ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6215

TrivialName: PA14_26040

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_26040

PAO1 Ortholog Locus:

Sequence Length: 1578

Protein Length: 525

Start: 2276985

Stop: 2275408

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK23765.1| (AE005853) hypothetical protein [Caulobacter crescentus CB15] Identities = 108/423 (25%), Positives = 146/423 (34%), Gaps = 71/423 (16%)

Sequence:

ATGGCTGTCGTCGCCGGCCAGCGGCACTTCGTTGCCCTGGGCGTCGTACAGCTTGCCGTCGAGGAAATAGTC
GCCTTCGTGCAGGGCGGCGATGTCCTGGTAGCGCAGGGTCCGCTCGCTGGCGGCGACGAACACCGACTGCTG
GTCGGAGTTGCCGGCAGTGAAGTGGTTGAACGCCAGGTTGAGCAGGATCGCCATGATCGCCGAGGAACTGAT
GCCGGAATGGAAGATGGTGGCGAACCAACTGGGGAAGTGATCGTAGAACGTCGGCGCGGCGATCGGGATCAT
GCCGAAGCCGATCGAAGTGGCGACGATGATCAGGTTCATGTTGTTGCGGTAGTCCACCTTCGACAGGGTGCG
GATGCCGCTGGCGGCGACCGTGCCGAACAACACGATGCCGGCGCCGCCGAGCACGGCGGTGGGCACCGCGGC
GATCACCCGGCCCATCACCGGCAGCAGGCCGAGGATCACCAGGAACAACCCGCCGGTGGCGACCACGTAGCG
GCTCTTGATCCCGGTCACCGCCACCAGGCCGACGTTCTGGGCGAAGGCGCTCTGGGTGAAGGAGCCGAAGAT
CGGCGCCAGCATGCTGGAGAACATGTCCGCGCGCAGGCCGTTGCCCAGGCGCCGCGAGTCGACCTTGGTGTC
GATGATCTCGCCTACCGCGAGGATGTCCGCCGAGGTTTCCACCAGGGTCACCATGATCACGATGCACATCGA
GATGATCGCGGCGACCTGGAAGGTCGGCATGCCGAAGTGGAACGGCGTGGGAAACGCCACCAGCGGGCCTTC
GGTGACCTTGGAGAAGTCGGCCATGCCGAGGAACACCGCGATGACGGTGCCGATGACCATCGCCAGGAGGAT
CGACAGGCGCGAGATCGAGGCGCTGCCGAGCTTGCTCAGCAGCAGCACGATGACCAGGGTGATCGCCGCCAG
GCCGATGTTGGCCATGCTGCCGAAGTCCGGCGCGTGGCTGTTGCCGCCCATCGCCCAGCGCGCGGCGACCGG
CATCAGGGTCAGGCCGATGGTGGTGATGACGATGCCGGTCACCAGCGGCGGGAAGAATTTGGTGATGCGCGA
AAAGATCGGCGTGATCAGCAACCCGATCAGCGAGGCCGCCATCACCGCGCCGAGCACTGCGGGAATGCCGCC
GCTGCCACCGCTGCCGATGATCGCCACCATGGTCGCCACGCCAGCGAAGGACACCCCCTGGACCAGCGGCAA
CTGACAGCCGAAGAACGGCACGCCGAGGGTTTGCAGCAGGGTCGCCAGGCCGCCGGCGAACAGCGAAGCGGC
GATCAGCAGGCCGATGTCGCCGGGCGCGAGGCCAGCGGCCTGGCCGAGGATCAGGGGGACCGCGACGATACC
GCCATACATGGTCAGCACATGTTGCAGGCCGTAGGCCATGTTGGCGCCGACACCGAGGTTCTCGTCTTCAGG
CCGTGGAACGGATGGAGTTCCGGAGGACGTCGTTTTCATGGTGCGCTGTTCTCGCTTTTATTGTTGTGCGCA
CACTGTAGACAATTCGATCCGAAAATATCCAGAAGAATGTATACAAAAATTCCAACAAATCTGTGA

Translation:

MAVVAGQRHFVALGVVQLAVEEIVAFVQGGDVLVAQGPLAGGDEHRLLVGVAGSEVVERQVEQDRHDRRGTD
AGMEDGGEPTGEVIVERRRGDRDHAEADRSGDDDQVHVVAVVHLRQGADAAGGDRAEQHDAGAAEHGGGHRG
DHPAHHRQQAEDHQEQPAGGDHVAALDPGHRHQADVLGEGALGEGAEDRRQHAGEHVRAQAVAQAPRVDLGV
DDLAYREDVRRGFHQGHHDHDAHRDDRGDLEGRHAEVERRGKRHQRAFGDLGEVGHAEEHRDDGADDHRQED
RQARDRGAAELAQQQHDDQGDRRQADVGHAAEVRRVAVAAHRPARGDRHQGQADGGDDDAGHQRREEFGDAR
KDRRDQQPDQRGRHHRAEHCGNAAAATAADDRHHGRHASEGHPLDQRQLTAEERHAEGLQQGRQAAGEQRSG
DQQADVAGREASGLAEDQGDRDDTAIHGQHMLQAVGHVGADTEVLVFRPWNGWSSGGRRFHGALFSLLLLCA
HCRQFDPKISRRMYTKIPTNL*

AnnotationID:6216 GeneID:6215

AnnotatorUID: diggins

Modification Date/Time: 2004-11-30 09:09:38

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:12283

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29548

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36094

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6215_cdd.html

URL:

GC ORFID: `49217`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2676940`	Stop: `2678517`
Length: `1578`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGCTGTCGTCGCCGGCCAGCGGCACTTCGTTGCCCTGGGCGTCGTACAGCTTGCCGTCGAGGAAATAGTC GCCTTCGTGCAGGGCGGCGATGTCCTGGTAGCGCAGGGTCCGCTCGCTGGCGGCGACGAACACCGACTGCTG GTCGGAGTTGCCGGCAGTGAAGTGGTTGAACGCCAGGTTGAGCAGGATCGCCATGATCGCCGAGGAACTGAT GCCGGAATGGAAGATGGTGGCGAACCAACTGGGGAAGTGATCGTAGAACGTCGGCGCGGCGATCGGGATCAT GCCGAAGCCGATCGAAGTGGCGACGATGATCAGGTTCATGTTGTTGCGGTAGTCCACCTTCGACAGGGTGCG GATGCCGCTGGCGGCGACCGTGCCGAACAACACGATGCCGGCGCCGCCGAGCACGGCGGTGGGCACCGCGGC GATCACCCGGCCCATCACCGGCAGCAGGCCGAGGATCACCAGGAACAACCCGCCGGTGGCGACCACGTAGCG GCTCTTGATCCCGGTCACCGCCACCAGGCCGACGTTCTGGGCGAAGGCGCTCTGGGTGAAGGAGCCGAAGAT CGGCGCCAGCATGCTGGAGAACATGTCCGCGCGCAGGCCGTTGCCCAGGCGCCGCGAGTCGACCTTGGTGTC GATGATCTCGCCTACCGCGAGGATGTCCGCCGAGGTTTCCACCAGGGTCACCATGATCACGATGCACATCGA GATGATCGCGGCGACCTGGAAGGTCGGCATGCCGAAGTGGAACGGCGTGGGAAACGCCACCAGCGGGCCTTC GGTGACCTTGGAGAAGTCGGCCATGCCGAGGAACACCGCGATGACGGTGCCGATGACCATCGCCAGGAGGAT CGACAGGCGCGAGATCGAGGCGCTGCCGAGCTTGCTCAGCAGCAGCACGATGACCAGGGTGATCGCCGCCAG GCCGATGTTGGCCATGCTGCCGAAGTCCGGCGCGTGGCTGTTGCCGCCCATCGCCCAGCGCGCGGCGACCGG CATCAGGGTCAGGCCGATGGTGGTGATGACGATGCCGGTCACCAGCGGCGGGAAGAATTTGGTGATGCGCGA AAAGATCGGCGTGATCAGCAACCCGATCAGCGAGGCCGCCATCACCGCGCCGAGCACTGCGGGAATGCCGCC GCTGCCACCGCTGCCGATGATCGCCACCATGGTCGCCACGCCAGCGAAGGACACCCCCTGGACCAGCGGCAA CTGACAGCCGAAGAACGGCACGCCGAGGGTTTGCAGCAGGGTCGCCAGGCCGCCGGCGAACAGCGAAGCGGC GATCAGCAGGCCGATGTCGCCGGGCGCGAGGCCAGCGGCCTGGCCGAGGATCAGGGGGACCGCGACGATACC GCCATACATGGTCAGCACATGTTGCAGGCCGTAGGCCATGTTGGCGCCGACACCGAGGTTCTCGTCTTCAGG CCGTGGAACGGATGGAGTTCCGGAGGACGTCGTTTTCATGGTGCGCTGTTCTCGCTTTTATTGTTGTGCGCA CACTGTAGACAATTCGATCCGAAAATATCCAGAAGAATGTATACAAAAATTCCAACAAATCTGTGA