCGGCTTGCGGCCCATGA