ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6211

TrivialName: PA14_26180

AnnotatorUID: danlee

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_26180

PAO1 Ortholog Locus:

Sequence Length: 1467

Protein Length: 488

Start: 2285982

Stop: 2287448

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Inactivated 2/07/06. Homology: gb|AAK22724.1| (AE005749) hypothetical protein [Caulobacter crescentus CB15] Identities = 126/467 (26%), Positives = 173/467 (37%), Gaps = 97/467 (20%)

Sequence:

GTGATCGCCTGCGCCCGGCCTGGGTGGCTGCCCAGCGGGGGGCCGGGCGCCGTTTCAGGGGTTCCTGAAGAC
GAATACGCCGCTGTCCACCAGGCGCGTCAGGCGGATGCGCAACAGCAGGGTGCGGTGGGCGGCGAGGAAGCG
CGGCACCTGCGCCAGCGGAATCGCCAGGCCTTCGCTGTCGCCGGGGCCCACCGCGGTATAGCCGACCGGCTG
GCGCGGCGGATCGAACGGCGGCTGGGCCGACACGCTGAGCGACAGGGTGTCCACGGCGAAGCCGGCGAGCAG
GTCGTCGAGGGACTCGATCGACAGGTACAGCGAGCGGTAGGCGGGGTTGTCCTCGTAGGGATGGACGTCGGC
GATGACCTGCTCGTAGAAGCGCTGCTCGAAACGCCGGTCGCTGTTCAGCTTGCGGAAGAACTGGATGAAGTA
GTCGCGCACCTCCTGGTCGAGGTCGTCGCAGACGTGGCTGACCAGGTTCAGGTAGCGCGGCGAGCGGCGCTC
GATGCCGGGGTCGAGCTGATCGATGCGGCGCTGCCAGGGGAAGCTTGCGCCGCTGCTCCGGTAATCGGCGTC
CTCGACCTCCAGTGCGGCGCGGATCAGCTCCAGGGTATGCGGGTTCTTCGGCCCGCGGTCCTTCAGCGCCAC
GCTGGCGTGGTTCTCGCCGTCGACGATGGCGAAGGCGATCTCGCCGCGCGATTCTTCCAGGCGCCAGCCGGG
CCTGGCGCGCTGGCGGACATCCAGTTCGAGGCTCAGGCGGCAGGCGTTGAGGTTCGCCGTGGCGATCCGCAC
CGTGCCGTCGCCGCCGACTTCGTTGGCGATGGCTTCGACGCCGCTGTAGCCGACATTGCCCACCAGTACCGT
GGCGAGCAGGCGGCCGGCGCCGTACCAGGCCTCGGCGCCGAACAGGTCGCGCTCGGCGAGTTGCCAGGAGTA
CGGCGAGCCCAGCTCCAGTCCCTTCAGCACCTGGGTGCCGGTCTGCCCGACGAAGCGGTTCCAGCCTTTCAG
CACGCGACCGATGAAGGAGCGTCCCTTGTGCGCCAGCGGCGAGCCGAAGTTGGCCGGGGCGAGCATCAGGAA
GCGCTTGACCGGCGCGCTGGCGGGGTCGAAGTGGCGGGTCAGCCAGTCGCGCAGCACCAGGGCGCCGGTGCT
GTGCACCACCACGTCCACCGTGCGCGGCGCCCGCGACAGTCCCTGGGCGGTCCAGGCGCGATCCAGGGCGGC
GGCGAGATCGGCGTAGGTGACGTCGTCCTGCAGGGAGATCCAGTCGGCGAGGCGGATCTGCGTCGGCGCGCT
GCCGAACCAGGCTTCCAGCTGCTCGGCGAGGCGGCGGAACGACTTCGAATCGTCGCTCCAGCCGTGGACGAT
GACGATCGAACGGGGCATGTCCGGCATCCTCTGGGGCTGATCCGGGCGACTATAGATCATGCGCCGCGGCGA
TGTGCCCTGACCTGTGAAAACGTCTAG

Translation:

MIACARPGWLPSGGPGAVSGVPEDEYAAVHQARQADAQQQGAVGGEEARHLRQRNRQAFAVAGAHRGIADRL
ARRIERRLGRHAERQGVHGEAGEQVVEGLDRQVQRAVGGVVLVGMDVGDDLLVEALLETPVAVQLAEELDEV
VAHLLVEVVADVADQVQVARRAALDAGVELIDAALPGEACAAAPVIGVLDLQCGADQLQGMRVLRPAVLQRH
AGVVLAVDDGEGDLAARFFQAPAGPGALADIQFEAQAAGVEVRRGDPHRAVAADFVGDGFDAAVADIAHQYR
GEQAAGAVPGLGAEQVALGELPGVRRAQLQSLQHLGAGLPDEAVPAFQHATDEGASLVRQRRAEVGRGEHQE
ALDRRAGGVEVAGQPVAQHQGAGAVHHHVHRARRPRQSLGGPGAIQGGGEIGVGDVVLQGDPVGEADLRRRA
AEPGFQLLGEAAERLRIVAPAVDDDDRTGHVRHPLGLIRATIDHAPRRCALTCENV*

AnnotationID:6212 GeneID:6211

AnnotatorUID: diggins

Modification Date/Time: 2004-11-30 20:08:51

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16012

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29540

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36106

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6211_cdd.html

URL:

GC ORFID: `49213`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2667943`	Stop: `2666477`
Length: `1467`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGATCGCCTGCGCCCGGCCTGGGTGGCTGCCCAGCGGGGGGCCGGGCGCCGTTTCAGGGGTTCCTGAAGAC GAATACGCCGCTGTCCACCAGGCGCGTCAGGCGGATGCGCAACAGCAGGGTGCGGTGGGCGGCGAGGAAGCG CGGCACCTGCGCCAGCGGAATCGCCAGGCCTTCGCTGTCGCCGGGGCCCACCGCGGTATAGCCGACCGGCTG GCGCGGCGGATCGAACGGCGGCTGGGCCGACACGCTGAGCGACAGGGTGTCCACGGCGAAGCCGGCGAGCAG GTCGTCGAGGGACTCGATCGACAGGTACAGCGAGCGGTAGGCGGGGTTGTCCTCGTAGGGATGGACGTCGGC GATGACCTGCTCGTAGAAGCGCTGCTCGAAACGCCGGTCGCTGTTCAGCTTGCGGAAGAACTGGATGAAGTA GTCGCGCACCTCCTGGTCGAGGTCGTCGCAGACGTGGCTGACCAGGTTCAGGTAGCGCGGCGAGCGGCGCTC GATGCCGGGGTCGAGCTGATCGATGCGGCGCTGCCAGGGGAAGCTTGCGCCGCTGCTCCGGTAATCGGCGTC CTCGACCTCCAGTGCGGCGCGGATCAGCTCCAGGGTATGCGGGTTCTTCGGCCCGCGGTCCTTCAGCGCCAC GCTGGCGTGGTTCTCGCCGTCGACGATGGCGAAGGCGATCTCGCCGCGCGATTCTTCCAGGCGCCAGCCGGG CCTGGCGCGCTGGCGGACATCCAGTTCGAGGCTCAGGCGGCAGGCGTTGAGGTTCGCCGTGGCGATCCGCAC CGTGCCGTCGCCGCCGACTTCGTTGGCGATGGCTTCGACGCCGCTGTAGCCGACATTGCCCACCAGTACCGT GGCGAGCAGGCGGCCGGCGCCGTACCAGGCCTCGGCGCCGAACAGGTCGCGCTCGGCGAGTTGCCAGGAGTA CGGCGAGCCCAGCTCCAGTCCCTTCAGCACCTGGGTGCCGGTCTGCCCGACGAAGCGGTTCCAGCCTTTCAG CACGCGACCGATGAAGGAGCGTCCCTTGTGCGCCAGCGGCGAGCCGAAGTTGGCCGGGGCGAGCATCAGGAA GCGCTTGACCGGCGCGCTGGCGGGGTCGAAGTGGCGGGTCAGCCAGTCGCGCAGCACCAGGGCGCCGGTGCT GTGCACCACCACGTCCACCGTGCGCGGCGCCCGCGACAGTCCCTGGGCGGTCCAGGCGCGATCCAGGGCGGC GGCGAGATCGGCGTAGGTGACGTCGTCCTGCAGGGAGATCCAGTCGGCGAGGCGGATCTGCGTCGGCGCGCT GCCGAACCAGGCTTCCAGCTGCTCGGCGAGGCGGCGGAACGACTTCGAATCGTCGCTCCAGCCGTGGACGAT GACGATCGAACGGGGCATGTCCGGCATCCTCTGGGGCTGATCCGGGCGACTATAGATCATGCGCCGCGGCGA TGTGCCCTGACCTGTGAAAACGTCTAG