ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6226

TrivialName: PA14_25460

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_25460

PAO1 Ortholog Locus:

Sequence Length: 1458

Protein Length: 485

Start: 2224272

Stop: 2225729

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAF12376.1|AE001863_1 (AE001863) adenine deaminase-related protein [Deinococcus radiodurans] Identities = 122/428 (28%), Positives = 148/428 (34%), Gaps = 84/428 (19%)

Sequence:

GTGCATCCGCGACATGTTCAGACCGTTACCGTTCTTCATAGGCCTGCGCTACACCCGCGCCAAACGCCGCAA
CCACTACATCTCGTTCATCTCGCTGACCTCGATGATCGGTCTGGCGCTGGGCGTGCTGGCGATGATCATCGT
GCTCTCGGTGATGAACGGCTTCCAGAAGGAAATGCGCACGCGGATCCTCGGCATGGTGCCGCATGCCACCAT
CAGCGCGACGCAGCCGCTGGACGACTGGCAGACCGTCGCCAACGCGGCGCTGCGGCACCGCGAGGTGGTCGG
CGCGGCGCCGTTCGCCGAACTGCAGGGCATGCTGTCGTACAAGGGCAACATGCTGCCGGTGCTGGTCAACGG
CATCGACCCGCAGGAGGAGCGCAAGGTTTCCATCATCGGCGAGCACATCGTCCAGGGCAGCCTGGACGACCT
CAAGCCTGGCGAGTTCGGCATCGTCCTCGGCGAGATCACCGCGCGGCGCTTCCATGTCAATGTCGGCGACAA
GCTGACCCTGATCGTCCCGGAGGCCACCAGTGCGCCGGGCGGCATCACTCCGCGCATGCAGCGCTTCACCAT
CGTCGCCCTGTTCAAGGTCGGCGCCGAACTGGACAACTCGCTGGCGCTGATCGACATCGCCGATGCTGGCCA
GTTGCTGCGCCTGCAACCGGGCCAGGTGCCGAGCGTGCGCCTGGAACTGAAGGATCTCTACCAGTCGCCGCA
GGTCGCCGCCAAGGTGGTCAAGGAGTTGGGGCAGGGCTTCAGGTCCAGCGACTGGACCAGGACCCAGGGCAG
CCTGTTCAACGCGATGAAGATGGAAAAGACCATGATCGGCCTGCTCCTGCTGCTGATCATCGCGGTCGCCGC
CTTCAACATCATCGCCACCCTGATCATGGTGGTCGCCGACAAGCGCACCGACATCGCGATTCTTCGTACCCT
CGGCGCCACGCCGCGGCAGATCATGGCGATCTTCATGGTCCAGGGCACCGTCATCGGCGTGATCGGGACGGT
CATCGGCGGGGTGCTCGGGGTGTTCGCGGCGTTGAACATCACCGGGATGATCGACCGCATCGAACGGTTGGT
CGGACACAAGGTCTTCAGCTCGGATGTGTACTTCATCAACTACCTGCCTTCCGATCTGCAGGTGCTGGACGT
GGTGCTGATCTGCAGCGCTGCATTGCTGATGAGCTTCCTCGCCACCCTGTACCCATCCTGGCGCGCGGCGCG
GACACAACCGGCCGAGTCGCTGCGCTACGAGTGAGCGAGAAGGCCTGCGCCAGTCCCTGCACGGGGCGGACA
AGGCCCACGAAAAAGCCGCCTTCGAGGCGGCTTTTTCATGTCAGGCGGATCACTTCGCGGCGACCCGTTCGC
GACGTTGCCGGCAGCGTCGGCTCCAACTGCGCTGCACCCACCAGCGCCAGTAGAGCATCGTCAGCGCGTAGC
CGAGGATGGCGGCGATGA

Translation:

MHPRHVQTVTVLHRPALHPRQTPQPLHLVHLADLDDRSGAGRAGDDHRALGDERLPEGNAHADPRHGAACHH
QRDAAAGRLADRRQRGAAAPRGGRRGAVRRTAGHAVVQGQHAAGAGQRHRPAGGAQGFHHRRAHRPGQPGRP
QAWRVRHRPRRDHRAALPCQCRRQADPDRPGGHQCAGRHHSAHAALHHRRPVQGRRRTGQLAGADRHRRCWP
VAAPATGPGAERAPGTEGSLPVAAGRRQGGQGVGAGLQVQRLDQDPGQPVQRDEDGKDHDRPAPAADHRGRR
LQHHRHPDHGGRRQAHRHRDSSYPRRHAAADHGDLHGPGHRHRRDRDGHRRGARGVRGVEHHRDDRPHRTVG
RTQGLQLGCVLHQLPAFRSAGAGRGADLQRCIADELPRHPVPILARGADTTGRVAALRVSEKACASPCTGRT
RPTKKPPSRRLFHVRRITSRRPVRDVAGSVGSNCAAPTSASRASSARSRGWRR*

AnnotationID:6227 GeneID:6226

AnnotatorUID: diggins

Modification Date/Time: 2004-11-29 18:06:33

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16034

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29570

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36070

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6226_cdd.html

URL:

GC ORFID: `49228`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2729653`	Stop: `2728196`
Length: `1458`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGCATCCGCGACATGTTCAGACCGTTACCGTTCTTCATAGGCCTGCGCTACACCCGCGCCAAACGCCGCAA CCACTACATCTCGTTCATCTCGCTGACCTCGATGATCGGTCTGGCGCTGGGCGTGCTGGCGATGATCATCGT GCTCTCGGTGATGAACGGCTTCCAGAAGGAAATGCGCACGCGGATCCTCGGCATGGTGCCGCATGCCACCAT CAGCGCGACGCAGCCGCTGGACGACTGGCAGACCGTCGCCAACGCGGCGCTGCGGCACCGCGAGGTGGTCGG CGCGGCGCCGTTCGCCGAACTGCAGGGCATGCTGTCGTACAAGGGCAACATGCTGCCGGTGCTGGTCAACGG CATCGACCCGCAGGAGGAGCGCAAGGTTTCCATCATCGGCGAGCACATCGTCCAGGGCAGCCTGGACGACCT CAAGCCTGGCGAGTTCGGCATCGTCCTCGGCGAGATCACCGCGCGGCGCTTCCATGTCAATGTCGGCGACAA GCTGACCCTGATCGTCCCGGAGGCCACCAGTGCGCCGGGCGGCATCACTCCGCGCATGCAGCGCTTCACCAT CGTCGCCCTGTTCAAGGTCGGCGCCGAACTGGACAACTCGCTGGCGCTGATCGACATCGCCGATGCTGGCCA GTTGCTGCGCCTGCAACCGGGCCAGGTGCCGAGCGTGCGCCTGGAACTGAAGGATCTCTACCAGTCGCCGCA GGTCGCCGCCAAGGTGGTCAAGGAGTTGGGGCAGGGCTTCAGGTCCAGCGACTGGACCAGGACCCAGGGCAG CCTGTTCAACGCGATGAAGATGGAAAAGACCATGATCGGCCTGCTCCTGCTGCTGATCATCGCGGTCGCCGC CTTCAACATCATCGCCACCCTGATCATGGTGGTCGCCGACAAGCGCACCGACATCGCGATTCTTCGTACCCT CGGCGCCACGCCGCGGCAGATCATGGCGATCTTCATGGTCCAGGGCACCGTCATCGGCGTGATCGGGACGGT CATCGGCGGGGTGCTCGGGGTGTTCGCGGCGTTGAACATCACCGGGATGATCGACCGCATCGAACGGTTGGT CGGACACAAGGTCTTCAGCTCGGATGTGTACTTCATCAACTACCTGCCTTCCGATCTGCAGGTGCTGGACGT GGTGCTGATCTGCAGCGCTGCATTGCTGATGAGCTTCCTCGCCACCCTGTACCCATCCTGGCGCGCGGCGCG GACACAACCGGCCGAGTCGCTGCGCTACGAGTGAGCGAGAAGGCCTGCGCCAGTCCCTGCACGGGGCGGACA AGGCCCACGAAAAAGCCGCCTTCGAGGCGGCTTTTTCATGTCAGGCGGATCACTTCGCGGCGACCCGTTCGC GACGTTGCCGGCAGCGTCGGCTCCAACTGCGCTGCACCCACCAGCGCCAGTAGAGCATCGTCAGCGCGTAGC CGAGGATGGCGGCGATGA