ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6202

TrivialName: PA14_26440

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_26440

PAO1 Ortholog Locus:

Sequence Length: 1875

Protein Length: 624

Start: 2304044

Stop: 2305918

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAA25799.1| (M59301) ORF 6 [Pseudomonas denitrificans] Identities = 58/173 (33%), Positives = 78/173 (45%), Gaps = 7/173 (4%)

Sequence:

ATGGCCAGCGCATCCAACCGGATTGGTGAGACCAACGACATTCCTGCGCCGAAGCCGGGCCGCGGGGTCATG
TCGTTGACTCATGCCCGGCTGGAGTATCCGCGTGAATCCCGTTTCCCTGATCTTCCTCGCCTTCGCCATGTC
CACCGATGCCTTTGCCGCGGCCATCGGCAAGGGCTCCAGCCTGGATCGGCCGCGCCTGTCGGAGGCGCTGCG
CACCGGGATAATCTTCGGCGTGATCGAGGCCATCACCCCTCTGGTCGGCTGGCTGCTTGGCCAGGCCGCCAG
CCAGTTCGTCGCCGACTGGGACCACTGGATCGCCTTCGTCCTGCTGGTGCTGCTCGGCCTGCACATGATCCA
CAACGGCCTGCGCGCGGATCATGCGACGGAACAGGAAAAGCCCGGCCAGCATTCGTTCTGGATTCTCGCGGT
GACGGCGCTGGCCACCAGCATCGACGCGCTGGCGGTGGGCGTCGGCCTGGCCTTCGTCGACGTCAACATCTT
CCTCGCCGCTGGCGCCATCGGCCTGGCCACCATGACCATGGTCACCCTCGGCACCATGCTCGGCCGGGCGCT
CGGCGCAGTGACCGGCAAGCGCGCGGAGATGGTCGGCGGGGTGGTGCTGATCCTGGTCGGTGCGACCATTCT
CTACGAGCATCTCAGCGCGGCGTGAGCGGCGCCGGAGACGGGGCGGGACAGGTCGCGGCGAGTGGGTGGGCG
TTCGCTTCAGGCGCTTTCCCAATCGCGGATTGCCGCCAGCAGCGCCTCGCCGTCGGCGAACTCGCGGTCCGC
CGGCGGCAGCGCCGGACGTGCCAGGACCAGCACCGGCAGGCCCATTTCCCGCGCCACCTGGAGCTTCGGCTG
GGTGGCCTGGCTACCGCTGTTCTTGCTCACCAGCACGTCGCAGGCGAGGCGCTCGAACAACGCCCGTTCGCC
ATCCAGGCTGAACGGCCCGCGCGCGCCGATCACCTCGGCGCGCGGCGCGGCCGGCTGGCCTTGCAGGCAGCG
CACGGTCCAGTGCTGGTGCGGCGGGACCTGGCCGAGATGCTCCAGCGGTTCGCGGCCGAGGGTGAACAGCGG
ACGGCGGAAGGGTGCGAGGGCGGCGATCAGCTCGCGCCAGTCGGCTACCTCGCGCCAGTCGTCGCCGGGCCC
GGCCTGCCAGCCGGGCCGGCGCAGCGCCCAGCAGGGCACTCCGGCCAGTCGCGCGGCGCGCACGGCGTTCTG
GCTGATCCGTGCGGCGTAGGGGTGGGTGGCGTCCACCAGCAGGTCGAAGCCCTGCTCGTCGATGAACGCCGC
CAGCCCTTCGGCGCCGCCGTAGCCGCCGACCCGGACCCGGCAGGCCAGGTCGCCGGGCACCTTGCCCAACCC
GGCGAGGCTGTAGAGATGCGCCGGACCGAGCCGGCGGGCGAGGGCCAGGGCCTCACCGATCCCGCCGAGCAG
CAACAGGCGCTTCATCGGCGCTCCTCGCAGGCCTGGCCGACCAGGTTGCCCTGGCGGTCGATGGCGAAGACT
TCCAGCGCCACCTCGGTGGGCACGATGCCGCGGGCGAAGCGCAGGGCGTGGGCGCAGACCGCATCGCCCAGG
GCCACGCCTTCGGCGTGTGCCTGGGCCAGCGCCTGCTGGCTGGTGTTGGCGGCGCGCATGCTGTCCTGTAGC
GCGGTGCTGGCACCGAGCGCGGCGGCCCAGCCGGCCAATTGCGGCAGGTCGATGCTGGAATGGCGGCTGTGC
AGGTCGAGGTGGCCGCCGGCGAGCTTGCTGATCTTGCCGAAGCCGCCGCACAGGCTGAGCTTTTCCACCGGT
GCCTTGCGCAGGTGCTTGAGCACCGCGCCGGCGAAGTCGCCCATCTCGATCAGGGCGATCTCCGGCAGCCCA
TAG

Translation:

MASASNRIGETNDIPAPKPGRGVMSLTHARLEYPRESRFPDLPRLRHVHRCLCRGHRQGLQPGSAAPVGGAA
HRDNLRRDRGHHPSGRLAAWPGRQPVRRRLGPLDRLRPAGAARPAHDPQRPARGSCDGTGKARPAFVLDSRG
DGAGHQHRRAGGGRRPGLRRRQHLPRRWRHRPGHHDHGHPRHHARPGARRSDRQARGDGRRGGADPGRCDHS
LRASQRGVSGAGDGAGQVAASGWAFASGAFPIADCRQQRLAVGELAVRRRQRRTCQDQHRQAHFPRHLELRL
GGLATAVLAHQHVAGEALEQRPFAIQAERPARADHLGARRGRLALQAAHGPVLVRRDLAEMLQRFAAEGEQR
TAEGCEGGDQLAPVGYLAPVVAGPGLPAGPAQRPAGHSGQSRGAHGVLADPCGVGVGGVHQQVEALLVDERR
QPFGAAVAADPDPAGQVAGHLAQPGEAVEMRRTEPAGEGQGLTDPAEQQQALHRRSSQAWPTRLPWRSMAKT
SSATSVGTMPRAKRRAWAQTASPRATPSACAWASACWLVLAARMLSCSAVLAPSAAAQPANCGRSMLEWRLC
RSRWPPASLLILPKPPHRLSFSTGALRRCLSTAPAKSPISIRAISGSP*

AnnotationID:6203 GeneID:6202

AnnotatorUID: diggins

Modification Date/Time: 2004-12-01 10:10:11

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:12258

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29521

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36130

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6202_cdd.html

URL:

GC ORFID: `49204`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2649881`	Stop: `2648007`
Length: `1875`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGCCAGCGCATCCAACCGGATTGGTGAGACCAACGACATTCCTGCGCCGAAGCCGGGCCGCGGGGTCATG TCGTTGACTCATGCCCGGCTGGAGTATCCGCGTGAATCCCGTTTCCCTGATCTTCCTCGCCTTCGCCATGTC CACCGATGCCTTTGCCGCGGCCATCGGCAAGGGCTCCAGCCTGGATCGGCCGCGCCTGTCGGAGGCGCTGCG CACCGGGATAATCTTCGGCGTGATCGAGGCCATCACCCCTCTGGTCGGCTGGCTGCTTGGCCAGGCCGCCAG CCAGTTCGTCGCCGACTGGGACCACTGGATCGCCTTCGTCCTGCTGGTGCTGCTCGGCCTGCACATGATCCA CAACGGCCTGCGCGCGGATCATGCGACGGAACAGGAAAAGCCCGGCCAGCATTCGTTCTGGATTCTCGCGGT GACGGCGCTGGCCACCAGCATCGACGCGCTGGCGGTGGGCGTCGGCCTGGCCTTCGTCGACGTCAACATCTT CCTCGCCGCTGGCGCCATCGGCCTGGCCACCATGACCATGGTCACCCTCGGCACCATGCTCGGCCGGGCGCT CGGCGCAGTGACCGGCAAGCGCGCGGAGATGGTCGGCGGGGTGGTGCTGATCCTGGTCGGTGCGACCATTCT CTACGAGCATCTCAGCGCGGCGTGAGCGGCGCCGGAGACGGGGCGGGACAGGTCGCGGCGAGTGGGTGGGCG TTCGCTTCAGGCGCTTTCCCAATCGCGGATTGCCGCCAGCAGCGCCTCGCCGTCGGCGAACTCGCGGTCCGC CGGCGGCAGCGCCGGACGTGCCAGGACCAGCACCGGCAGGCCCATTTCCCGCGCCACCTGGAGCTTCGGCTG GGTGGCCTGGCTACCGCTGTTCTTGCTCACCAGCACGTCGCAGGCGAGGCGCTCGAACAACGCCCGTTCGCC ATCCAGGCTGAACGGCCCGCGCGCGCCGATCACCTCGGCGCGCGGCGCGGCCGGCTGGCCTTGCAGGCAGCG CACGGTCCAGTGCTGGTGCGGCGGGACCTGGCCGAGATGCTCCAGCGGTTCGCGGCCGAGGGTGAACAGCGG ACGGCGGAAGGGTGCGAGGGCGGCGATCAGCTCGCGCCAGTCGGCTACCTCGCGCCAGTCGTCGCCGGGCCC GGCCTGCCAGCCGGGCCGGCGCAGCGCCCAGCAGGGCACTCCGGCCAGTCGCGCGGCGCGCACGGCGTTCTG GCTGATCCGTGCGGCGTAGGGGTGGGTGGCGTCCACCAGCAGGTCGAAGCCCTGCTCGTCGATGAACGCCGC CAGCCCTTCGGCGCCGCCGTAGCCGCCGACCCGGACCCGGCAGGCCAGGTCGCCGGGCACCTTGCCCAACCC GGCGAGGCTGTAGAGATGCGCCGGACCGAGCCGGCGGGCGAGGGCCAGGGCCTCACCGATCCCGCCGAGCAG CAACAGGCGCTTCATCGGCGCTCCTCGCAGGCCTGGCCGACCAGGTTGCCCTGGCGGTCGATGGCGAAGACT TCCAGCGCCACCTCGGTGGGCACGATGCCGCGGGCGAAGCGCAGGGCGTGGGCGCAGACCGCATCGCCCAGG GCCACGCCTTCGGCGTGTGCCTGGGCCAGCGCCTGCTGGCTGGTGTTGGCGGCGCGCATGCTGTCCTGTAGC GCGGTGCTGGCACCGAGCGCGGCGGCCCAGCCGGCCAATTGCGGCAGGTCGATGCTGGAATGGCGGCTGTGC AGGTCGAGGTGGCCGCCGGCGAGCTTGCTGATCTTGCCGAAGCCGCCGCACAGGCTGAGCTTTTCCACCGGT GCCTTGCGCAGGTGCTTGAGCACCGCGCCGGCGAAGTCGCCCATCTCGATCAGGGCGATCTCCGGCAGCCCA TAG