ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6203

TrivialName: PA14_26430

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_26430

PAO1 Ortholog Locus:

Sequence Length: 2208

Protein Length: 735

Start: 2303673

Stop: 2301466

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 185/610 (30%), Positives = 226/610 (37%), Gaps = 123/610 (20%)

Sequence:

ATGGGAAGGCGAGGATTTCACGACCCTCGCAAGCCCGGAGACCGGCCTGCAACGCCCTGTTGGCACACCCGC
GGTGGGCGGGAGCGAGCCGGTTGTTCGAGGCGCTGTCGCGCCTGCGATTTCCTGCGCGTTCCGTCCTGCCCG
GTCATGAGATGGAACGCCCATGCCCCGCTTCAGCCGTTTGCGCACCGAGCCTTTCGCCCTCGGCCTATCCAC
CAGCCTGCTGCTGGTACCGCCCGCCCTCGCCGAAACCGAGGAAGCCGCCCTCGCCCTGCCCAGCCAGTTGGT
CAGCGTTCGCCAGGACCCCGCCGAACTCGACCACATCGATCTCGCCACGCCGGTCAGTGCCGGTTCGCGCCT
GGGCCTCAGCGCCCTGGACACCCCGGCGAGCACCAGCAGCATCAGCGGCGAGGAAGTTCGCCGGCGCAACAA
CCCCAGCGTCCAGGCCGCCGTCACCCGCAGCCCCGGCATCAGCTTCATCGGCACCCCAGGAGATGGCGGTAC
CGGCCTCTCGGCGCGCGGCTTCAGCGGCCACGCATCGGTGATGCAACTGTTCGACGGCACGCGCCTGTACAC
CGGCATGGGCACGGTGAACTTCCCCAGCGATCCGTGGATGGTCGAGCGCATCGACGTGATCCGCGGCCCGGC
CTCGGTGCTGTACGGCGAAGGCGCCACCGGCGCGGTGATCAACGTGGTGCCGAAGAAGCCTTTCGCCGGCGA
GATCCGCAACCACCTGCGCCTCGGCTACGGCTCCTACGACAACCGCCAGTTGGCCCTGGACAGCGGCGGCTC
GCTGACCGACAGCCTCAGCTACCGGCTCAACCTGAACCAGCAGCAGAGCCACGGCTGGATCGACCGTGGCGA
CTCGCGCAACCTGGGCATCAGCGCGGCGCTGCGCTGGCAGGCCAGCGACGATCTGGCCTTCACCCTCGCCCA
CGACTATGGCGACCAGGAGCCGATGAACGACTTCGGCACCCCGCTGGTCGGCGGCAAGTACCACAAGCGCCT
GCGCGAGAAGAACTACAACGTGCGCAACGACGTGCAGCGCTACAACGACCAGTGGACCCGCCTGACCAGCGA
CTGGAGCCTTTCCGACAGCGTCACCGCGAGCAACCAGCTGTACTACATCAAGGCCCGCCGCCACTGGCGCAA
CGCCGAAACCTACGAATGGGACGTCCCGCGCGAAGAGCTGTTGCGCAAGGACTACCTGCGCATCAGCCACGA
GCAGGAGCAGATCGGCGACCGCCAGACCTTCGCCTTCCAGCACGCCCTGTTCGGCCTCGACAGCCGCACCCT
GGTCGGCGCCGAGTACAACCGCATCCGCTTCCGCCTGACCAACAACTCGCCCTATACCGATGTCGGCGGCGA
CTACATCGACCCCTGGCACCCCGCGCCCGGCTACTTCGAAAGCCGCTCGCCCTACCGGCCGCACTCGCGCAG
CCAGACCCGCACCTTCGCCCTGTTCGCCGAGAACCGCCTGCAGCTCAACGAGCGCCTGTCGCTGGTGACCGG
GGTGCGCCGCGACCAGAACCATATCGACCGCGACGACCTGCGCGCCGGCACCCGCAGCGACCGCAGCCTGCA
GGGCGGCAACTGGCGCGCCGGGCTGGTCTTCGCGCTGACCCCGGAACTGTCGCTGTACGGCCAGTACTCCAC
CAGCGAGGACGGCGTGAGCAACCTGATCACCCTCAACGCGGCCCAGCAGCAAATGGACCTGACCCACTCGAA
GCAGACCGAGGTCGGCCTCAAGCAACTGTTCCCGGACGGTCGCGGCGAATGGACCCTGGCCGCCTACCATAT
CGTCAAGAAGAAGCTGCTCAGCGCCAACCCGCTGCCGCCGCACGACGCGCAGCAGGTCGGCCAGCAGAGTTC
GGACGGCCTGGAGGCCAGCCTGGAACTGAACCTGGCCCAGGACTGGCGGCTGTCGGCGAACGCCGCGCTGGT
GCGTGCCGAATACGACGACTTCGACGAAACGATCGACAAGCAGACCTACTCGCGCAACGGCAACCGCCCCAG
GAACGTGCCACGGCGCACCGCCAACCTCTGGCTGGACAAGTCCTTCGCCGATACCCTGCGCGTCGGCGCCGG
GCTGCGCTACGTCGACCGGCGCTACGCCGACGCCGCCAACCAGGCCAGCCTGCCCGGCTACACGGTGGTCGA
CGCCAACCTGGGCTGGCGGGTACGGCCGGACCTGACCCTCGGCCTTGA

