ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6219

TrivialName: PA14_25870

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_25870

PAO1 Ortholog Locus:

Sequence Length: 945

Protein Length: 314

Start: 2258581

Stop: 2257637

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAD94807.1| (BX248343) PE-PGRS FAMILY PROTEIN [Mycobacterium bovis subsp. bovis AF2122/97] Identities = 82/273 (30%), Positives = 101/273 (36%), Gaps = 44/273 (16%)

Sequence:

TTGGAATCGGGCTCAGACGGCCTTTTCCAGCTCCGGTACGGCGTCGAACAGGTCGGCGACCAGGCCGTAGTC
GGCGACCTGGAAGATCGGCGCCTCTTCGTCCTTGTTGATCGCGACGATCACCTTCGAGTCCTTCATGCCCGC
CAGGTGCTGGATGGCGCCGGAGATGCCCACCGCGATGTACAGCTGCGGGGCGACGATCTTGCCGGTCTGGCC
GACCTGCATGTCGTTCGGCACGAAACCGGCGTCGACCGCGGCGCGGGAAGCGCCGACTGCGGCACCCAGCTT
GTCGGCCAGGGCGTAGAGGATCTTGAAGTTGTCGCCGTTCTGCATGCCGCGGCCGCCGGAGACCACGATCTT
GGCAGCGGTCAGTTCCGGACGGTCGGACTTGGCCAGCTCTTCGCCGACGAAGGCGGACTTGCCGGCATCGGC
CGGGCCGGAAACCTGCTCGACGGCAGCCGAACCGCCTTCGGCGGCGACGGCGTCGAAGCCGGTGGTACGCAC
GGTGATCACCTTGACCGCAGCCGAGGACTGCACGGTAGCGATGGCGTTACCGGCGTAGATCGGACGCTTGAA
GGTGTCGGGGCTGACCACTTCGACGATCTCGGAGATCTGGTCGACGTCCAGCAGCGCGGCGACGCGCGGCAG
GAAGTTCTTGCCGTTGGTGGTAGCCGGGGCCAGCACGTGGCTGTAGTTCTTGCCCAGCTCGGCGATCAGCGG
TGCGACGTTTTCCGGCAGTTGATGGGCGTAGGCGGCGTTGTCGGCGACCAGCACCTTGGAGACGCCCTCGAC
CTTGGCGGCGGCTTCGGCCACGGCGGCAACGTTCTGTCCGGCGACCAGCACGTGGATGTCGCCGCCAATGGC
CTTGGCAGCGGCAACAGTGTTCAGGGTGGCAGCCGCCAGGGCCGCGTTGTTGTGCTCAGCGATAACCAGGAT
AGCCATTAG

Translation:

MESGSDGLFQLRYGVEQVGDQAVVGDLEDRRLFVLVDRDDHLRVLHARQVLDGAGDAHRDVQLRGDDLAGLA
DLHVVRHETGVDRGAGSADCGTQLVGQGVEDLEVVAVLHAAAAGDHDLGSGQFRTVGLGQLFADEGGLAGIG
RAGNLLDGSRTAFGGDGVEAGGTHGDHLDRSRGLHGSDGVTGVDRTLEGVGADHFDDLGDLVDVQQRGDARQ
EVLAVGGSRGQHVAVVLAQLGDQRCDVFRQLMGVGGVVGDQHLGDALDLGGGFGHGGNVLSGDQHVDVAANG
LGSGNSVQGGSRQGRVVVLSDNQDSH*

AnnotationID:6220 GeneID:6219

AnnotatorUID: diggins

Modification Date/Time: 2004-11-28 11:11:23

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16024

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29556

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36053

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6219_cdd.html

URL:

GC ORFID: `49221`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2695344`	Stop: `2696288`
Length: `945`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGGAATCGGGCTCAGACGGCCTTTTCCAGCTCCGGTACGGCGTCGAACAGGTCGGCGACCAGGCCGTAGTC GGCGACCTGGAAGATCGGCGCCTCTTCGTCCTTGTTGATCGCGACGATCACCTTCGAGTCCTTCATGCCCGC CAGGTGCTGGATGGCGCCGGAGATGCCCACCGCGATGTACAGCTGCGGGGCGACGATCTTGCCGGTCTGGCC GACCTGCATGTCGTTCGGCACGAAACCGGCGTCGACCGCGGCGCGGGAAGCGCCGACTGCGGCACCCAGCTT GTCGGCCAGGGCGTAGAGGATCTTGAAGTTGTCGCCGTTCTGCATGCCGCGGCCGCCGGAGACCACGATCTT GGCAGCGGTCAGTTCCGGACGGTCGGACTTGGCCAGCTCTTCGCCGACGAAGGCGGACTTGCCGGCATCGGC CGGGCCGGAAACCTGCTCGACGGCAGCCGAACCGCCTTCGGCGGCGACGGCGTCGAAGCCGGTGGTACGCAC GGTGATCACCTTGACCGCAGCCGAGGACTGCACGGTAGCGATGGCGTTACCGGCGTAGATCGGACGCTTGAA GGTGTCGGGGCTGACCACTTCGACGATCTCGGAGATCTGGTCGACGTCCAGCAGCGCGGCGACGCGCGGCAG GAAGTTCTTGCCGTTGGTGGTAGCCGGGGCCAGCACGTGGCTGTAGTTCTTGCCCAGCTCGGCGATCAGCGG TGCGACGTTTTCCGGCAGTTGATGGGCGTAGGCGGCGTTGTCGGCGACCAGCACCTTGGAGACGCCCTCGAC CTTGGCGGCGGCTTCGGCCACGGCGGCAACGTTCTGTCCGGCGACCAGCACGTGGATGTCGCCGCCAATGGC CTTGGCAGCGGCAACAGTGTTCAGGGTGGCAGCCGCCAGGGCCGCGTTGTTGTGCTCAGCGATAACCAGGAT AGCCATTAG