ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6209

TrivialName: PA14_26250

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_26250

PAO1 Ortholog Locus:

Sequence Length: 1410

Protein Length: 469

Start: 2290669

Stop: 2292078

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAB91748.1| (AE000082) Y4kQ [Rhizobium sp. NGR234] Identities = 31/63 (49%), Positives = 41/63 (65%)

Sequence:

GTGCGGCGAGGAGGAGGGAGAGGGCGATGCTGCCGAGGGTTCTTGTCATTGTGGTTGTCCTCTGTCGATCCG
CGCGCGCCAGGCCGCGCGCCCGTTGAAAACCCTGGCTCAGGCCAGGAAGCGCTCGGCCAGTCGCACCCAGTA
GCTGGCGCCGACGGCCAGGCAGTCGTCGTTGAAGTCGTAGCCGGGGTTGTGCAACTGGCAGCCGCTCTCGCC
CTGGCCGTTGCCGATCACCAGGTAGCTGCCGGGACAGCGTTCGAGGATGAAGGCGAAATCCTCGCTGGCGGT
GAACGGCCGCAGTCCGTCGATCAGGCATTCCTCGCCCAGCCAGTCGCGGGCCACCTCGCGGGCGAACGCGGT
CTGCCCGGGATGGTTGACCAGCACCGGATGGCAATGCCGGTAGTCGACCTCCGCCCGCGCGCCGAAGCTGGC
GGCCTGGCCGCGGGCCAGTTCGCCGATGCGGCGCTCCAGCAGGGCACGGGTTTCCGCGGTCAGGGCGCGGAC
GCTGAGGATCATTTCGGCGCTGGCCGGGATCACGTTGGAGACCGTCCCGGCATGGATTGCGCCGACGCTGAC
GATCGCGGTGTCCTGCGGGTCGACGTTGCGCGAGACGATGCTCTGCAAGGCCAGCACGATGGCGGAGCAGAC
CACCACCGGGTCGACGGTGCGCTGCGGCACCGCGCCGTGGCCGCCGCTGCCGATCACGCGGATGACCACGGT
GTCGGCCGAGGCCATGAAGGGGCCGGGATGGAAGCCGAGGTGGCCGACGGGGTATCCCGGGACGTTGTGCAT
GGCGAAGATGGCGTCGCAGGGGAAGCGCTCCAGCAGCCCGTCGTCGAGCATCGCGCGGGCACCGCCGAGGCC
CTCTTCGGCAGGCTGGAAGATCAGTTGCAGGGTGCCGCGCCAGTGCGGCGACTCGACCAGGTGCCTGGCCGC
GGCGAGGAGCATCGCGGTGTGGCCGTCGTGGCCGCAGGCGTGCATCACGCCGTCCACCTGGCTGGCGTAGGG
CAGGCCGGTGGCTTCCTGGATCGGCAGCGCGTCCATGTCGGCGCGCAGGCCCAGCGCGGGGCCCTCGCCGCG
GCACAGGGTGCCGACCACGCCGGTGCGACCCACCCCACGGCTGACCTGGTAGCCCCAGGCCTCCAGGCATTC
GGCGACCAGCGCGGCGGTTCGCCGTTCCTCGAAACCCAGCTCCGGGTGGGCATGGATGTGGCGGCGCAAGGT
AACCATCTCTTCCCGCAGCGCCGCGATGGCGGGCAGGACGGCAGGCTCGGTCATTCTTCTTGTTCTCCTCAA
GGGCTCCGACCGGTGGGCGGCAGGGCGTTGTCGAAGCCGATGGTAGGCAAGCGGGGGACTGGCGGGGAGGCT
CGCTTTGGCTATGATGACAACCTTTCGTTGTCACCTCGGTAA

Translation:

MRRGGGRGRCCRGFLSLWLSSVDPRAPGRAPVENPGSGQEALGQSHPVAGADGQAVVVEVVAGVVQLAAALA
LAVADHQVAAGTAFEDEGEILAGGERPQSVDQAFLAQPVAGHLAGERGLPGMVDQHRMAMPVVDLRPRAEAG
GLAAGQFADAALQQGTGFRGQGADAEDHFGAGRDHVGDRPGMDCADADDRGVLRVDVARDDALQGQHDGGAD
HHRVDGALRHRAVAAAADHADDHGVGRGHEGAGMEAEVADGVSRDVVHGEDGVAGEALQQPVVEHRAGTAEA
LFGRLEDQLQGAAPVRRLDQVPGRGEEHRGVAVVAAGVHHAVHLAGVGQAGGFLDRQRVHVGAQAQRGALAA
AQGADHAGATHPTADLVAPGLQAFGDQRGGSPFLETQLRVGMDVAAQGNHLFPQRRDGGQDGRLGHSSCSPQ
GLRPVGGRALSKPMVGKRGTGGEARFGYDDNLSLSPR*

AnnotationID:6210 GeneID:6209

AnnotatorUID: diggins

Modification Date/Time: 2004-11-30 20:08:59

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16008

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29536

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36107

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6209_cdd.html

URL:

GC ORFID: `49211`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2663256`	Stop: `2661847`
Length: `1410`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGCGGCGAGGAGGAGGGAGAGGGCGATGCTGCCGAGGGTTCTTGTCATTGTGGTTGTCCTCTGTCGATCCG CGCGCGCCAGGCCGCGCGCCCGTTGAAAACCCTGGCTCAGGCCAGGAAGCGCTCGGCCAGTCGCACCCAGTA GCTGGCGCCGACGGCCAGGCAGTCGTCGTTGAAGTCGTAGCCGGGGTTGTGCAACTGGCAGCCGCTCTCGCC CTGGCCGTTGCCGATCACCAGGTAGCTGCCGGGACAGCGTTCGAGGATGAAGGCGAAATCCTCGCTGGCGGT GAACGGCCGCAGTCCGTCGATCAGGCATTCCTCGCCCAGCCAGTCGCGGGCCACCTCGCGGGCGAACGCGGT CTGCCCGGGATGGTTGACCAGCACCGGATGGCAATGCCGGTAGTCGACCTCCGCCCGCGCGCCGAAGCTGGC GGCCTGGCCGCGGGCCAGTTCGCCGATGCGGCGCTCCAGCAGGGCACGGGTTTCCGCGGTCAGGGCGCGGAC GCTGAGGATCATTTCGGCGCTGGCCGGGATCACGTTGGAGACCGTCCCGGCATGGATTGCGCCGACGCTGAC GATCGCGGTGTCCTGCGGGTCGACGTTGCGCGAGACGATGCTCTGCAAGGCCAGCACGATGGCGGAGCAGAC CACCACCGGGTCGACGGTGCGCTGCGGCACCGCGCCGTGGCCGCCGCTGCCGATCACGCGGATGACCACGGT GTCGGCCGAGGCCATGAAGGGGCCGGGATGGAAGCCGAGGTGGCCGACGGGGTATCCCGGGACGTTGTGCAT GGCGAAGATGGCGTCGCAGGGGAAGCGCTCCAGCAGCCCGTCGTCGAGCATCGCGCGGGCACCGCCGAGGCC CTCTTCGGCAGGCTGGAAGATCAGTTGCAGGGTGCCGCGCCAGTGCGGCGACTCGACCAGGTGCCTGGCCGC GGCGAGGAGCATCGCGGTGTGGCCGTCGTGGCCGCAGGCGTGCATCACGCCGTCCACCTGGCTGGCGTAGGG CAGGCCGGTGGCTTCCTGGATCGGCAGCGCGTCCATGTCGGCGCGCAGGCCCAGCGCGGGGCCCTCGCCGCG GCACAGGGTGCCGACCACGCCGGTGCGACCCACCCCACGGCTGACCTGGTAGCCCCAGGCCTCCAGGCATTC GGCGACCAGCGCGGCGGTTCGCCGTTCCTCGAAACCCAGCTCCGGGTGGGCATGGATGTGGCGGCGCAAGGT AACCATCTCTTCCCGCAGCGCCGCGATGGCGGGCAGGACGGCAGGCTCGGTCATTCTTCTTGTTCTCCTCAA GGGCTCCGACCGGTGGGCGGCAGGGCGTTGTCGAAGCCGATGGTAGGCAAGCGGGGGACTGGCGGGGAGGCT CGCTTTGGCTATGATGACAACCTTTCGTTGTCACCTCGGTAA