ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6198

TrivialName: PA14_26680

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_26680

PAO1 Ortholog Locus:

Sequence Length: 2469

Protein Length: 822

Start: 2323512

Stop: 2325980

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAN68278.1|AE016462_4 (AE016784) hypothetical protein [Pseudomonas putida KT2440] Identities = 52/183 (28%), Positives = 71/183 (38%), Gaps = 28/183 (15%)

Sequence:

GTGCTTCAGGACGATCTTCCACGGCGCCCCGGCGGCGCTGCGCCAGCCGGCCAGGCCGGGCTGGTGCGCACT
GGCCTCGGCGCCGGCCTGGTAGAGCAGGGCGGCGGCCAGGGCCAGTTCCTCGGCGCCCGGCTGGCGCGGTTG
CAGGCTGGGGTCTTCGGCGAAGCGTTCGCCGATGAAGGCGGTGGTCGCCTCGCCGGCGGCGAAGTCCGGATG
CGCCAGGAGGTTGGCGAGGAACCGCTGGTTGCCGTCGACCCCCAGCAGCACGCAGCGCTCCAGCGCGCGGAT
CAGCTTGCGCCGGGCTTCGTCGCGGGTCGCCCCGTAGGCGATCAGCTTGGCCAGCATCGGGTCGTAGAAGGG
CGTCACCGCCTGCCCCTCGACCAGGCCATGGTCGATGCGTACGCCGGGCAGCAGTTCCGGGTCCCAGCGCAG
CACCGTGCCGGTCTGCGGCAGGAAGCCGCGACCGGCGTCCTCGGCGTAGAGGCGGACCTCGATGGCATGCCC
GCGCAGTTCCACCTGCTCCTGCCGCAGCGGCAGCGGATGGCCCTCGGCGATGCGGATCTGCCAGGCCACCAG
GTCCTGGCCGGTGACCAGTTCGGTGACCGGGTGTTCGACCTGCAGGCGGGTATTCATCTCCAGGAAGTAGAA
GCGACCATCCTCGCCGAGAAGAAACTCGACGGTGCCGGCGCCCACGTAGTTGACCGAGGCCGCGGCCTTCAC
CGCCGCCTCGCCCATGGCGCGACGCAGGTCGGCATCGAGCACCGGGCAGGGGGCTTCCTCGATGACCTTCTG
GTGGCGGCGCTGCACCGAGCAGTCGCGTTCGCCGAGGTAGAGCAGGTTGCCGTGGCGGTCGCCGAACACCTG
GATCTCCACATGGCGCGGGCGCAGCACGGCCCTCTCCAGGATCAGCTCGGCGCTGCCGAAGGCGCCCAGCGC
TTCCGAGCGCGCAGTGCGCAACTGTTCCAGCAGTTGGCCGGGTTCCTCCACCAGGCGCATGCCGCGGCCGCC
GCCGCCGGCGCTGGCCTTGATCATCAGCGGGTAGCCGATGCGTTCGGCCTCGCGCCGCAGGGTCGCGTCGTC
CTGTTCGGCGCCTTCGTAGCCGGGGATGCACGGCACCCCGGCGGCGAGCATGGCGATCTTCGACAGGCGCTT
GCTGCCCATCAGGTGGATGGCTTCCGCATCCGGGCCGATGAAGACGATCCCGGCGGCTTCGCAGGCACGGGC
GAACTCGGCGTTCTCGGAGAGGAAGCCGTAGCCGGGGTGGATCGCCTCGGCGCCGCTGCGACGGGCGGCGTC
GAGGATCGCCTCGAGGTTCAGGTAGGACTGCGCCACCGCTGCCGGGCCGATGCACACGGCCTCGTCGGCCAG
TTGCACATGGCGGGCGTCGGCGTCCGCCTCGCTGTACACGGCGACGCTGCGGTAGCCCAGTTCATGGGCGGT
GCGCAGCACCCGGCAGGCGATTTCACCGCGGTTGGCGACGAGGATCTTGTTGAAGCTGGGCATGTCGTTCGG
CTCCTGGAGGCTGTTGCCCTGTTTCGCGGTCGTGGCTCACTGGGCCCAGACCGGCTTGCGTTTcTGTACGAA
GGCCAGGGTGCCTTCGCTGCCTTCGGCGCCGCCCACCGCTTCGGCGAACTGGCGCGCCGCATCGTCCAGCAG
GGCGCCGAGTTCGCCGCTTTCGCTGGCCAGCAGCAGGGCCTTGGTGGCGGCGTTGGCGTTCGGCGCGCAGCG
GCGCAGTtgCTCGAGGGTTTCCTCCAGGCGCTGTTCGAGGGCATCGGCGTCGGcctCGCAGAAATGCACCAG
GCCCAGGCGCAGCGCCTCGCGGCCGTCGAAGCGGGCGGCGGTGAGGGCCAGGCGGCGGGCCTGGGTCAGGCC
GATGCGGCGGACCACGAAAGGCGCGATCTGCGCCGGGAGAATGCCGAGGCTGGTTTCCGGCAGGCCGAACTG
CGCATCGGCGGCGGCGATCGCTACGTCCGACACGCAGGCCAGGCCGAAACCGCCGCCGAGCACCGCGCCTTC
CACCAGCGCCACCAGCAGTTGCGGGGCGGCCTGGGCTTCCTCCAGCAGGCTGCCGAAGGCGCGGTTCAGCGT
GCGGTAGGCTTCCGCCCCGGCGGCGCGGGCACCGGCCATGTCCTTGATGTCGCCGCCGGCGCAGAAGTGCCC
GCCGGCGCCGCGCAGCACCAGCGCCCGCACGCTACGGTCGTCGCGCACGGCGGCGAGCACCGCGCGCAGTTC
GCCGACCATCGCCAGGCTCATGGCGTTGCGGCTTTGCGGGCGGTTCAGGGTGATCCGCAGGACGCCCTCGAC
GGGTTCCAGCAGCAGGGTCTCGCAATGCGGCAGGCTCATGCCGGTTTCCTCCTGGAACGTCAGCCTTTCTTC
TTGCCCGGCAGGATGCCCATCAGCTTGCAGATGATGCCGAGCATGATCTCGTCGGCACCGCCGCCGATGGAT
ACCAGGCGGGTGTCGCGGTAG

