ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6201

TrivialName: PA14_26520

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_26520

PAO1 Ortholog Locus:

Sequence Length: 3459

Protein Length: 1152

Start: 2313960

Stop: 2310502

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 143/546 (26%), Positives = 185/546 (33%), Gaps = 94/546 (17%)

Sequence:

TTGCCCGGCATCAGTCGGTCTCCCCCAGTTGCTTGCGCAGACGTTTCAGGCTCTTGTCCAGCTCGCCGAGCT
GGTCCTTGCTCTTCTGCGTCAGCACCTTGGACTCGGCGAGGCGTGCGTCCAGCTCGGCCTGCTCGGCCAACA
GGCGCGCCTTCTTGTAGGACTCCGCGGTCATCGCGATCTGCGCCGCGGCGTACTTGTCCTGGGCCAGTTTCA
GCTCGGCCACGTCGTCGGTGGCACCCACCGCCTTGGCCTGCTCCAGCGCCTGTTCGGTCAGGCGCATCTGCT
CCAGCGGAGCCGGGTCGTTGCTCGCACAACCGCTCAGGGTCAGCGCGGCGAGGCCTGCGGCCATCATCCATC
GAATGCTCACAAGTCACTTTCCTGCGTAGTCGAACTGGCGCCGGAAGCCGGCAATTGCTGGGCTTTCCAGCG
TTCGAGATTGTCCTGCAAGAGCGTTACGGGAACGCCGGCAGCCGACAATTCTGTCATCTTTTTCGCCAGTTG
TCCGCGCAGCCACGGATCGTTGCAAGCGGAGTTGTGCGACAGCGTCAGGTACAGCCCCTCGCTGCTCAGCAC
CGGTTCCAGCGCCTCCAGGTCGTCGGCCATGCCCAGCGCCTCGACCTGGGCCTGCCCGGGCAGCGCCTGGTA
GAGGAGGAACTCGCTGCGTTTGAGCATCAGGTCCTGCAAGCCCTGGGTCAGGCTCGGCACCGGCTTCAGGTC
GAGACTGGCCTTGGCGAAGCGGTCGAACTCCTCGCCCAGGCTGCTGCCGGCCAGCACGCTGCCCTTGTGCCC
GATCAGGTCGTCGCGGCCGATGAACGGGAACGCGGCGTCCTTGTTCACCCAGACCACCCCGCTGGTCATCAG
GAACGGCGGATGCACGTAGTCCATGCTGCCGAGCCGTGCCAGGGTCAGGTAGGCCCCGGCGAGCAGGTCGGC
GCGACCGCTGGTCACCTCTTCCTGGGCCTTCTCCCAGGAGCCGCTGTAGAGCACGTCGATGCGCACGCCGAG
CTCCTTGCCCAGGCGCTGCAACAGGTCGGCATTGGCTCCGATCAGGCGCTTCGGATCCTGCGGGTCGCGCCA
CAGGTAGGGTGGGTACTCCGGGTTGCCGGTGGCCACCAGGCGCTCGCAGGAGCCGGCCGCCGCGGCCAGCCC
CGGAACGAACAGCGCCGCCAGCAGGATGCCGGCCAGGCGGCACGGGGAACAGCGAAAGGACATGGATTCAGG
CTCCGCGGTACAGGGATGCGCGCAGCAGTCTGCCACATTTCCGCGCGCGCTCCCGCCCCGCTATTCCGATGG
GTACCAGCGCGGCGTGTAGACCCAGGCTTCGCCGTCGGCACGCGGGAAGCTGCAGGTGGTGGACGAGCCGAT
GATCACCAGGGTGCGCATGTCCACCTGCTCCGCACGCAGCTCGCCCAGGGTGGTGCGCAGCAGGCGCTCACC
GGGCCGCCCGATGTCGCGACCGAGCACCACCAGGGTCTGCGGCGAACGATGGCGGGCGACGATCTCCAGCGC
