ViewGene

Locus Name:
GeneID:
Location:

GeneID:6196
TrivialName: PA14_26740
AnnotatorUID: diggins
Modification Date/Time:2006-04-23 10:10:30
LocusName:PA14_26740
PAO1 Ortholog Locus:
Sequence Length:1854
Protein Length:617
Start: 2329679
Stop: 2331532
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK25017.1| (AE005968) hypothetical protein [Caulobacter crescentus CB15]
Identities = 86/294 (29%), Positives = 116/294 (39%), Gaps = 40/294 (13%)
Sequence:
GTGGTTGCAGCGGAACGCCGCATTCGTCGTTCCTGGTCGTGGTTATCTGCCCTGCGTTTCCAGCGCGTCGGC
GAGCGCCTGCGGCACCGCCACCGGGAACTCCAGCAACTGCTGGGCGAAGGCCTTGCCCTGCGGGTCGATGCG
CAGGCTGGCGACGCCGCCGCCGCCGAGGGCGTTCTCCAGCAGGAAGTTCAGGCTGTGGCTGCCCGGCAGGTA
CCAGCGGCCGACCCGGCCGGTCTGCGGGTCGAGCACATGCTGCATCCAGTCCACCACCGCGCCTTCCTCCAG
CGCCTCGGCGATCCACGGCAGGTACTCCGGACGCCGCGCCATGACCCCGATGTTGCTGTGGTTGCCCTTGTC
GCCGGAGCGTGCCACCGCCAGCTTCACCAGCGGCACGCTGGCGCTGGCGGGCTGCTCCGGGCGTGGCGGCTG
GCGCGCCTCGGCCAATCGTGCCGGGTCGAAGGCTTCGAGGACCGGCAGTTCCAGCGGATGGCGCTGGCCGTC
GATCTCCACGCTCAACGCGCATTGCGCCTTGTCGATCAGGAAAGAGAACAGGCGGATCACCGGATACACCGT
CGGCCGGCCGCCGACGATGCCGGTCAGGCCGGGCGCCATCCCGGTGGCGGCCTGGGCGATCTCGCGGGAGAA
CAGCACCAGGGCTTCCTTGCGCGGATGCCGGACGGCCAGCTTGACCACCACTTCGCGGCTGTCCTGCCGTCG
CCCATGGGGACCATAGGTGGCTTCGCTGCCGAGCAGTTCGACATTGACCTCGCGGTAGGGCTCCCAGCCGCG
CTCGGCGAAGATTTCCTCGGTCCTGGCGATGATCGCCTGGCTGACCCGCTCGGCCTTCTTCAGCGCATCGAT
GCCGGCGATCAGGCAACTGGCGGTGCAGCGGAAACCGTCCGGATAGGTGGCGCTGACCTTGTACCGGTCGGT
GGGCGGCAGGCCGCGCGCGCCTTCCACCGCGACCCGGTCGGGACCGGCCTGGCGCAGGCGCACCTCGGTGAA
GTCGCAGACCACGTCGGGCAGCAGGTAGGCGCGTGGGTCGCCGATCTCGTAGAGCATCTGTTCGCCGACGCT
CAGTTCGCTGACCAGGCCACCGGTGCCGGGCGCCTTGGTCACTACGAAGCGCCCGTCGGCCTCGACCTCGAC
GATGGGGAAGCCGATGTGCTCGTAGTCCGGCACCTGCTCCCAGTCGGTGAAATTGCCGCCGGTGCATTGCGC
GCCGCATTCGACGATGTGCCCGGCGAGGGCGGCCTGGGCCAGTCGGTCGTAGTCGTCCCAGGCCCAGCCGAA
CTCGTGCACCAGGGCGGCGCTGACCACCGCGCTGTCGACCACCCGGCCGGTGATCACGATGTCCGCGCCCAG
GCGCAGGGCCTCGACGATGCCCGGCGCGCCGAGGTAGGCGTTGAGCGAGACGCACATCGGCGGGAAAGGCGC
GTCGCTGAACATCTCGCGGATGCCGGACTTGGCCAGTTCGGCCTGGCGCGCTTGCAGGTTGTCGCCATGGAG
CACGGCGATCTTCAACTGCACCCCGGCCTTCTCGCAGGCCGCGGCGAGGGTGGCGGCACAGGCCTGCGGATT
GATCCCGCCAGCGTTGCTGATGACGCGGATCTTCTTCTCGGCTATCTCGCCCAGCAGCGGTGCGAGGACCTC
GACGAAATCGGTGGCGTAGCCGGCGTCCGGCTGTTTCAGGCGGGCGCCGGCCATGATCGACATGGTGATCTC
GGCCAGGTAGTCGAACACCAGGTAGTCCAGCGGCGCGCCGCGCACCAGCTGGGCGGCCGCGGTGCAGGTGTC
GCCCCAGAAGGCCGAGGCGCAGCCGATGCGTACGGTCTTTTGCATTGTTCTTGA
Translation:
MVAAERRIRRSWSWLSALRFQRVGERLRHRHRELQQLLGEGLALRVDAQAGDAAAAEGVLQQEVQAVAARQV
PAADPAGLRVEHMLHPVHHRAFLQRLGDPRQVLRTPRHDPDVAVVALVAGACHRQLHQRHAGAGGLLRAWRL
ARLGQSCRVEGFEDRQFQRMALAVDLHAQRALRLVDQEREQADHRIHRRPAADDAGQAGRHPGGGLGDLAGE
QHQGFLARMPDGQLDHHFAAVLPSPMGTIGGFAAEQFDIDLAVGLPAALGEDFLGPGDDRLADPLGLLQRID
AGDQATGGAAETVRIGGADLVPVGGRQAARAFHRDPVGTGLAQAHLGEVADHVGQQVGAWVADLVEHLFADA
QFADQATGAGRLGHYEAPVGLDLDDGEADVLVVRHLLPVGEIAAGALRAAFDDVPGEGGLGQSVVVVPGPAE
LVHQGGADHRAVDHPAGDHDVRAQAQGLDDARRAEVGVERDAHRRERRVAEHLADAGLGQFGLARLQVVAME
HGDLQLHPGLLAGRGEGGGTGLRIDPASVADDADLLLGYLAQQRCEDLDEIGGVAGVRLFQAGAGHDRHGDL
GQVVEHQVVQRRAAHQLGGRGAGVAPEGRGAADAYGLLHCS*
AnnotationID:6197GeneID:6196
AnnotatorUID: diggins
Modification Date/Time: 2006-04-23 10:10:51
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits at any threshold.