Translation:

MLQDDLPRRPGGAAPAGQAGLVRTGLGAGLVEQGGGQGQFLGARLARLQAGVFGEAFADEGGGRLAGGEVRM
RQEVGEEPLVAVDPQQHAALQRADQLAPGFVAGRPVGDQLGQHRVVEGRHRLPLDQAMVDAYAGQQFRVPAQ
HRAGLRQEAATGVLGVEADLDGMPAQFHLLLPQRQRMALGDADLPGHQVLAGDQFGDRVFDLQAGIHLQEVE
ATILAEKKLDGAGAHVVDRGRGLHRRLAHGATQVGIEHRAGGFLDDLLVAALHRAVAFAEVEQVAVAVAEHL
DLHMARAQHGPLQDQLGAAEGAQRFRARSAQLFQQLAGFLHQAHAAAAAAGAGLDHQRVADAFGLAPQGRVV
LFGAFVAGDARHPGGEHGDLRQALAAHQVDGFRIRADEDDPGGFAGTGELGVLGEEAVAGVDRLGAAATGGV
EDRLEVQVGLRHRCRADAHGLVGQLHMAGVGVRLAVHGDAAVAQFMGGAQHPAGDFTAVGDEDLVEAGHVVR
LLEAVALFRGRGSLGPDRLAFLYEGQGAFAAFGAAHRFGELARRIVQQGAEFAAFAGQQQGLGGGVGVRRAA
AQLLEGFLQALFEGIGVGLAEMHQAQAQRLAAVEAGGGEGQAAGLGQADAADHERRDLRRENAEAGFRQAEL
RIGGGDRYVRHAGQAETAAEHRAFHQRHQQLRGGLGFLQQAAEGAVQRAVGFRPGGAGTGHVLDVAAGAEVP
AGAAQHQRPHATVVAHGGEHRAQFADHRQAHGVAALRAVQGDPQDALDGFQQQGLAMRQAHAGFLLERQPFF
LPGRMPISLQMMPSMISSAPPPMDTRRVSR*

AnnotationID:6199 GeneID:6198

AnnotatorUID: diggins

Modification Date/Time: 2004-12-01 10:10:49

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:15994

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29512

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36133

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6198_cdd.html

URL:

GC ORFID: `49200`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2630414`	Stop: `2627946`
Length: `2469`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGCTTCAGGACGATCTTCCACGGCGCCCCGGCGGCGCTGCGCCAGCCGGCCAGGCCGGGCTGGTGCGCACT GGCCTCGGCGCCGGCCTGGTAGAGCAGGGCGGCGGCCAGGGCCAGTTCCTCGGCGCCCGGCTGGCGCGGTTG CAGGCTGGGGTCTTCGGCGAAGCGTTCGCCGATGAAGGCGGTGGTCGCCTCGCCGGCGGCGAAGTCCGGATG CGCCAGGAGGTTGGCGAGGAACCGCTGGTTGCCGTCGACCCCCAGCAGCACGCAGCGCTCCAGCGCGCGGAT CAGCTTGCGCCGGGCTTCGTCGCGGGTCGCCCCGTAGGCGATCAGCTTGGCCAGCATCGGGTCGTAGAAGGG CGTCACCGCCTGCCCCTCGACCAGGCCATGGTCGATGCGTACGCCGGGCAGCAGTTCCGGGTCCCAGCGCAG CACCGTGCCGGTCTGCGGCAGGAAGCCGCGACCGGCGTCCTCGGCGTAGAGGCGGACCTCGATGGCATGCCC GCGCAGTTCCACCTGCTCCTGCCGCAGCGGCAGCGGATGGCCCTCGGCGATGCGGATCTGCCAGGCCACCAG GTCCTGGCCGGTGACCAGTTCGGTGACCGGGTGTTCGACCTGCAGGCGGGTATTCATCTCCAGGAAGTAGAA GCGACCATCCTCGCCGAGAAGAAACTCGACGGTGCCGGCGCCCACGTAGTTGACCGAGGCCGCGGCCTTCAC CGCCGCCTCGCCCATGGCGCGACGCAGGTCGGCATCGAGCACCGGGCAGGGGGCTTCCTCGATGACCTTCTG GTGGCGGCGCTGCACCGAGCAGTCGCGTTCGCCGAGGTAGAGCAGGTTGCCGTGGCGGTCGCCGAACACCTG GATCTCCACATGGCGCGGGCGCAGCACGGCCCTCTCCAGGATCAGCTCGGCGCTGCCGAAGGCGCCCAGCGC TTCCGAGCGCGCAGTGCGCAACTGTTCCAGCAGTTGGCCGGGTTCCTCCACCAGGCGCATGCCGCGGCCGCC GCCGCCGGCGCTGGCCTTGATCATCAGCGGGTAGCCGATGCGTTCGGCCTCGCGCCGCAGGGTCGCGTCGTC CTGTTCGGCGCCTTCGTAGCCGGGGATGCACGGCACCCCGGCGGCGAGCATGGCGATCTTCGACAGGCGCTT GCTGCCCATCAGGTGGATGGCTTCCGCATCCGGGCCGATGAAGACGATCCCGGCGGCTTCGCAGGCACGGGC GAACTCGGCGTTCTCGGAGAGGAAGCCGTAGCCGGGGTGGATCGCCTCGGCGCCGCTGCGACGGGCGGCGTC GAGGATCGCCTCGAGGTTCAGGTAGGACTGCGCCACCGCTGCCGGGCCGATGCACACGGCCTCGTCGGCCAG TTGCACATGGCGGGCGTCGGCGTCCGCCTCGCTGTACACGGCGACGCTGCGGTAGCCCAGTTCATGGGCGGT GCGCAGCACCCGGCAGGCGATTTCACCGCGGTTGGCGACGAGGATCTTGTTGAAGCTGGGCATGTCGTTCGG CTCCTGGAGGCTGTTGCCCTGTTTCGCGGTCGTGGCTCACTGGGCCCAGACCGGCTTGCGTTTcTGTACGAA GGCCAGGGTGCCTTCGCTGCCTTCGGCGCCGCCCACCGCTTCGGCGAACTGGCGCGCCGCATCGTCCAGCAG GGCGCCGAGTTCGCCGCTTTCGCTGGCCAGCAGCAGGGCCTTGGTGGCGGCGTTGGCGTTCGGCGCGCAGCG GCGCAGTtgCTCGAGGGTTTCCTCCAGGCGCTGTTCGAGGGCATCGGCGTCGGcctCGCAGAAATGCACCAG GCCCAGGCGCAGCGCCTCGCGGCCGTCGAAGCGGGCGGCGGTGAGGGCCAGGCGGCGGGCCTGGGTCAGGCC GATGCGGCGGACCACGAAAGGCGCGATCTGCGCCGGGAGAATGCCGAGGCTGGTTTCCGGCAGGCCGAACTG CGCATCGGCGGCGGCGATCGCTACGTCCGACACGCAGGCCAGGCCGAAACCGCCGCCGAGCACCGCGCCTTC CACCAGCGCCACCAGCAGTTGCGGGGCGGCCTGGGCTTCCTCCAGCAGGCTGCCGAAGGCGCGGTTCAGCGT GCGGTAGGCTTCCGCCCCGGCGGCGCGGGCACCGGCCATGTCCTTGATGTCGCCGCCGGCGCAGAAGTGCCC GCCGGCGCCGCGCAGCACCAGCGCCCGCACGCTACGGTCGTCGCGCACGGCGGCGAGCACCGCGCGCAGTTC GCCGACCATCGCCAGGCTCATGGCGTTGCGGCTTTGCGGGCGGTTCAGGGTGATCCGCAGGACGCCCTCGAC GGGTTCCAGCAGCAGGGTCTCGCAATGCGGCAGGCTCATGCCGGTTTCCTCCTGGAACGTCAGCCTTTCTTC TTGCCCGGCAGGATGCCCATCAGCTTGCAGATGATGCCGAGCATGATCTCGTCGGCACCGCCGCCGATGGAT ACCAGGCGGGTGTCGCGGTAG