CCGTCCCAGTTGCCAGGGCCGCGCCCGCGAGATCGGATTGTAGAAAGCCATCGCCAGGTCGGCGGCGCCGGC
CAGGTCCAGGCGCCGCTCGATCACCTCCCAGGGCTTGAGGTTGTCGGACAGCGACAGCAGGCAGAAATCGTG
GCCCAGAGGCGCCCCCGCCCTGGCCGCGGTGGCCAGGGCCGCCGAGACGCCAGGGAAGATCCGCAGCTCGAC
CGCGTCCCAGGCCGGCTCGCCAGCGCCATGCAGGGCTTCCAGCACCGCGGCGGCCATGGCGAACACGCCGGG
GTCGCCGGACGATACCAACACCACCGCCCTGCCGGTCGCCGCCAGTTCGAAGGCATGCCGGGCGCGCTGCAA
TTCCTCGCGGTTGTCGCTGCCATGCAGCACCTGTCCGGCGCGGAAGGGTCCGGCCATGTCGACGTAGGTCTG
GTAGCCGAGGATGTCCTCGGCCTCGTCCAGCGCCCGCCGCGCCGCAGGCACCATCAGCTCGGCGCAGCCGGG
CCCCAGGCCGATCACCGTGAGTCGGCCGCGACGCTGGCCGATGCGGTCCATCGCCAGGGGCGCGGCGGCCAC
CGCCAGCCGGTCGCCGACCTGCTCGGCGGCGGGCAAGGCCTGGCGCAGGCGCGCAGCGGGATCGGTCTGCGG
CAGGAAGCGCAGCGGTACGCCGAGCGCATCGGCGGCGGCCTGCAGGCGCGGATCGGCCATCCGCGCGCTGTC
GGCCAGCAAGCCGCCGAGCGCCGCCGCGGCCAGGCCGGCATCGACCAGCGCCTGGCGCACCGCGTCCGCCGC
CGCGTCGGCAGGTTCGAGCGCCGCCAGCACGCAGCGCGGATGGATCAGCAGTTCCTCGGCCCGCGGCGCACG
CGCCGAGGGCGTCACGTGAATCGCCAGCGCTGCCTCCGGGTCGCGCGGCAAACGGGCCGCGTCGAGCCAGTC
GGCGGCACCCTCGACGCGCACCGGCTGGCCACCGAGCAAATCGGCAACGAAGCGCTTGCCCTGCTCCAGGTC
GGCCAGGACATAACCGGCGGGCGGGTTGAGCACGCAGGTGCCGAAGCGCAGCTCGCCGCTGGTGGTGATCGC
CGGCGCCACGGCCAGCACCTCGCCGATTTCCCGCGCCAGCCGGTTGACCCCGGCCAGCCCGCCGAGCAGCGG
CACCACCGCGCTGCCGTCCTCGGCCAGGGCCAGCACCGGCGGCTCCGCTCCCTTGCGTTGCAACAACGGCGC
CAGGCTGCGAATGACGATGCCGGCGGCGCACAGGGCGACGATCGGGCGGTCGGCGCAATACAGTTCGCGCAG
GGTGTCGCCGAAGTCCGTATAGGAACGGTCGGCCTCGACCCGCCCGGCGAGCCCGTGGACCAGCGCCCCGGG
ATAGCGCGCCTGGACCCGCCGCGCGGTATCCAGCGCGCCCTGGCCGAGGATGACGATGGCCGGAACCTGCTG
GGCGTCACTCACCGCCGGCCCCTCCCTGCCACTTGTCGCCGGGGACGACGATCAGCGAGAAGTACGGCGAGG
CCATCGGCTCCACCCGTTCCAACGGCACGATCCGCTGGTTGGCCATGGTCGCCCGCTCGACGTACAGCGCGC
GGCGCTCGAGGCCAAGCTCGACCAGCACGCGGCGGACCTTGTCGAAATTGCGGCCGAGCTTCATCACCACCG
CCGCGTCGGCATCCGCCAGGCGCCGGCGCAACTCCTCCTCGGGCAGCACTCCGGAGAGCACCGAGAGGCTCT
GGTTGCGGTACACCAGCGGCGCACCGAGCACCGCCGCGCCGCCGAGCATCGAGCAAACGCCAGGCACCACTT
CGCTTTCGTAGCGCGTCGCCAGGCGGTCGTGGAGGTACATGTAGGAACCGTAGAAGAACGGGTCGCCCTCGC
AGATCACCGCCACGTCGCGGCCGGCGTCCAGGTGCGCGGCCAGCTGTTCGGCGGCGGTGTCGTAGAAATCGC
TGA