Genomic Context:
Comment:
ReferenceID:15990
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29508
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49198How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2624247Stop: 2622394
Length: 1854
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGGTTGCAGCGGAACGCCGCATTCGTCGTTCCTGGTCGTGGTTATCTGCCCTGCGTTTCCAGCGCGTCGGC
GAGCGCCTGCGGCACCGCCACCGGGAACTCCAGCAACTGCTGGGCGAAGGCCTTGCCCTGCGGGTCGATGCG
CAGGCTGGCGACGCCGCCGCCGCCGAGGGCGTTCTCCAGCAGGAAGTTCAGGCTGTGGCTGCCCGGCAGGTA
CCAGCGGCCGACCCGGCCGGTCTGCGGGTCGAGCACATGCTGCATCCAGTCCACCACCGCGCCTTCCTCCAG
CGCCTCGGCGATCCACGGCAGGTACTCCGGACGCCGCGCCATGACCCCGATGTTGCTGTGGTTGCCCTTGTC
GCCGGAGCGTGCCACCGCCAGCTTCACCAGCGGCACGCTGGCGCTGGCGGGCTGCTCCGGGCGTGGCGGCTG
GCGCGCCTCGGCCAATCGTGCCGGGTCGAAGGCTTCGAGGACCGGCAGTTCCAGCGGATGGCGCTGGCCGTC
GATCTCCACGCTCAACGCGCATTGCGCCTTGTCGATCAGGAAAGAGAACAGGCGGATCACCGGATACACCGT
CGGCCGGCCGCCGACGATGCCGGTCAGGCCGGGCGCCATCCCGGTGGCGGCCTGGGCGATCTCGCGGGAGAA
CAGCACCAGGGCTTCCTTGCGCGGATGCCGGACGGCCAGCTTGACCACCACTTCGCGGCTGTCCTGCCGTCG
CCCATGGGGACCATAGGTGGCTTCGCTGCCGAGCAGTTCGACATTGACCTCGCGGTAGGGCTCCCAGCCGCG
CTCGGCGAAGATTTCCTCGGTCCTGGCGATGATCGCCTGGCTGACCCGCTCGGCCTTCTTCAGCGCATCGAT
GCCGGCGATCAGGCAACTGGCGGTGCAGCGGAAACCGTCCGGATAGGTGGCGCTGACCTTGTACCGGTCGGT
GGGCGGCAGGCCGCGCGCGCCTTCCACCGCGACCCGGTCGGGACCGGCCTGGCGCAGGCGCACCTCGGTGAA
GTCGCAGACCACGTCGGGCAGCAGGTAGGCGCGTGGGTCGCCGATCTCGTAGAGCATCTGTTCGCCGACGCT
CAGTTCGCTGACCAGGCCACCGGTGCCGGGCGCCTTGGTCACTACGAAGCGCCCGTCGGCCTCGACCTCGAC
GATGGGGAAGCCGATGTGCTCGTAGTCCGGCACCTGCTCCCAGTCGGTGAAATTGCCGCCGGTGCATTGCGC
GCCGCATTCGACGATGTGCCCGGCGAGGGCGGCCTGGGCCAGTCGGTCGTAGTCGTCCCAGGCCCAGCCGAA
CTCGTGCACCAGGGCGGCGCTGACCACCGCGCTGTCGACCACCCGGCCGGTGATCACGATGTCCGCGCCCAG
GCGCAGGGCCTCGACGATGCCCGGCGCGCCGAGGTAGGCGTTGAGCGAGACGCACATCGGCGGGAAAGGCGC
GTCGCTGAACATCTCGCGGATGCCGGACTTGGCCAGTTCGGCCTGGCGCGCTTGCAGGTTGTCGCCATGGAG
CACGGCGATCTTCAACTGCACCCCGGCCTTCTCGCAGGCCGCGGCGAGGGTGGCGGCACAGGCCTGCGGATT
GATCCCGCCAGCGTTGCTGATGACGCGGATCTTCTTCTCGGCTATCTCGCCCAGCAGCGGTGCGAGGACCTC
GACGAAATCGGTGGCGTAGCCGGCGTCCGGCTGTTTCAGGCGGGCGCCGGCCATGATCGACATGGTGATCTC
GGCCAGGTAGTCGAACACCAGGTAGTCCAGCGGCGCGCCGCGCACCAGCTGGGCGGCCGCGGTGCAGGTGTC
GCCCCAGAAGGCCGAGGCGCAGCCGATGCGTACGGTCTTTTGCATTGTTCTTGA