ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6225

TrivialName: PA14_25570

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_25570

PAO1 Ortholog Locus:

Sequence Length: 3402

Protein Length: 1133

Start: 2233280

Stop: 2236681

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: dbj|BAB54265.1| (AP003012) unknown protein [Mesorhizobium loti] Identities = 63/142 (44%), Positives = 68/142 (47%), Gaps = 16/142 (11%)

Sequence:

ATGCGGGCGCGAGGTTTCGCTTTCCTCGGTCTTTTTCGCGTGCTCTGTGTCGGCGGCGTCTTCGCCGGAAGC
TTCAGGCTCGGCCTGTACCGCTTCCTGGGCTTCGTCCGCCTGAGACGGAACGTCGGCCTGGGCGATTTCTTC
AGCCTGGGGTGCAGCAGGTTCCTCCTGGGCCGACGCTTCCTCGCTCGCTACAGCTGGGGTCTCCTCGACGGC
GGGAGCGGCCTGAGCTGCCGCTTCGGCTGCTGCTGCGGCTTCGCGTGCCAGACGCTCGGCTTCGCGTTGCAG
GCGACGTTTTTCCCGTGGGTCGTTGAGGGCACGGCCAGTCGCGTTGGCCGGCACCGCCGCGATGGCCGGGGT
CGGCTCCTCGGTGGCTGCGGGCTCGCTAGGGGCTGCTACCTCGACGGGCGCCGGGGCGGCAACTTCTTCGGC
CGCTTCCGTTGCCGGTTGCACGGCGCTCTCGGCGTCTTCGCGGCTTTCCACGCTTTCGCTGGCGAAGGGAGC
TTCTTCAGTGACTTGCGCGACCAGCAGGGTGCTCTGGTCGGCTTCGTCCCGGACCACGCTGACGGTCACCGG
CGCTTCGATGTCGGCGGTTTCGCCGGCATTGGCCTCGCTGTCCGCGCCCTGGGTTTCCACGGCTTCGCTGGT
CGGCGCGTCGGTTTCATCGCTTGCCGTGGTTTCGCTGGCAGCCTCGCTGGTAGTGGCCGGGGCTTGCTCCAC
GTTTGCTTCTACGGCTTCGCTGGCGACAGCGATACCGGCAGCAGCGGCGGCTGCGACGGTGTTCAGCGGCGC
GGCGGCGTTATCGGTCGCCTCGCTGCCTTCCAGCTCGCCGCTGACCTCGCGCTGGCGTTCGCGGCGGTTGCT
GCGACGACGCTGGCCGCGGGAGCGGCGGCGCGGGCGCTCGCCATCGGTATCGTCCTGCTCGTCCTGCTCCAG
GCTCTCGTCGTTCGGCAGCGCCTCGGCTTCCAGGGCCGCGGCGTCGCGAGCCTGGCGATCCTCGCGCGGCTG
GCGCTCTTCGCGGGCCGGGCGCTCGGCGCGTTCTTCACGGCCTTCGCGGGGTTGGCGCTCTTCGCGAGCCGG
GCGTTCGGCGCGCTCTTCGCGGCGGCGTTCGCTGCGTTCCTCGCGACCTTCGCGGCCTTCGCGCGGCTGGCG
TTCTTCGCGGGGCGTCCGCTCGGCGCGCTCTTCACGGCCTTCGCGCGGCTGGCGCTCCTCGCGAGCCGGGCG
CTCGGCGCGCTCTTCGCGGCGGCGTTCGCTGCGCTCTTCGCGGTTCGGGCGTTCGGCGCGCTCTTCGCGCGG
TTGGCGCTCTGCGCGTTCCTCGCGGGGCTTGCGCTCTTCGTCGCGGCGATTGCCATCGCGGCCATCGCGGCG
GCGGTTCTGCTGGCGGCCGTTGCGACGCTCGTCCTGGCGGGTTTGGCGCTCGGCAGCCGGCTTGCTGGTTTC
AGCAGGCTTGGCGGCAGGTTGATCCTTGCCTGCGAACAGGCCGACCAGGGACTTCACCAGGCCCTGGAACAG