Translation:

MPGISRSPPVACADVSGSCPARRAGPCSSASAPWTRRGVRPARPARPTGAPSCRTPRSSRSAPRRTCPGPVS
ARPRRRWHPPPWPAPAPVRSGASAPAEPGRCSHNRSGSARRGLRPSSIECSQVTFLRSRTGAGSRQLLGFPA
FEIVLQERYGNAGSRQFCHLFRQLSAQPRIVASGVVRQRQVQPLAAQHRFQRLQVVGHAQRLDLGLPGQRLV
EEELAAFEHQVLQALGQARHRLQVETGLGEAVELLAQAAAGQHAALVPDQVVAADERERGVLVHPDHPAGHQ
ERRMHVVHAAEPCQGQVGPGEQVGATAGHLFLGLLPGAAVEHVDAHAELLAQALQQVGIGSDQALRILRVAP
QVGWVLRVAGGHQALAGAGRRGQPRNEQRRQQDAGQAARGTAKGHGFRLRGTGMRAAVCHISARAPAPLFRW
VPARRVDPGFAVGTREAAGGGRADDHQGAHVHLLRTQLAQGGAQQALTGPPDVATEHHQGLRRTMAGDDLQR
PSQLPGPRPRDRIVESHRQVGGAGQVQAPLDHLPGLEVVGQRQQAEIVAQRRPRPGRGGQGRRDAREDPQLD
RVPGRLASAMQGFQHRGGHGEHAGVAGRYQHHRPAGRRQFEGMPGALQFLAVVAAMQHLSGAEGSGHVDVGL
VAEDVLGLVQRPPRRRHHQLGAAGPQADHRESAATLADAVHRQGRGGHRQPVADLLGGGQGLAQARSGIGLR
QEAQRYAERIGGGLQARIGHPRAVGQQAAERRRGQAGIDQRLAHRVRRRVGRFERRQHAARMDQQFLGPRRT
RRGRHVNRQRCLRVARQTGRVEPVGGTLDAHRLATEQIGNEALALLQVGQDITGGRVEHAGAEAQLAAGGDR
RRHGQHLADFPRQPVDPGQPAEQRHHRAAVLGQGQHRRLRSLALQQRRQAANDDAGGAQGDDRAVGAIQFAQ
GVAEVRIGTVGLDPPGEPVDQRPGIARLDPPRGIQRALAEDDDGRNLLGVTHRRPLPATCRRGRRSARSTAR
PSAPPVPTARSAGWPWSPARRTARGARGQARPARGGPCRNCGRASSPPPRRHPPGAGATPPRAALRRAPRGS
GCGTPAAHRAPPRRRASSKRQAPLRFRSASPGGRGGTCRNRRRTGRPRRSPPRRGRRPGARPAVRRRCRRNR
*

AnnotationID:6202 GeneID:6201

AnnotatorUID: diggins

Modification Date/Time: 2004-12-01 08:08:04

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:16000

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29519

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36121

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6201_cdd.html

URL:

GC ORFID: `49203`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2639966`	Stop: `2643424`
Length: `3459`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCCCGGCATCAGTCGGTCTCCCCCAGTTGCTTGCGCAGACGTTTCAGGCTCTTGTCCAGCTCGCCGAGCT GGTCCTTGCTCTTCTGCGTCAGCACCTTGGACTCGGCGAGGCGTGCGTCCAGCTCGGCCTGCTCGGCCAACA GGCGCGCCTTCTTGTAGGACTCCGCGGTCATCGCGATCTGCGCCGCGGCGTACTTGTCCTGGGCCAGTTTCA GCTCGGCCACGTCGTCGGTGGCACCCACCGCCTTGGCCTGCTCCAGCGCCTGTTCGGTCAGGCGCATCTGCT CCAGCGGAGCCGGGTCGTTGCTCGCACAACCGCTCAGGGTCAGCGCGGCGAGGCCTGCGGCCATCATCCATC GAATGCTCACAAGTCACTTTCCTGCGTAGTCGAACTGGCGCCGGAAGCCGGCAATTGCTGGGCTTTCCAGCG TTCGAGATTGTCCTGCAAGAGCGTTACGGGAACGCCGGCAGCCGACAATTCTGTCATCTTTTTCGCCAGTTG TCCGCGCAGCCACGGATCGTTGCAAGCGGAGTTGTGCGACAGCGTCAGGTACAGCCCCTCGCTGCTCAGCAC CGGTTCCAGCGCCTCCAGGTCGTCGGCCATGCCCAGCGCCTCGACCTGGGCCTGCCCGGGCAGCGCCTGGTA GAGGAGGAACTCGCTGCGTTTGAGCATCAGGTCCTGCAAGCCCTGGGTCAGGCTCGGCACCGGCTTCAGGTC GAGACTGGCCTTGGCGAAGCGGTCGAACTCCTCGCCCAGGCTGCTGCCGGCCAGCACGCTGCCCTTGTGCCC GATCAGGTCGTCGCGGCCGATGAACGGGAACGCGGCGTCCTTGTTCACCCAGACCACCCCGCTGGTCATCAG GAACGGCGGATGCACGTAGTCCATGCTGCCGAGCCGTGCCAGGGTCAGGTAGGCCCCGGCGAGCAGGTCGGC GCGACCGCTGGTCACCTCTTCCTGGGCCTTCTCCCAGGAGCCGCTGTAGAGCACGTCGATGCGCACGCCGAG CTCCTTGCCCAGGCGCTGCAACAGGTCGGCATTGGCTCCGATCAGGCGCTTCGGATCCTGCGGGTCGCGCCA CAGGTAGGGTGGGTACTCCGGGTTGCCGGTGGCCACCAGGCGCTCGCAGGAGCCGGCCGCCGCGGCCAGCCC CGGAACGAACAGCGCCGCCAGCAGGATGCCGGCCAGGCGGCACGGGGAACAGCGAAAGGACATGGATTCAGG CTCCGCGGTACAGGGATGCGCGCAGCAGTCTGCCACATTTCCGCGCGCGCTCCCGCCCCGCTATTCCGATGG GTACCAGCGCGGCGTGTAGACCCAGGCTTCGCCGTCGGCACGCGGGAAGCTGCAGGTGGTGGACGAGCCGAT GATCACCAGGGTGCGCATGTCCACCTGCTCCGCACGCAGCTCGCCCAGGGTGGTGCGCAGCAGGCGCTCACC GGGCCGCCCGATGTCGCGACCGAGCACCACCAGGGTCTGCGGCGAACGATGGCGGGCGACGATCTCCAGCGC CCGTCCCAGTTGCCAGGGCCGCGCCCGCGAGATCGGATTGTAGAAAGCCATCGCCAGGTCGGCGGCGCCGGC CAGGTCCAGGCGCCGCTCGATCACCTCCCAGGGCTTGAGGTTGTCGGACAGCGACAGCAGGCAGAAATCGTG