Translation:

MGRRGFHDPRKPGDRPATPCWHTRGGRERAGCSRRCRACDFLRVPSCPVMRWNAHAPLQPFAHRAFRPRPIH
QPAAGTARPRRNRGSRPRPAQPVGQRSPGPRRTRPHRSRHAGQCRFAPGPQRPGHPGEHQQHQRRGSSPAQQ
PQRPGRRHPQPRHQLHRHPRRWRYRPLGARLQRPRIGDATVRRHAPVHRHGHGELPQRSVDGRAHRRDPRPG
LGAVRRRRHRRGDQRGAEEAFRRRDPQPPAPRLRLLRQPPVGPGQRRLADRQPQLPAQPEPAAEPRLDRPWR
LAQPGHQRGAALAGQRRSGLHPRPRLWRPGADERLRHPAGRRQVPQAPAREELQRAQRRAALQRPVDPPDQR
LEPFRQRHREQPAVLHQGPPPLAQRRNLRMGRPARRAVAQGLPAHQPRAGADRRPPDLRLPARPVRPRQPHP
GRRRVQPHPLPPDQQLALYRCRRRLHRPLAPRARLLRKPLALPAALAQPDPHLRPVRREPPAAQRAPVAGDR
GAPRPEPYRPRRPARRHPQRPQPAGRQLARRAGLRADPGTVAVRPVLHQRGRREQPDHPQRGPAANGPDPLE
ADRGRPQATVPGRSRRMDPGRLPYRQEEAAQRQPAAAARRAAGRPAEFGRPGGQPGTEPGPGLAAVGERRAG
ACRIRRLRRNDRQADLLAQRQPPQERATAHRQPLAGQVLRRYPARRRRAALRRPALRRRRQPGQPARLHGGR
RQPGLAGTAGPDPRP*

AnnotationID:6204 GeneID:6203

AnnotatorUID: diggins

Modification Date/Time: 2004-11-30 21:09:50

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:12260

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29523

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36110

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6203_cdd.html

URL:

GC ORFID: `49205`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2650252`	Stop: `2652459`
Length: `2208`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGGAAGGCGAGGATTTCACGACCCTCGCAAGCCCGGAGACCGGCCTGCAACGCCCTGTTGGCACACCCGC GGTGGGCGGGAGCGAGCCGGTTGTTCGAGGCGCTGTCGCGCCTGCGATTTCCTGCGCGTTCCGTCCTGCCCG GTCATGAGATGGAACGCCCATGCCCCGCTTCAGCCGTTTGCGCACCGAGCCTTTCGCCCTCGGCCTATCCAC CAGCCTGCTGCTGGTACCGCCCGCCCTCGCCGAAACCGAGGAAGCCGCCCTCGCCCTGCCCAGCCAGTTGGT CAGCGTTCGCCAGGACCCCGCCGAACTCGACCACATCGATCTCGCCACGCCGGTCAGTGCCGGTTCGCGCCT GGGCCTCAGCGCCCTGGACACCCCGGCGAGCACCAGCAGCATCAGCGGCGAGGAAGTTCGCCGGCGCAACAA CCCCAGCGTCCAGGCCGCCGTCACCCGCAGCCCCGGCATCAGCTTCATCGGCACCCCAGGAGATGGCGGTAC CGGCCTCTCGGCGCGCGGCTTCAGCGGCCACGCATCGGTGATGCAACTGTTCGACGGCACGCGCCTGTACAC CGGCATGGGCACGGTGAACTTCCCCAGCGATCCGTGGATGGTCGAGCGCATCGACGTGATCCGCGGCCCGGC CTCGGTGCTGTACGGCGAAGGCGCCACCGGCGCGGTGATCAACGTGGTGCCGAAGAAGCCTTTCGCCGGCGA GATCCGCAACCACCTGCGCCTCGGCTACGGCTCCTACGACAACCGCCAGTTGGCCCTGGACAGCGGCGGCTC GCTGACCGACAGCCTCAGCTACCGGCTCAACCTGAACCAGCAGCAGAGCCACGGCTGGATCGACCGTGGCGA CTCGCGCAACCTGGGCATCAGCGCGGCGCTGCGCTGGCAGGCCAGCGACGATCTGGCCTTCACCCTCGCCCA CGACTATGGCGACCAGGAGCCGATGAACGACTTCGGCACCCCGCTGGTCGGCGGCAAGTACCACAAGCGCCT GCGCGAGAAGAACTACAACGTGCGCAACGACGTGCAGCGCTACAACGACCAGTGGACCCGCCTGACCAGCGA CTGGAGCCTTTCCGACAGCGTCACCGCGAGCAACCAGCTGTACTACATCAAGGCCCGCCGCCACTGGCGCAA CGCCGAAACCTACGAATGGGACGTCCCGCGCGAAGAGCTGTTGCGCAAGGACTACCTGCGCATCAGCCACGA GCAGGAGCAGATCGGCGACCGCCAGACCTTCGCCTTCCAGCACGCCCTGTTCGGCCTCGACAGCCGCACCCT GGTCGGCGCCGAGTACAACCGCATCCGCTTCCGCCTGACCAACAACTCGCCCTATACCGATGTCGGCGGCGA CTACATCGACCCCTGGCACCCCGCGCCCGGCTACTTCGAAAGCCGCTCGCCCTACCGGCCGCACTCGCGCAG CCAGACCCGCACCTTCGCCCTGTTCGCCGAGAACCGCCTGCAGCTCAACGAGCGCCTGTCGCTGGTGACCGG GGTGCGCCGCGACCAGAACCATATCGACCGCGACGACCTGCGCGCCGGCACCCGCAGCGACCGCAGCCTGCA GGGCGGCAACTGGCGCGCCGGGCTGGTCTTCGCGCTGACCCCGGAACTGTCGCTGTACGGCCAGTACTCCAC CAGCGAGGACGGCGTGAGCAACCTGATCACCCTCAACGCGGCCCAGCAGCAAATGGACCTGACCCACTCGAA GCAGACCGAGGTCGGCCTCAAGCAACTGTTCCCGGACGGTCGCGGCGAATGGACCCTGGCCGCCTACCATAT CGTCAAGAAGAAGCTGCTCAGCGCCAACCCGCTGCCGCCGCACGACGCGCAGCAGGTCGGCCAGCAGAGTTC GGACGGCCTGGAGGCCAGCCTGGAACTGAACCTGGCCCAGGACTGGCGGCTGTCGGCGAACGCCGCGCTGGT GCGTGCCGAATACGACGACTTCGACGAAACGATCGACAAGCAGACCTACTCGCGCAACGGCAACCGCCCCAG GAACGTGCCACGGCGCACCGCCAACCTCTGGCTGGACAAGTCCTTCGCCGATACCCTGCGCGTCGGCGCCGG GCTGCGCTACGTCGACCGGCGCTACGCCGACGCCGCCAACCAGGCCAGCCTGCCCGGCTACACGGTGGTCGA CGCCAACCTGGGCTGGCGGGTACGGCCGGACCTGACCCTCGGCCTTGA