GCTCGGCTCGGGCATCGGCTTGGCCGGCTCGACCGGTGCTTCGGTGTGTTGCGGTGCGGGCTGCTGGGGAGC
GACGGTCTTGACTGCTGCTTCCTGGCGGACCAGGGTGCGGGTCGAGCTGACCGGCTGGGCTTCTTCGTGCTC
GACGGTGGCCATTTCGTAGCTGGTCTGGCCGGCAACCAGTTCGGGGCTGTCATCGCGCAGACGCTGGACTTC
GAAATGCGGGGTTTCCAGATGATCGTCCGGCAGGATGAAGATGCGCGCGCGGGTGCGCAGTTCGATCTTGGT
GATGGCGTTGCGCTTCTCGTTGAGCAGGAAGGCGGCGACCTGGAAGGGCACGCGGGCGCGGACTTCCGCGGT
GCGGTCCTTCAGGGCTTCTTCCTCGATCAGGCGCAGGATGGCCAGCGACAGCGACTCGACGTCGCGGATGAT
GCCCTGGCCGTTGCAGCGCGGGCAGACGATGCCGCTGGTCTCGCCGAGGGACGGACGCAGGCGCTGGCGGGA
CATTTCCAGCAGGCCGAAGCGCGAGATGCGACCGACCTGGACGCGCGCGCGATCGGCCTCGAGGGCTTCGCG
GACACGCTCTTCCACGGCGCGCTGGTTCTTCGCCGGGGTCATGTCGATGAAGTCGATGACGATCAGGCCACC
GATGTCACGCAGGCGCAGCTGGCGGGCGATTTCCTCGGCCGCTTCCAGGTTGGTCTGCAGGGCGGTTTCCTC
GATGTCGCCGCCCTTGGTGGCGCGCGCCGAGTTGATGTCGATGGAAACCAGGGCCTCGGTCGGGTCGATGAC
GATGGAGCCGCCGGACGGCAGCTTCACTTCGCGCTGGAAAGCGGTCTCGATCTGGCTCTCGATCTGGAAGCG
ATTGAACAGCGGAACGCTGTCCTGGTACAGCTTCACCTTGCTGGCGTACTGCGGCATCACCTGGCGGATGAA
GTTCAGGGCTTCTTCCTGGGCGTCGATGCTGTCGATCAGCACTTCGCCGATGTCCTGGCGCAGGTAGTCGCG
GATGGCGCGGATGATGACGTTGCTTTCCTGGTAGATCAGGAAGGGCGCGCCACGTTCGCCGGACGCTTCCTT
GATCGCGCTCCACAGTTGCAGCAGGTAGTCGAGGTCCCACTGCAGTTCCTCGGTGCTGCGGCCGAGGCCGGC
GGTGCGCACGATCAGGCCCATGTCGGCCGGTGCGTTGAGGCCGTTCAGGGCCTCGCGCAGCTCGTTGCGTTC
TTCGCCTTCGATACGACGGGAGATGCCGCCGGCGCGCGGGTTGTTCGGCATCAGCACCAGGTAACGGCCGGC
CAGGCTGATGAAGGTGGTCAGGGCGGCGCCCTTGTTGCCGCGCTCTTCCTTCTCGACCTGGACGATGACTTC
CTGGCCTTCGCTCAGGACTTCCTTGATGTTGATCCGGCCTTCGGGGGATTTCTTGAAGTATTCGCGGGAGAT
TTCTTTGAGGGGGAGGAAGCCGTGGCGTTCGGCGCCGAAGTCGACGAAGGCGGCTTCGAGGCTGGGTTCGAC
GCGAGTGATGCGGCCTTTGTAGATGTTGGCCTTCTTCTGCTCGCGGGCGCCCGACTCGATGTCGAGGTCGAA
CAGGCGTTGGCCGTCGACCAGTGCAACACGCAACTCCTCGGGTTGAGTCGCGTTGATCAGCATTCTTTTCAT
GTAGTACCAATGGTTTCCGGGGCTACCGGAAACGGCGATCGGCACACACGACTCTCACGGTCGGTGCTCGGG
CGCGTATTCAGGAATGGCGGGCCATTCCCGTGTCCAGCGGCGCTCGGCACTGGGTGCCGGTCCGCGACTACG
TCTCCTGCTTCCTGTGTTTCAGAAGCACTTGAGTCAGGAGGAGGAATCGGCTGTCGGAGGCGGACGAAAAAT
GCGTCTGGATCAAGCTAG

