ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6193

TrivialName: PA14_26820

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_26820

PAO1 Ortholog Locus:

Sequence Length: 1536

Protein Length: 511

Start: 2336592

Stop: 2335057

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAB03670.1| (Z81331) infB [Mycobacterium tuberculosis H37Rv] Identities = 46/152 (30%), Positives = 54/152 (35%), Gaps = 12/152 (7%)

Sequence:

ATGCATATCGGTTTTTCCGATGGTATCCAACTTAACCCTATCCCAAAGACCGATGACAATACAGCCCGACTT
CAACGACGAACCGGGAGCGTTCGCCATGACCCACACCCACACCGCCCTCGACAAGACTCTCAAGGAGCGGGT
CTTCCACGCCCTGGCCTTCGAGGGCCTGGCCGTCCTCCTCACCGCGCCGGTGCTGTCGCTGGTGATGAACAA
GCCCCTGGCGCACATGGGTGCGCTGACGCTGATGTTCTCCACCGTGGCGATGCTCTGGAACATGCTTTTCAA
CAGCCTCTTCGACCGCGCCCAGCGGCGCATGGGCTTCCAGCGCACCCTGCAGGTCCGGGTGCTGCATGCGAT
GCTCTTCGAGCTGGGGCTGATCGTGGTGCTGGTACCGCTGGCCGCCTGGTGGCTGTCGATCGGACTGGTCGA
GGCGTTCCTCCTCGACATGGGCCTGATCCTGTTCTTCCTGCCCTACACCATGGCCTTCAACTGGAGCTACGA
CGTACTCCGCGCACGCCTGGTGGAAAGCCGCCAGACCAAGGCCGCCGGTTGCGACGCCGGCTAGGCCGGCGT
TCAGGCCGTCAGCCGCTCGCGCAGGCGGCCGAGCATGCCGAGCAGGCTGCCGACCCGTTCCTTCTCGCGCTC
GTCGCGCGGCACCTCGGCCAGCCGGTCGACCTCCGGCAGGCTTCGCCCGCGCCACAACAAGGCCTGCTCGGC
GGCCGCCTTCAGGCCTTTCTCGAACAATCCCCTGCGGATCGGCTTGGGCAGGTAGCGGAATATCTGCGCCTG
GTTGATCAGCTCGAGCAGGGCCTGGGTGTCGCGGAACGGCGTAACCACCAGGCTGAGCAGGCGCGGATGGGC
CTGGGCCAGGGATTTCAGCAGCGGCGCGGTATGCTCCCCGGCCAGCTTCAGGTCGCTGACCAGCACCTCCAC
CGGTTCGGTGTTCAGCCATACCAGCGCCTCGGCCAGGTTGCGCGCGCGCAGCAGGCGATGCCCGCCGGCATG
GCAGAAGGCACCGACGCAGTCCAAGGTTTCCGGGTCGTCGTCGAGCAGCAGCACGCTCAGCGGCGCCGCCAG
CGTGGCCGCGGGCGGTGCCGGCAGGCCCTGGCGGCTGGCGATCTCCGCCGCCTGGCGCAGGGTGAAGGCCAT
TTCCTGGGGATTCCAGGGCTTGGTCAGGTAGCGAAAGATGCCGCCGTCGTTGAGCGCGTCGACGGCGGCATC
GAGGTCGGAATAGCCGGTGAGGAGAATCCGCAGGGTCTCCGGATAGCGCTCGCGAGCCTGCGCCAGCAGTTC
GGCGCCGCTCATCTGCGGCATGCGCTGGTCGCTGACCAGCACCTGTATCCGTTCCGTCTTCAGGCGCTCCAG
GGCGCGCCGCGGGTCGCTCTCGGTGAGCACCTCGTAATGGCGACGGAACTGCATGGCCAGGCTGCGCAGGAT
GCGCTCCTCGTCATCGACGAAGAGGATGCGGACGGGAGATGGGCTCATGTCAGGCGCTCCGTTTCAGTTCGC
GGGCCTGCTCTCGCGGCAGGCTGA

Translation:

