ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6224

TrivialName: PA14_25680

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_25680

PAO1 Ortholog Locus:

Sequence Length: 1203

Protein Length: 400

Start: 2245674

Stop: 2244472

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK22724.1| (AE005749) hypothetical protein [Caulobacter crescentus CB15] Identities = 99/374 (26%), Positives = 128/374 (34%), Gaps = 61/374 (16%)

Sequence:

GTGGGCCACCAGGTCGAGGTCGCAACCTTCGTCCGGGTTGTCCAGGTTGATGGTCGGCGGGGCGACCTGGTC
GCGCAGGGCCAGCACGCTGAAGATCGCCTCCACCGCACCGGCGGCACCCAACAGGTGGCCGGTCATCGACTT
GGTCGAACTCATCGACAGCGCATGGGCATGCTCGCCGAACACGCTCTTCACCGCGGCGATCTCGGCGATGTC
GCCGGCCGGGGTGGAGGTGCCATGGGCGTTGATGTAATCGACCTGACGAGGATCCAGGCCGGCATCGCGCAG
CGCGTTCTTCATGCAGCGGGCGGCACCGGCGCCATCTTCCGGCGGCGCGGTCATGTGGAAGGCGTCGCCGCT
CATGCCGAAGCCAACCAGCTCGGCATAGATCCGCGCGCCGCGGGCACGGGCGTGCTCCAGTTCTTCGAGCAC
CAGGGCGCCGGAACCGTCGGACAGGACGAAGCCGTCGCGATCCCGGTCCCACGGACGGCTGGCACGGGTCGG
CTCGTCGTTGCGAGTGGAGAGCGCGCGAGCCGCGCCGAAACCGCCCAGGCCGAGACCGCAGGCAGCCATTTC
GGAACCGCCGGCGACCATCACGTCGGCCTCGCCATAGGCGATGTTGCGAGCAGCCATGCCGATGCTGTGGGT
ACCGGTGGTGCAGGCGGTGGTGAGGGCGTAGTTGGGCCCCTGCAGACCCAGGTGGATCGACAGGAAGCCGGA
AACCATGTTGATGATCGAACCGGGCACGAAGAACGGCGAGATGCGCCGCGGCCCCTGCTCGAACAGGGATCG
GCAGTTGTTCTCGATATTGGTCAGGCCGCCGATACCGGAACCCATGGATACGCCGATACGCTCACGATTGGC
GTCGGTGACCTCCAGGCCGGAATCGCGAACGGCCTGGAAGCTGGCGGCGAGACCGTACTGGATGAACAGGTC
GAGCTTGCGGGCTTCCTTGGCGGACAGGTATTCCTCGACATTGAAACCCTTGACCGAACCACCGAAGCGGGT
GGAATAGGCGGACAGGTCCATATGCTCGATCGGGGCGATCCCGCTGCGACCGGCGAGAATACCTTCCCAACT
GCTCGGGACATCCAGGCCCAGCGGCGACAGCATGCCCATGCCAGTAATGACGACGCGTCTACGCGACACTAC
GACTTCCTCTTTCTCATTTCACGGGGTTGCGCCGACAGACTACCAGAGTAG

Translation:

MGHQVEVATFVRVVQVDGRRGDLVAQGQHAEDRLHRTGGTQQVAGHRLGRTHRQRMGMLAEHALHRGDLGDV
AGRGGGAMGVDVIDLTRIQAGIAQRVLHAAGGTGAIFRRRGHVEGVAAHAEANQLGIDPRAAGTGVLQFFEH
QGAGTVGQDEAVAIPVPRTAGTGRLVVASGERASRAETAQAETAGSHFGTAGDHHVGLAIGDVASSHADAVG
TGGAGGGEGVVGPLQTQVDRQEAGNHVDDRTGHEERRDAPRPLLEQGSAVVLDIGQAADTGTHGYADTLTIG
VGDLQAGIANGLEAGGETVLDEQVELAGFLGGQVFLDIETLDRTTEAGGIGGQVHMLDRGDPAATGENTFPT
ARDIQAQRRQHAHASNDDASTRHYDFLFLISRGCADRLPE*

AnnotationID:6225 GeneID:6224

AnnotatorUID: diggins

Modification Date/Time: 2004-11-28 10:10:55

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16032

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29565

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36052

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6224_cdd.html

URL:

GC ORFID: `49226`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2708251`	Stop: `2709453`
Length: `1203`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGGGCCACCAGGTCGAGGTCGCAACCTTCGTCCGGGTTGTCCAGGTTGATGGTCGGCGGGGCGACCTGGTC GCGCAGGGCCAGCACGCTGAAGATCGCCTCCACCGCACCGGCGGCACCCAACAGGTGGCCGGTCATCGACTT GGTCGAACTCATCGACAGCGCATGGGCATGCTCGCCGAACACGCTCTTCACCGCGGCGATCTCGGCGATGTC GCCGGCCGGGGTGGAGGTGCCATGGGCGTTGATGTAATCGACCTGACGAGGATCCAGGCCGGCATCGCGCAG CGCGTTCTTCATGCAGCGGGCGGCACCGGCGCCATCTTCCGGCGGCGCGGTCATGTGGAAGGCGTCGCCGCT CATGCCGAAGCCAACCAGCTCGGCATAGATCCGCGCGCCGCGGGCACGGGCGTGCTCCAGTTCTTCGAGCAC CAGGGCGCCGGAACCGTCGGACAGGACGAAGCCGTCGCGATCCCGGTCCCACGGACGGCTGGCACGGGTCGG CTCGTCGTTGCGAGTGGAGAGCGCGCGAGCCGCGCCGAAACCGCCCAGGCCGAGACCGCAGGCAGCCATTTC GGAACCGCCGGCGACCATCACGTCGGCCTCGCCATAGGCGATGTTGCGAGCAGCCATGCCGATGCTGTGGGT ACCGGTGGTGCAGGCGGTGGTGAGGGCGTAGTTGGGCCCCTGCAGACCCAGGTGGATCGACAGGAAGCCGGA AACCATGTTGATGATCGAACCGGGCACGAAGAACGGCGAGATGCGCCGCGGCCCCTGCTCGAACAGGGATCG GCAGTTGTTCTCGATATTGGTCAGGCCGCCGATACCGGAACCCATGGATACGCCGATACGCTCACGATTGGC GTCGGTGACCTCCAGGCCGGAATCGCGAACGGCCTGGAAGCTGGCGGCGAGACCGTACTGGATGAACAGGTC GAGCTTGCGGGCTTCCTTGGCGGACAGGTATTCCTCGACATTGAAACCCTTGACCGAACCACCGAAGCGGGT GGAATAGGCGGACAGGTCCATATGCTCGATCGGGGCGATCCCGCTGCGACCGGCGAGAATACCTTCCCAACT GCTCGGGACATCCAGGCCCAGCGGCGACAGCATGCCCATGCCAGTAATGACGACGCGTCTACGCGACACTAC GACTTCCTCTTTCTCATTTCACGGGGTTGCGCCGACAGACTACCAGAGTAG