Translation:

MRARGFAFLGLFRVLCVGGVFAGSFRLGLYRFLGFVRLRRNVGLGDFFSLGCSRFLLGRRFLARYSWGLLDG
GSGLSCRFGCCCGFACQTLGFALQATFFPWVVEGTASRVGRHRRDGRGRLLGGCGLARGCYLDGRRGGNFFG
RFRCRLHGALGVFAAFHAFAGEGSFFSDLRDQQGALVGFVPDHADGHRRFDVGGFAGIGLAVRALGFHGFAG
RRVGFIACRGFAGSLAGSGRGLLHVCFYGFAGDSDTGSSGGCDGVQRRGGVIGRLAAFQLAADLALAFAAVA
ATTLAAGAAARALAIGIVLLVLLQALVVRQRLGFQGRGVASLAILARLALFAGRALGAFFTAFAGLALFASR
AFGALFAAAFAAFLATFAAFARLAFFAGRPLGALFTAFARLALLASRALGALFAAAFAALFAVRAFGALFAR
LALCAFLAGLALFVAAIAIAAIAAAVLLAAVATLVLAGLALGSRLAGFSRLGGRLILACEQADQGLHQALEQ
ARLGHRLGRLDRCFGVLRCGLLGSDGLDCCFLADQGAGRADRLGFFVLDGGHFVAGLAGNQFGAVIAQTLDF
EMRGFQMIVRQDEDARAGAQFDLGDGVALLVEQEGGDLEGHAGADFRGAVLQGFFLDQAQDGQRQRLDVADD
ALAVAARADDAAGLAEGRTQALAGHFQQAEARDATDLDARAIGLEGFADTLFHGALVLRRGHVDEVDDDQAT
DVTQAQLAGDFLGRFQVGLQGGFLDVAALGGARRVDVDGNQGLGRVDDDGAAGRQLHFALESGLDLALDLEA
IEQRNAVLVQLHLAGVLRHHLADEVQGFFLGVDAVDQHFADVLAQVVADGADDDVAFLVDQEGRATFAGRFL
DRAPQLQQVVEVPLQFLGAAAEAGGAHDQAHVGRCVEAVQGLAQLVAFFAFDTTGDAAGARVVRHQHQVTAG
QADEGGQGGALVAALFLLDLDDDFLAFAQDFLDVDPAFGGFLEVFAGDFFEGEEAVAFGAEVDEGGFEAGFD
ASDAAFVDVGLLLLAGARLDVEVEQALAVDQCNTQLLGLSRVDQHSFHVVPMVSGATGNGDRHTRLSRSVLG
RVFRNGGPFPCPAALGTGCRSATTSPASCVSEALESGGGIGCRRRTKNASGSS*

AnnotationID:6226 GeneID:6225

AnnotatorUID: diggins

Modification Date/Time: 2004-11-27 19:07:09

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:12302

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29567

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36040

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6225_cdd.html

URL:

GC ORFID: `49227`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2720645`	Stop: `2717244`
Length: `3402`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCGGGCGCGAGGTTTCGCTTTCCTCGGTCTTTTTCGCGTGCTCTGTGTCGGCGGCGTCTTCGCCGGAAGC TTCAGGCTCGGCCTGTACCGCTTCCTGGGCTTCGTCCGCCTGAGACGGAACGTCGGCCTGGGCGATTTCTTC AGCCTGGGGTGCAGCAGGTTCCTCCTGGGCCGACGCTTCCTCGCTCGCTACAGCTGGGGTCTCCTCGACGGC GGGAGCGGCCTGAGCTGCCGCTTCGGCTGCTGCTGCGGCTTCGCGTGCCAGACGCTCGGCTTCGCGTTGCAG GCGACGTTTTTCCCGTGGGTCGTTGAGGGCACGGCCAGTCGCGTTGGCCGGCACCGCCGCGATGGCCGGGGT CGGCTCCTCGGTGGCTGCGGGCTCGCTAGGGGCTGCTACCTCGACGGGCGCCGGGGCGGCAACTTCTTCGGC CGCTTCCGTTGCCGGTTGCACGGCGCTCTCGGCGTCTTCGCGGCTTTCCACGCTTTCGCTGGCGAAGGGAGC TTCTTCAGTGACTTGCGCGACCAGCAGGGTGCTCTGGTCGGCTTCGTCCCGGACCACGCTGACGGTCACCGG CGCTTCGATGTCGGCGGTTTCGCCGGCATTGGCCTCGCTGTCCGCGCCCTGGGTTTCCACGGCTTCGCTGGT CGGCGCGTCGGTTTCATCGCTTGCCGTGGTTTCGCTGGCAGCCTCGCTGGTAGTGGCCGGGGCTTGCTCCAC GTTTGCTTCTACGGCTTCGCTGGCGACAGCGATACCGGCAGCAGCGGCGGCTGCGACGGTGTTCAGCGGCGC GGCGGCGTTATCGGTCGCCTCGCTGCCTTCCAGCTCGCCGCTGACCTCGCGCTGGCGTTCGCGGCGGTTGCT GCGACGACGCTGGCCGCGGGAGCGGCGGCGCGGGCGCTCGCCATCGGTATCGTCCTGCTCGTCCTGCTCCAG GCTCTCGTCGTTCGGCAGCGCCTCGGCTTCCAGGGCCGCGGCGTCGCGAGCCTGGCGATCCTCGCGCGGCTG GCGCTCTTCGCGGGCCGGGCGCTCGGCGCGTTCTTCACGGCCTTCGCGGGGTTGGCGCTCTTCGCGAGCCGG GCGTTCGGCGCGCTCTTCGCGGCGGCGTTCGCTGCGTTCCTCGCGACCTTCGCGGCCTTCGCGCGGCTGGCG TTCTTCGCGGGGCGTCCGCTCGGCGCGCTCTTCACGGCCTTCGCGCGGCTGGCGCTCCTCGCGAGCCGGGCG CTCGGCGCGCTCTTCGCGGCGGCGTTCGCTGCGCTCTTCGCGGTTCGGGCGTTCGGCGCGCTCTTCGCGCGG TTGGCGCTCTGCGCGTTCCTCGCGGGGCTTGCGCTCTTCGTCGCGGCGATTGCCATCGCGGCCATCGCGGCG GCGGTTCTGCTGGCGGCCGTTGCGACGCTCGTCCTGGCGGGTTTGGCGCTCGGCAGCCGGCTTGCTGGTTTC AGCAGGCTTGGCGGCAGGTTGATCCTTGCCTGCGAACAGGCCGACCAGGGACTTCACCAGGCCCTGGAACAG GCTCGGCTCGGGCATCGGCTTGGCCGGCTCGACCGGTGCTTCGGTGTGTTGCGGTGCGGGCTGCTGGGGAGC GACGGTCTTGACTGCTGCTTCCTGGCGGACCAGGGTGCGGGTCGAGCTGACCGGCTGGGCTTCTTCGTGCTC