ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6213

TrivialName: PA14_26100

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_26100

PAO1 Ortholog Locus:

Sequence Length: 1182

Protein Length: 393

Start: 2279662

Stop: 2280843

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK23765.1| (AE005853) hypothetical protein [Caulobacter crescentus CB15] Identities = 98/333 (29%), Positives = 129/333 (38%), Gaps = 30/333 (9%)

Sequence:

GTGGGGTCAGTGAGGGATGTGGCCGCCGAGGGACGGCTCGGTGGCAGCTTGGCGTGGCGCCAGCATCAGCAG
CAGGGCCACGGCCATCGCCGCCAGGCAGACCAGCGCGCCGACCTCGCCGAGCGGCGCCAGGCCGCTGCCGTC
GATCACCCGGCTGCCGGCGAGGGCGCCGATGCCGATCCCGGCGTTGCAGGCGGAGATGTTCAGCGAGGCGGC
GAACGCCGGGGCCCGCGGCGCGGACTTCATCACCCGCACCTGGCCGACGATGAACAGTGCTGCCTGGGCCAC
GCCCCAGGTCGCCAGGGTGGCGGCGAGCAGCCAGGCGTTGCCGAGGGTCGGCACCAGGGCGAGCATGCCCAG
CGCCATCAGCAGGACGAACAGCAGGGTTGCGCCCAGTGGGCTGCGATCCACCAGGCGCCCGCCGAGCCAGTT
GCCGAGCAGGCCTACCGCGCCGAAGCCCATCAGCGTCCAGCCGACCAGCGAACCGCTGAAGCCGGCCAGGCG
CTGGAGGATGTCGGCCAGGTAGGTGTAGGGGGTGAACATGCCGGTGAAGACCAGCAGCGACAGCAACAGGTG
GCCGAGCACCAGCGGTTGGCGCAACACGCTCGCCTGGCTGCGCAGCGAGACACCCGGCCGTCCGGGAATGCG
CGGCAGCCAGGCGGCCAGCAGCAGCGCCTTGGCCAGGGCCAGCGCGGCGAGTGCGGCGAATGCCAGGCGCCA
ACCCCAGGCGTCGGCGATCAGCGTGCCGATGGGAATGCCGAGCACGGTGGCGGCGACGATGCCGAAGAACAC
CAGCGCCACGGCGCGCCCTTCGCGCGAGGGGCCGGCCAGGTGCGCGGCGGTTTCGCTGGCCATGGCCCAGAA
CACCGGGAGCGCCAGGGCCGGGACGAAGCGCGCCACGGCCATCGTCCAGATATCGCCGGCCACGGCGGCCAG
CGCATTGGCCGCGGCGAACAGCAGCAGGCAGGCGACGAACAGCCGCTTGCGTTCGACGCCCGCCAGCGCGGC
GGTGAGGAACGGACCGAAGGCGGCGACGCTGAAGGCGAACAGGCTGACCAGCAGGCCGGCCTGGGCGACGCT
GACCTGGAGGTCTGCGGCAAGCGCCGGGAGCAGGCCGACGATGACGAACTCGGTGGTCAGGATGGTGAAGCC
GGCGGCGGCCAGCAGGAGGATCGGCAATAG

Translation:

MGSVRDVAAEGRLGGSLAWRQHQQQGHGHRRQADQRADLAERRQAAAVDHPAAGEGADADPGVAGGDVQRGG
ERRGPRRGLHHPHLADDEQCCLGHAPGRQGGGEQPGVAEGRHQGEHAQRHQQDEQQGCAQWAAIHQAPAEPV
AEQAYRAEAHQRPADQRTAEAGQALEDVGQVGVGGEHAGEDQQRQQQVAEHQRLAQHARLAAQRDTRPSGNA
RQPGGQQQRLGQGQRGECGECQAPTPGVGDQRADGNAEHGGGDDAEEHQRHGAPFARGAGQVRGGFAGHGPE
HRERQGRDEARHGHRPDIAGHGGQRIGRGEQQQAGDEQPLAFDARQRGGEERTEGGDAEGEQADQQAGLGDA
DLEVCGKRREQADDDELGGQDGEAGGGQQEDRQ*

AnnotationID:6214 GeneID:6213

AnnotatorUID: diggins

Modification Date/Time: 2004-11-30 20:08:25

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16016

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29544

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36104

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6213_cdd.html

URL:

GC ORFID: `49215`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2674263`	Stop: `2673082`
Length: `1182`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGGGGTCAGTGAGGGATGTGGCCGCCGAGGGACGGCTCGGTGGCAGCTTGGCGTGGCGCCAGCATCAGCAG CAGGGCCACGGCCATCGCCGCCAGGCAGACCAGCGCGCCGACCTCGCCGAGCGGCGCCAGGCCGCTGCCGTC GATCACCCGGCTGCCGGCGAGGGCGCCGATGCCGATCCCGGCGTTGCAGGCGGAGATGTTCAGCGAGGCGGC GAACGCCGGGGCCCGCGGCGCGGACTTCATCACCCGCACCTGGCCGACGATGAACAGTGCTGCCTGGGCCAC GCCCCAGGTCGCCAGGGTGGCGGCGAGCAGCCAGGCGTTGCCGAGGGTCGGCACCAGGGCGAGCATGCCCAG CGCCATCAGCAGGACGAACAGCAGGGTTGCGCCCAGTGGGCTGCGATCCACCAGGCGCCCGCCGAGCCAGTT GCCGAGCAGGCCTACCGCGCCGAAGCCCATCAGCGTCCAGCCGACCAGCGAACCGCTGAAGCCGGCCAGGCG CTGGAGGATGTCGGCCAGGTAGGTGTAGGGGGTGAACATGCCGGTGAAGACCAGCAGCGACAGCAACAGGTG GCCGAGCACCAGCGGTTGGCGCAACACGCTCGCCTGGCTGCGCAGCGAGACACCCGGCCGTCCGGGAATGCG CGGCAGCCAGGCGGCCAGCAGCAGCGCCTTGGCCAGGGCCAGCGCGGCGAGTGCGGCGAATGCCAGGCGCCA ACCCCAGGCGTCGGCGATCAGCGTGCCGATGGGAATGCCGAGCACGGTGGCGGCGACGATGCCGAAGAACAC CAGCGCCACGGCGCGCCCTTCGCGCGAGGGGCCGGCCAGGTGCGCGGCGGTTTCGCTGGCCATGGCCCAGAA CACCGGGAGCGCCAGGGCCGGGACGAAGCGCGCCACGGCCATCGTCCAGATATCGCCGGCCACGGCGGCCAG CGCATTGGCCGCGGCGAACAGCAGCAGGCAGGCGACGAACAGCCGCTTGCGTTCGACGCCCGCCAGCGCGGC GGTGAGGAACGGACCGAAGGCGGCGACGCTGAAGGCGAACAGGCTGACCAGCAGGCCGGCCTGGGCGACGCT GACCTGGAGGTCTGCGGCAAGCGCCGGGAGCAGGCCGACGATGACGAACTCGGTGGTCAGGATGGTGAAGCC GGCGGCGGCCAGCAGGAGGATCGGCAATAG