GCCCAGAGGCGCCCCCGCCCTGGCCGCGGTGGCCAGGGCCGCCGAGACGCCAGGGAAGATCCGCAGCTCGAC CGCGTCCCAGGCCGGCTCGCCAGCGCCATGCAGGGCTTCCAGCACCGCGGCGGCCATGGCGAACACGCCGGG GTCGCCGGACGATACCAACACCACCGCCCTGCCGGTCGCCGCCAGTTCGAAGGCATGCCGGGCGCGCTGCAA TTCCTCGCGGTTGTCGCTGCCATGCAGCACCTGTCCGGCGCGGAAGGGTCCGGCCATGTCGACGTAGGTCTG GTAGCCGAGGATGTCCTCGGCCTCGTCCAGCGCCCGCCGCGCCGCAGGCACCATCAGCTCGGCGCAGCCGGG CCCCAGGCCGATCACCGTGAGTCGGCCGCGACGCTGGCCGATGCGGTCCATCGCCAGGGGCGCGGCGGCCAC CGCCAGCCGGTCGCCGACCTGCTCGGCGGCGGGCAAGGCCTGGCGCAGGCGCGCAGCGGGATCGGTCTGCGG CAGGAAGCGCAGCGGTACGCCGAGCGCATCGGCGGCGGCCTGCAGGCGCGGATCGGCCATCCGCGCGCTGTC GGCCAGCAAGCCGCCGAGCGCCGCCGCGGCCAGGCCGGCATCGACCAGCGCCTGGCGCACCGCGTCCGCCGC CGCGTCGGCAGGTTCGAGCGCCGCCAGCACGCAGCGCGGATGGATCAGCAGTTCCTCGGCCCGCGGCGCACG CGCCGAGGGCGTCACGTGAATCGCCAGCGCTGCCTCCGGGTCGCGCGGCAAACGGGCCGCGTCGAGCCAGTC GGCGGCACCCTCGACGCGCACCGGCTGGCCACCGAGCAAATCGGCAACGAAGCGCTTGCCCTGCTCCAGGTC GGCCAGGACATAACCGGCGGGCGGGTTGAGCACGCAGGTGCCGAAGCGCAGCTCGCCGCTGGTGGTGATCGC CGGCGCCACGGCCAGCACCTCGCCGATTTCCCGCGCCAGCCGGTTGACCCCGGCCAGCCCGCCGAGCAGCGG CACCACCGCGCTGCCGTCCTCGGCCAGGGCCAGCACCGGCGGCTCCGCTCCCTTGCGTTGCAACAACGGCGC CAGGCTGCGAATGACGATGCCGGCGGCGCACAGGGCGACGATCGGGCGGTCGGCGCAATACAGTTCGCGCAG GGTGTCGCCGAAGTCCGTATAGGAACGGTCGGCCTCGACCCGCCCGGCGAGCCCGTGGACCAGCGCCCCGGG ATAGCGCGCCTGGACCCGCCGCGCGGTATCCAGCGCGCCCTGGCCGAGGATGACGATGGCCGGAACCTGCTG GGCGTCACTCACCGCCGGCCCCTCCCTGCCACTTGTCGCCGGGGACGACGATCAGCGAGAAGTACGGCGAGG CCATCGGCTCCACCCGTTCCAACGGCACGATCCGCTGGTTGGCCATGGTCGCCCGCTCGACGTACAGCGCGC GGCGCTCGAGGCCAAGCTCGACCAGCACGCGGCGGACCTTGTCGAAATTGCGGCCGAGCTTCATCACCACCG CCGCGTCGGCATCCGCCAGGCGCCGGCGCAACTCCTCCTCGGGCAGCACTCCGGAGAGCACCGAGAGGCTCT GGTTGCGGTACACCAGCGGCGCACCGAGCACCGCCGCGCCGCCGAGCATCGAGCAAACGCCAGGCACCACTT CGCTTTCGTAGCGCGTCGCCAGGCGGTCGTGGAGGTACATGTAGGAACCGTAGAAGAACGGGTCGCCCTCGC AGATCACCGCCACGTCGCGGCCGGCGTCCAGGTGCGCGGCCAGCTGTTCGGCGGCGGTGTCGTAGAAATCGC TGA