GACGGTGGCCATTTCGTAGCTGGTCTGGCCGGCAACCAGTTCGGGGCTGTCATCGCGCAGACGCTGGACTTC GAAATGCGGGGTTTCCAGATGATCGTCCGGCAGGATGAAGATGCGCGCGCGGGTGCGCAGTTCGATCTTGGT GATGGCGTTGCGCTTCTCGTTGAGCAGGAAGGCGGCGACCTGGAAGGGCACGCGGGCGCGGACTTCCGCGGT GCGGTCCTTCAGGGCTTCTTCCTCGATCAGGCGCAGGATGGCCAGCGACAGCGACTCGACGTCGCGGATGAT GCCCTGGCCGTTGCAGCGCGGGCAGACGATGCCGCTGGTCTCGCCGAGGGACGGACGCAGGCGCTGGCGGGA CATTTCCAGCAGGCCGAAGCGCGAGATGCGACCGACCTGGACGCGCGCGCGATCGGCCTCGAGGGCTTCGCG GACACGCTCTTCCACGGCGCGCTGGTTCTTCGCCGGGGTCATGTCGATGAAGTCGATGACGATCAGGCCACC GATGTCACGCAGGCGCAGCTGGCGGGCGATTTCCTCGGCCGCTTCCAGGTTGGTCTGCAGGGCGGTTTCCTC GATGTCGCCGCCCTTGGTGGCGCGCGCCGAGTTGATGTCGATGGAAACCAGGGCCTCGGTCGGGTCGATGAC GATGGAGCCGCCGGACGGCAGCTTCACTTCGCGCTGGAAAGCGGTCTCGATCTGGCTCTCGATCTGGAAGCG ATTGAACAGCGGAACGCTGTCCTGGTACAGCTTCACCTTGCTGGCGTACTGCGGCATCACCTGGCGGATGAA GTTCAGGGCTTCTTCCTGGGCGTCGATGCTGTCGATCAGCACTTCGCCGATGTCCTGGCGCAGGTAGTCGCG GATGGCGCGGATGATGACGTTGCTTTCCTGGTAGATCAGGAAGGGCGCGCCACGTTCGCCGGACGCTTCCTT GATCGCGCTCCACAGTTGCAGCAGGTAGTCGAGGTCCCACTGCAGTTCCTCGGTGCTGCGGCCGAGGCCGGC GGTGCGCACGATCAGGCCCATGTCGGCCGGTGCGTTGAGGCCGTTCAGGGCCTCGCGCAGCTCGTTGCGTTC TTCGCCTTCGATACGACGGGAGATGCCGCCGGCGCGCGGGTTGTTCGGCATCAGCACCAGGTAACGGCCGGC CAGGCTGATGAAGGTGGTCAGGGCGGCGCCCTTGTTGCCGCGCTCTTCCTTCTCGACCTGGACGATGACTTC CTGGCCTTCGCTCAGGACTTCCTTGATGTTGATCCGGCCTTCGGGGGATTTCTTGAAGTATTCGCGGGAGAT TTCTTTGAGGGGGAGGAAGCCGTGGCGTTCGGCGCCGAAGTCGACGAAGGCGGCTTCGAGGCTGGGTTCGAC GCGAGTGATGCGGCCTTTGTAGATGTTGGCCTTCTTCTGCTCGCGGGCGCCCGACTCGATGTCGAGGTCGAA CAGGCGTTGGCCGTCGACCAGTGCAACACGCAACTCCTCGGGTTGAGTCGCGTTGATCAGCATTCTTTTCAT GTAGTACCAATGGTTTCCGGGGCTACCGGAAACGGCGATCGGCACACACGACTCTCACGGTCGGTGCTCGGG CGCGTATTCAGGAATGGCGGGCCATTCCCGTGTCCAGCGGCGCTCGGCACTGGGTGCCGGTCCGCGACTACG TCTCCTGCTTCCTGTGTTTCAGAAGCACTTGAGTCAGGAGGAGGAATCGGCTGTCGGAGGCGGACGAAAAAT GCGTCTGGATCAAGCTAG