ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6218

TrivialName: PA14_25890

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_25890

PAO1 Ortholog Locus:

Sequence Length: 1452

Protein Length: 483

Start: 2258681

Stop: 2260132

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 135/499 (27%), Positives = 166/499 (33%), Gaps = 93/499 (18%)

Sequence:

GTGTCTCATTTACAATGCGCGACGTCTCTAGCTCCTGAATGTGCTTTTCCGGCATCTAGCAACCGAGGTTTT
CATGATCATCAAACCGCGCGTGCGTGGCTTCATCTGCGTCACTACCCATCCGGCAGGCTGCGAGGCCAACGT
CAAGCAACAGATCGACTACGTCGAGGCCAAGGGCCCCGTCGTCAACGGACCGAAGAAGGTCCTGGTCATCGG
TTCCTCCACCGGCTATGGCCTGGCTGCCCGCATCACCGCCGCGTTCGGTTCCGGCGCCGATACCCTCGGGGT
GTTCTTCGAGCGTCCGGGCAGCGAGAGCAAGCCGGGCACCGCCGGCTGGTACAACTCGGCGGCCTTCGAGAA
GTTCGCCCACGAGAAAGGCCTGTATGCCCGCAGCATCAATGGCGACGCTTTCTCCGACGAGGTGAAGCGGCT
GACCATCGAGACCATCAAGCGCGATCTCGGCAAGGTCGACCTGGTGGTCTACAGCCTGGCCGCGCCGCGCCG
TACCCATCCGAAGAGCGGCGAAGTGTTCTCCTCGACCCTCAAGCCGATCGGCAAGTCGGTCAGCTTCCGTGG
CCTGGACACCGACAAGGAAGTGATCAAGGACGTCGTCCTGGAGGCGGCCAGCGATCAGGAGGTCGCCGATAC
CGTTGCGGTGATGGGCGGCGAGGACTGGCAGATGTGGATCGATGCGCTGCTGGAGGCCGACGTGCTGGCCGA
CGGCGCGAAGACCACCGCGTTCACCTACCTGGGCGAGAAGATCACCCACGACATCTACTGGAACGGTTCCAT
CGGCGCGGCCAAGAAGGATCTCGACCAGAAGGTCCTCGGTATCCGCGACAAGCTCGCCCCTCTGGGCGGCGA
TGCGCGCGTGTCGGTGCTCAAGGCGGTGGTGACCCAGGCCAGCTCGGCGATCCCGATGATGCCGCTGTACCT
GTCGCTGCTGTTCAAGGTGATGAAGGAGCAGGGCACCCACGAAGGTTGCATCGAGCAGGTCGACGGCCTGTA
CCGGGAGAGCCTGTACGGCGCCGAGCCGCGCCTCGACGAGGAAGGCCGCCTGCGTGCCGACTACAAGGAACT
GCAGCCGGAAGTGCAGTCCCGTGTCGAGGAGCTGTGGGACAAGGTAACCAACGAGAACCTTTACGAGTTGAC
CGACTTCGCTGGCTACAAGAGCGAGTTCCTCAACCTGTTCGGTTTCGAGGTCGCTGGGGTCGACTACGAGCA
GGACGTCAACCCGGACGTGCAGATCGCCAACCTGATCCAGGCCTGAGGCCTGGATCCGAGCCGTCCTCGCGA
CGGTTCCCGCTCCCCCGAACCGGCGCCCAGGCGCCGGTTCGCGTTTTCAGCGACCGGCCACCTGGGCGTTCC
GTACGCCGTCGAGGAAGGCCTGGTAGTGCTGCGCGGTTTCCTCCGGGCGTTCGACCATCGGCACATGTCCGC
AGTTTTCCATGA

Translation:

MSHLQCATSLAPECAFPASSNRGFHDHQTARAWLHLRHYPSGRLRGQRQATDRLRRGQGPRRQRTEEGPGHR
FLHRLWPGCPHHRRVRFRRRYPRGVLRASGQREQAGHRRLVQLGGLREVRPRERPVCPQHQWRRFLRRGEAA
DHRDHQARSRQGRPGGLQPGRAAPYPSEERRSVLLDPQADRQVGQLPWPGHRQGSDQGRRPGGGQRSGGRRY
RCGDGRRGLADVDRCAAGGRRAGRRREDHRVHLPGREDHPRHLLERFHRRGQEGSRPEGPRYPRQARPSGRR
CARVGAQGGGDPGQLGDPDDAAVPVAAVQGDEGAGHPRRLHRAGRRPVPGEPVRRRAAPRRGRPPACRLQGT
AAGSAVPCRGAVGQGNQREPLRVDRLRWLQERVPQPVRFRGRWGRLRAGRQPGRADRQPDPGLRPGSEPSSR
RFPLPRTGAQAPVRVFSDRPPGRSVRRRGRPGSAARFPPGVRPSAHVRSFP*

AnnotationID:6219 GeneID:6218

AnnotatorUID: diggins

Modification Date/Time: 2004-11-28 11:11:44

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16022

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29554

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36054

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6218_cdd.html

URL:

GC ORFID: `49220`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2695244`	Stop: `2693793`
Length: `1452`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGTCTCATTTACAATGCGCGACGTCTCTAGCTCCTGAATGTGCTTTTCCGGCATCTAGCAACCGAGGTTTT CATGATCATCAAACCGCGCGTGCGTGGCTTCATCTGCGTCACTACCCATCCGGCAGGCTGCGAGGCCAACGT CAAGCAACAGATCGACTACGTCGAGGCCAAGGGCCCCGTCGTCAACGGACCGAAGAAGGTCCTGGTCATCGG TTCCTCCACCGGCTATGGCCTGGCTGCCCGCATCACCGCCGCGTTCGGTTCCGGCGCCGATACCCTCGGGGT GTTCTTCGAGCGTCCGGGCAGCGAGAGCAAGCCGGGCACCGCCGGCTGGTACAACTCGGCGGCCTTCGAGAA GTTCGCCCACGAGAAAGGCCTGTATGCCCGCAGCATCAATGGCGACGCTTTCTCCGACGAGGTGAAGCGGCT GACCATCGAGACCATCAAGCGCGATCTCGGCAAGGTCGACCTGGTGGTCTACAGCCTGGCCGCGCCGCGCCG TACCCATCCGAAGAGCGGCGAAGTGTTCTCCTCGACCCTCAAGCCGATCGGCAAGTCGGTCAGCTTCCGTGG CCTGGACACCGACAAGGAAGTGATCAAGGACGTCGTCCTGGAGGCGGCCAGCGATCAGGAGGTCGCCGATAC CGTTGCGGTGATGGGCGGCGAGGACTGGCAGATGTGGATCGATGCGCTGCTGGAGGCCGACGTGCTGGCCGA CGGCGCGAAGACCACCGCGTTCACCTACCTGGGCGAGAAGATCACCCACGACATCTACTGGAACGGTTCCAT CGGCGCGGCCAAGAAGGATCTCGACCAGAAGGTCCTCGGTATCCGCGACAAGCTCGCCCCTCTGGGCGGCGA TGCGCGCGTGTCGGTGCTCAAGGCGGTGGTGACCCAGGCCAGCTCGGCGATCCCGATGATGCCGCTGTACCT GTCGCTGCTGTTCAAGGTGATGAAGGAGCAGGGCACCCACGAAGGTTGCATCGAGCAGGTCGACGGCCTGTA CCGGGAGAGCCTGTACGGCGCCGAGCCGCGCCTCGACGAGGAAGGCCGCCTGCGTGCCGACTACAAGGAACT GCAGCCGGAAGTGCAGTCCCGTGTCGAGGAGCTGTGGGACAAGGTAACCAACGAGAACCTTTACGAGTTGAC CGACTTCGCTGGCTACAAGAGCGAGTTCCTCAACCTGTTCGGTTTCGAGGTCGCTGGGGTCGACTACGAGCA GGACGTCAACCCGGACGTGCAGATCGCCAACCTGATCCAGGCCTGAGGCCTGGATCCGAGCCGTCCTCGCGA CGGTTCCCGCTCCCCCGAACCGGCGCCCAGGCGCCGGTTCGCGTTTTCAGCGACCGGCCACCTGGGCGTTCC GTACGCCGTCGAGGAAGGCCTGGTAGTGCTGCGCGGTTTCCTCCGGGCGTTCGACCATCGGCACATGTCCGC AGTTTTCCATGA