MHIGFSDGIQLNPIPKTDDNTARLQRRTGSVRHDPHPHRPRQDSQGAGLPRPGLRGPGRPPHRAGAVAGDEQ
APGAHGCADADVLHRGDALEHAFQQPLRPRPAAHGLPAHPAGPGAACDALRAGADRGAGTAGRLVAVDRTGR
GVPPRHGPDPVLPALHHGLQLELRRTPRTPGGKPPDQGRRLRRRLGRRSGRQPLAQAAEHAEQAADPFLLAL
VARHLGQPVDLRQASPAPQQGLLGGRLQAFLEQSPADRLGQVAEYLRLVDQLEQGLGVAERRNHQAEQARMG
LGQGFQQRRGMLPGQLQVADQHLHRFGVQPYQRLGQVARAQQAMPAGMAEGTDAVQGFRVVVEQQHAQRRRQ
RGRGRCRQALAAGDLRRLAQGEGHFLGIPGLGQVAKDAAVVERVDGGIEVGIAGEENPQGLRIALASLRQQF
GAAHLRHALVADQHLYPFRLQALQGAPRVALGEHLVMATELHGQAAQDALLVIDEEDADGRWAHVRRSVSVR
GPALAAG*

AnnotationID:6194 GeneID:6193

AnnotatorUID: diggins

Modification Date/Time: 2004-12-02 08:08:19

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:12240

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29503

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36163

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6193_cdd.html

URL:

GC ORFID: `49195`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2617334`	Stop: `2618869`
Length: `1536`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCATATCGGTTTTTCCGATGGTATCCAACTTAACCCTATCCCAAAGACCGATGACAATACAGCCCGACTT CAACGACGAACCGGGAGCGTTCGCCATGACCCACACCCACACCGCCCTCGACAAGACTCTCAAGGAGCGGGT CTTCCACGCCCTGGCCTTCGAGGGCCTGGCCGTCCTCCTCACCGCGCCGGTGCTGTCGCTGGTGATGAACAA GCCCCTGGCGCACATGGGTGCGCTGACGCTGATGTTCTCCACCGTGGCGATGCTCTGGAACATGCTTTTCAA CAGCCTCTTCGACCGCGCCCAGCGGCGCATGGGCTTCCAGCGCACCCTGCAGGTCCGGGTGCTGCATGCGAT GCTCTTCGAGCTGGGGCTGATCGTGGTGCTGGTACCGCTGGCCGCCTGGTGGCTGTCGATCGGACTGGTCGA GGCGTTCCTCCTCGACATGGGCCTGATCCTGTTCTTCCTGCCCTACACCATGGCCTTCAACTGGAGCTACGA CGTACTCCGCGCACGCCTGGTGGAAAGCCGCCAGACCAAGGCCGCCGGTTGCGACGCCGGCTAGGCCGGCGT TCAGGCCGTCAGCCGCTCGCGCAGGCGGCCGAGCATGCCGAGCAGGCTGCCGACCCGTTCCTTCTCGCGCTC GTCGCGCGGCACCTCGGCCAGCCGGTCGACCTCCGGCAGGCTTCGCCCGCGCCACAACAAGGCCTGCTCGGC GGCCGCCTTCAGGCCTTTCTCGAACAATCCCCTGCGGATCGGCTTGGGCAGGTAGCGGAATATCTGCGCCTG GTTGATCAGCTCGAGCAGGGCCTGGGTGTCGCGGAACGGCGTAACCACCAGGCTGAGCAGGCGCGGATGGGC CTGGGCCAGGGATTTCAGCAGCGGCGCGGTATGCTCCCCGGCCAGCTTCAGGTCGCTGACCAGCACCTCCAC CGGTTCGGTGTTCAGCCATACCAGCGCCTCGGCCAGGTTGCGCGCGCGCAGCAGGCGATGCCCGCCGGCATG GCAGAAGGCACCGACGCAGTCCAAGGTTTCCGGGTCGTCGTCGAGCAGCAGCACGCTCAGCGGCGCCGCCAG CGTGGCCGCGGGCGGTGCCGGCAGGCCCTGGCGGCTGGCGATCTCCGCCGCCTGGCGCAGGGTGAAGGCCAT TTCCTGGGGATTCCAGGGCTTGGTCAGGTAGCGAAAGATGCCGCCGTCGTTGAGCGCGTCGACGGCGGCATC GAGGTCGGAATAGCCGGTGAGGAGAATCCGCAGGGTCTCCGGATAGCGCTCGCGAGCCTGCGCCAGCAGTTC GGCGCCGCTCATCTGCGGCATGCGCTGGTCGCTGACCAGCACCTGTATCCGTTCCGTCTTCAGGCGCTCCAG GGCGCGCCGCGGGTCGCTCTCGGTGAGCACCTCGTAATGGCGACGGAACTGCATGGCCAGGCTGCGCAGGAT GCGCTCCTCGTCATCGACGAAGAGGATGCGGACGGGAGATGGGCTCATGTCAGGCGCTCCGTTTCAGTTCGC GGGCCTGCTCTCGCGGCAGGCTGA