ViewGene
Locus Name:
GeneID:
Location:

GeneID:6191
TrivialName: PA14_26900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26900
PAO1 Ortholog Locus:
Sequence Length:924
Protein Length:307
Start: 2340957
Stop: 2340034
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAA80309.1| (AP000061) 105aa long hypothetical protein [Aeropyrum pernix]
Identities = 30/98 (30%), Positives = 51/98 (52%)
Sequence:
ATGCCCGGCGACCGCCGGCAACACCGCCTGGACGTCTTCCGGAATCACATAGTCGCGTCCCGCCAGCAGCGC
CCAGGCACGCGCCGCGGCGAGCAACGCCAGGCTACCGCGCGGCGACAGGCCGAGGGCGAAGGCCGGCTGCGT
GCGGGTCGCTTCGACCAGGCGCAGCACGTAGTCCACCAGCGCATCGCTGGCGCGGACCTTCGGCACTTCGGC
CTGGAAAGCGGCCAGCGCCGCGTGGTCGAGCAAGGGCTCCAGGCGCGGCAGCAGATCGCGCCGGGCTTCGCC
GAGCAGCAGCGAACGTTCCGCCGCGCGTCCGGGGTAGCCCAGCGACAGGCGCATCAGGAAGCGATCCAGCTG
CGATTCCGGCAGGGAGAAGGTGCCGCCCTGGCTGGCCGGGTTCTGCGTGGCGATGACGAAGAACGGTTCCGG
CAAGGGCCGGGTGGCGCCCTCGATGGTCACCTGGCCTTCTTCCATCGCCTCGAGCAAGGCGCTCTGGCTTTT
CGGCGTGGCGCGGTTGATCTCGTCGGCGAGCACCAGCTCGGCGAAGATCGGCCCGGGATGGAAGACGAATTG
TCCGCTGTCCTTGTCGAACACCGAGGTACCGAGGATATCGCCCGGCAGCAGGTCCGAGGTGAACTGGATGCG
CTGGAAACTGAGCCCGAGCACCCGCGCCAGGGCATGGCTGAGGGTGGTCTTGCCCATCCCCGGCAGGTCTTC
GATCAACAGGTGCCCACGGGCCAGCAGGCAGGCCAGGGCCAGGCGCACCTGGCGGTCCTTGCCCAGGAGAAT
CTCATCGACCGCCTTCAGGCAGGCTTCCAGGGTGTTCAGCATCCCGACCTCGCGTTTCCGGGGAAAACAGCG
ATCCTACTGGCCTGGGGCCAGCCGGCAAGGCACTTGCAATTTTTCCTCACGAAACTGTGA
Translation:
MPGDRRQHRLDVFRNHIVASRQQRPGTRRGEQRQATARRQAEGEGRLRAGRFDQAQHVVHQRIAGADLRHFG
LESGQRRVVEQGLQARQQIAPGFAEQQRTFRRASGVAQRQAHQEAIQLRFRQGEGAALAGRVLRGDDEERFR
QGPGGALDGHLAFFHRLEQGALAFRRGAVDLVGEHQLGEDRPGMEDELSAVLVEHRGTEDIARQQVRGELDA
LETEPEHPRQGMAEGGLAHPRQVFDQQVPTGQQAGQGQAHLAVLAQENLIDRLQAGFQGVQHPDLAFPGKTA
ILLAWGQPARHLQFFLTKL*
AnnotationID:6192GeneID:6191
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 07:07:42
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:12236




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29499




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49193How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2612969Stop: 2613892

          
Length: 924


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCCCGGCGACCGCCGGCAACACCGCCTGGACGTCTTCCGGAATCACATAGTCGCGTCCCGCCAGCAGCGC 
CCAGGCACGCGCCGCGGCGAGCAACGCCAGGCTACCGCGCGGCGACAGGCCGAGGGCGAAGGCCGGCTGCGT 
GCGGGTCGCTTCGACCAGGCGCAGCACGTAGTCCACCAGCGCATCGCTGGCGCGGACCTTCGGCACTTCGGC 
CTGGAAAGCGGCCAGCGCCGCGTGGTCGAGCAAGGGCTCCAGGCGCGGCAGCAGATCGCGCCGGGCTTCGCC 
GAGCAGCAGCGAACGTTCCGCCGCGCGTCCGGGGTAGCCCAGCGACAGGCGCATCAGGAAGCGATCCAGCTG 
CGATTCCGGCAGGGAGAAGGTGCCGCCCTGGCTGGCCGGGTTCTGCGTGGCGATGACGAAGAACGGTTCCGG 
CAAGGGCCGGGTGGCGCCCTCGATGGTCACCTGGCCTTCTTCCATCGCCTCGAGCAAGGCGCTCTGGCTTTT 
CGGCGTGGCGCGGTTGATCTCGTCGGCGAGCACCAGCTCGGCGAAGATCGGCCCGGGATGGAAGACGAATTG 
TCCGCTGTCCTTGTCGAACACCGAGGTACCGAGGATATCGCCCGGCAGCAGGTCCGAGGTGAACTGGATGCG 
CTGGAAACTGAGCCCGAGCACCCGCGCCAGGGCATGGCTGAGGGTGGTCTTGCCCATCCCCGGCAGGTCTTC 
GATCAACAGGTGCCCACGGGCCAGCAGGCAGGCCAGGGCCAGGCGCACCTGGCGGTCCTTGCCCAGGAGAAT 
CTCATCGACCGCCTTCAGGCAGGCTTCCAGGGTGTTCAGCATCCCGACCTCGCGTTTCCGGGGAAAACAGCG 
ATCCTACTGGCCTGGGGCCAGCCGGCAAGGCACTTGCAATTTTTCCTCACGAAACTGTGA