ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6195

TrivialName: PA14_26790

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_26790

PAO1 Ortholog Locus:

Sequence Length: 1368

Protein Length: 455

Start: 2333741

Stop: 2335108

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53451.1| (AY032926) putative PHA synthase [Streptomyces aureofaciens] Identities = 140/413 (33%), Positives = 150/413 (36%), Gaps = 82/413 (19%)

Sequence:

TTGCTTAACTGGCGGGTATCCCTTCATTGCCCCGTCCGGGCCTGCCAGCGAGAGGTTGCCGATGTCTCCGAG
CGCGTTGTCCCGTCTGTTGCGCCCGGTGGAACCCCTGACTCCGGCGATGAGCATCAGCGACGTCGCCGACCG
CCTGCTGATGCCGGAGCACCGTGCCTTCCTCTCGCTGCCGGTGGTCGACGACGAGCGCCGGGTCCTCGGCCT
GGTCAGCCGCTACACCCTCCAGGACATCTTCATGCAGCGTTTCGGCCGCGACCTCTGGGGCCGCCATCCGGT
GCGCGACGTCATGAACCGGGCGCCCCTCAGCGTCTCCCTCGGCGCCAGCCTGGAAGAGGCGGCGCAGCAGGT
CACCGGTCGCCTGCAGTATCCGATCACCGAGGACTTCGCCCTGGTCGACGAAGAGGGCCGCTACCGTGGCCT
GGGCACCGTGCTCGACCTGCTGAAGGCCATGGAGGCGCGCATCGCCCAGCGCAACCGGGTGCTGCGCAAGGC
GCTGGTGGACCTCAAGGAGTCCCAGGCGCAACTGGTGCAGTCGGAAAAGATGGCTTCGCTCGGGCAGATGGT
GGCCGGGGTCGCACACGAGCTGAACACGCCGCTCGGCTACGTCGGCAACAACCTGGCGCTGCTGGAGGAGCT
GAGCGATCCCTTGTTGCGCCTGGCCGATGCCCAGGCGGCGCTGGTCGACTGCCTGGGCGACCCGCAGTGCGA
CGAAGCGCGCCTGGCGCAGGCGCTGCAGGCGGCCGACGCGGTACGCCGCGAGGCCGCCGTCGAACAGTTGCG
CGAGGACCTGCGGCAGTTGTTCGTCGATACCCGCTACGGCCTCGGCCAGATCGGCGAGCTGGTTTCCGGGCT
CAAGGACTTCGCCCGCCTGGACCGCGCCTTCAGCGAGGAGGTCGACCTCAACGACTGCGTGCGCAACGCCTT
GCTGATCGCCCGCACCGCCATCAAGGACAAGGCCGAGATCAGCAGCCAGCTCGGCGAGCTGCCGCTTATCGC
CTGCGCGCCGTCGCAGATCAACCAGGTGCTGCTGAACCTGCTGACCAACGCCGCGCAGGCCATGGAGCGTTT
CGGCCGCATCCTGCTGAAGAGCTGGGCCGACGAGCGCCAGGTGTTCCTCTCCGTGCAGGACAACGGCAAGGG
CATGCCCGCCGAGGTCCTCGGGCGGATCTTCGACCCGTTCTTCACCACCAAGCCGGTGGGGCAGGGCACCGG
GCTCGGCCTGTCGATCAGCTACAAGATCATCCAGCAACATGGCGGGACCATCCGCGTGGCCTCCGAACCGGG
CCGCGGAACCCGCTTCCTCATCAGCCTGCCGCGAGAGCAGGCCCGCGAACTGAAACGGAGCGCCTGACATGA

Translation:

MLNWRVSLHCPVRACQREVADVSERVVPSVAPGGTPDSGDEHQRRRRPPADAGAPCLPLAAGGRRRAPGPRP
GQPLHPPGHLHAAFRPRPLGPPSGARRHEPGAPQRLPRRQPGRGGAAGHRSPAVSDHRGLRPGRRRGPLPWP
GHRARPAEGHGGAHRPAQPGAAQGAGGPQGVPGATGAVGKDGFARADGGRGRTRAEHAARLRRQQPGAAGGA
ERSLVAPGRCPGGAGRLPGRPAVRRSAPGAGAAGGRRGTPRGRRRTVARGPAAVVRRYPLRPRPDRRAGFRA
QGLRPPGPRLQRGGRPQRLRAQRLADRPHRHQGQGRDQQPARRAAAYRLRAVADQPGAAEPADQRRAGHGAF
RPHPAEELGRRAPGVPLRAGQRQGHARRGPRADLRPVLHHQAGGAGHRARPVDQLQDHPATWRDHPRGLRTG
PRNPLPHQPAARAGPRTETERLT*

AnnotationID:6196 GeneID:6195

AnnotatorUID: diggins

Modification Date/Time: 2004-12-02 08:08:27

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:15988

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29507

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36164

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6195_cdd.html

URL:

GC ORFID: `49197`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2620185`	Stop: `2618818`
Length: `1368`
Start Codon: `TTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCTTAACTGGCGGGTATCCCTTCATTGCCCCGTCCGGGCCTGCCAGCGAGAGGTTGCCGATGTCTCCGAG CGCGTTGTCCCGTCTGTTGCGCCCGGTGGAACCCCTGACTCCGGCGATGAGCATCAGCGACGTCGCCGACCG CCTGCTGATGCCGGAGCACCGTGCCTTCCTCTCGCTGCCGGTGGTCGACGACGAGCGCCGGGTCCTCGGCCT GGTCAGCCGCTACACCCTCCAGGACATCTTCATGCAGCGTTTCGGCCGCGACCTCTGGGGCCGCCATCCGGT GCGCGACGTCATGAACCGGGCGCCCCTCAGCGTCTCCCTCGGCGCCAGCCTGGAAGAGGCGGCGCAGCAGGT CACCGGTCGCCTGCAGTATCCGATCACCGAGGACTTCGCCCTGGTCGACGAAGAGGGCCGCTACCGTGGCCT GGGCACCGTGCTCGACCTGCTGAAGGCCATGGAGGCGCGCATCGCCCAGCGCAACCGGGTGCTGCGCAAGGC GCTGGTGGACCTCAAGGAGTCCCAGGCGCAACTGGTGCAGTCGGAAAAGATGGCTTCGCTCGGGCAGATGGT GGCCGGGGTCGCACACGAGCTGAACACGCCGCTCGGCTACGTCGGCAACAACCTGGCGCTGCTGGAGGAGCT GAGCGATCCCTTGTTGCGCCTGGCCGATGCCCAGGCGGCGCTGGTCGACTGCCTGGGCGACCCGCAGTGCGA CGAAGCGCGCCTGGCGCAGGCGCTGCAGGCGGCCGACGCGGTACGCCGCGAGGCCGCCGTCGAACAGTTGCG CGAGGACCTGCGGCAGTTGTTCGTCGATACCCGCTACGGCCTCGGCCAGATCGGCGAGCTGGTTTCCGGGCT CAAGGACTTCGCCCGCCTGGACCGCGCCTTCAGCGAGGAGGTCGACCTCAACGACTGCGTGCGCAACGCCTT GCTGATCGCCCGCACCGCCATCAAGGACAAGGCCGAGATCAGCAGCCAGCTCGGCGAGCTGCCGCTTATCGC CTGCGCGCCGTCGCAGATCAACCAGGTGCTGCTGAACCTGCTGACCAACGCCGCGCAGGCCATGGAGCGTTT CGGCCGCATCCTGCTGAAGAGCTGGGCCGACGAGCGCCAGGTGTTCCTCTCCGTGCAGGACAACGGCAAGGG CATGCCCGCCGAGGTCCTCGGGCGGATCTTCGACCCGTTCTTCACCACCAAGCCGGTGGGGCAGGGCACCGG GCTCGGCCTGTCGATCAGCTACAAGATCATCCAGCAACATGGCGGGACCATCCGCGTGGCCTCCGAACCGGG CCGCGGAACCCGCTTCCTCATCAGCCTGCCGCGAGAGCAGGCCCGCGAACTGAAACGGAGCGCCTGACATGA