ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6190

TrivialName: PA14_26950

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_26950

PAO1 Ortholog Locus:

Sequence Length: 1470

Protein Length: 489

Start: 2346281

Stop: 2344812

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 99/368 (26%), Positives = 134/368 (36%), Gaps = 78/368 (21%)

Sequence:

ATGCGGGGAAACGCCTTGCTGGGCGGTGATCTGCGCGCGCCACCTGGAAATCGACGGCGAGCCGGCGACCCT
GATCTGGTGCTACGACATCAGCCGGCGCAAGGCCATGGAACAGGAACTGCGCCTGCTGGCCAGCACCGATAC
CCTGACCGGCCTGCACAACCGCCACTCGTTCCTGCACCAGGCGGAACTCATGCTCAAGGCCGCCGAACGCTT
CCGCCACCCCTGCGTGGCGCTGATGCTGGACATCGACCATTTCAAGAACATCAACGACAGCCACGGCCACCT
GACCGGCGACCGCGCCCTGCAACGTGTCGCCGAGACCCTGCGCCAGGGCCTGCGCGAGGTGGACCTGCTCGG
TCGCCTGGGCGGCGAGGAATTCGCCGCGCTGCTTCCGGAGGTCAGCCTGGACCAGGCGCTGGACGTCGCCGA
ACGGCTGCGCGCCGGCGTCGAGGCGCTACGGGTGAGCAATCCCGACGGCGAACCGTTGCGAATGACCGTGAG
CATCGGCGTCGCCCTGCGCAGGGACGCCGGGGACGACCTGGAAAGCCTGCTGGTGCGCGCCGACAGCGCGCT
CTACCAGGCCAAGAGCGGCGGGCGCAACCGCACCGAGTACGCGCCCGCCTGACATGCGCCTCAGCCGAACAC
CGTGACCATCTGCCGGCTGATCGCCAGCAACTGGCCGTCGGCGCTCCACATCCGCGCCGCCACGTGGCCGTA
GCCGTCGCGCGCCTCCTCGATCTCCGCCAGGTAACGGCACCAGTCGCCGCTGCGCTGCTGCGGCAGCGGCTG
GAGGAACTCGGCGGTCCAGGTCAGCGAGCTGGCCATCGCCGGGGTGCCCAGGTGCGGCAACAGCGCCGGCGG
CCAGGAGTCGAGCAGCGCCAGCAAGTGGGAAACCTCCATGGTCTCTCCCTCGGGTTCGTCGCGGAAACGCAT
CCAGCCGCCCATCTGGCGCGACTTGTTCGAAGAGAACGGCAGGCCGCCCACTGCCCAGCGCATGGCGATGTA
GCGAGTGAACTCCGGGGTCACGTTACGGATATAGGGCAGCTCCTGGCTCTCTTCAGGGCCCTTCATCCCGGC
CGCCGGCAACGCTTCCACCGCCACCGCCGACGCGCGGGCGACGCCGAAACTGGCCTGGACCAGCGTCACCAC
CTGCTCGCCCTGACGGACCTCGACCTGTACCTGGCTCACCGCCTTGCCCTCGCGCAACAGCCGGGCGCTGAA
GCTCGCCGGCTGCTCGGGGGCCAGCGGTCCGACGAAGCTGACGCCGATGGAGCGCAACGGACGCCCCGCCTC
GACCACCGCAAGCATGGCCTCGTAGGCCAGCGCCACCACCAGGCCGCCGAAGGTGGCGCGGCCCTGGCCCCA
ACTGGCCGGTACTACCACCGAGGAAGGGTCACGGCGGACCGCCTGGATCAATTCGGAAAAATTCATGTGTGC
CTCGCGAGGGGATTCGAGGGCCCATCTTAG

Translation:

MRGNALLGGDLRAPPGNRRRAGDPDLVLRHQPAQGHGTGTAPAGQHRYPDRPAQPPLVPAPGGTHAQGRRTL
PPPLRGADAGHRPFQEHQRQPRPPDRRPRPATCRRDPAPGPARGGPARSPGRRGIRRAASGGQPGPGAGRRR
TAARRRRGATGEQSRRRTVANDREHRRRPAQGRRGRPGKPAGARRQRALPGQERRAQPHRVRARLTCASAEH
RDHLPADRQQLAVGAPHPRRHVAVAVARLLDLRQVTAPVAAALLRQRLEELGGPGQRAGHRRGAQVRQQRRR
PGVEQRQQVGNLHGLSLGFVAETHPAAHLARLVRRERQAAHCPAHGDVASELRGHVTDIGQLLALFRALHPG
RRQRFHRHRRRAGDAETGLDQRHHLLALTDLDLYLAHRLALAQQPGAEARRLLGGQRSDEADADGAQRTPRL
DHRKHGLVGQRHHQAAEGGAALAPTGRYYHRGRVTADRLDQFGKIHVCLARGFEGPS*

AnnotationID:6191 GeneID:6190

AnnotatorUID: diggins

Modification Date/Time: 2004-12-02 13:01:50

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:12234

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29497

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36172

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6190_cdd.html

URL:

GC ORFID: `49192`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2607645`	Stop: `2609114`
Length: `1470`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCGGGGAAACGCCTTGCTGGGCGGTGATCTGCGCGCGCCACCTGGAAATCGACGGCGAGCCGGCGACCCT GATCTGGTGCTACGACATCAGCCGGCGCAAGGCCATGGAACAGGAACTGCGCCTGCTGGCCAGCACCGATAC CCTGACCGGCCTGCACAACCGCCACTCGTTCCTGCACCAGGCGGAACTCATGCTCAAGGCCGCCGAACGCTT CCGCCACCCCTGCGTGGCGCTGATGCTGGACATCGACCATTTCAAGAACATCAACGACAGCCACGGCCACCT GACCGGCGACCGCGCCCTGCAACGTGTCGCCGAGACCCTGCGCCAGGGCCTGCGCGAGGTGGACCTGCTCGG TCGCCTGGGCGGCGAGGAATTCGCCGCGCTGCTTCCGGAGGTCAGCCTGGACCAGGCGCTGGACGTCGCCGA ACGGCTGCGCGCCGGCGTCGAGGCGCTACGGGTGAGCAATCCCGACGGCGAACCGTTGCGAATGACCGTGAG CATCGGCGTCGCCCTGCGCAGGGACGCCGGGGACGACCTGGAAAGCCTGCTGGTGCGCGCCGACAGCGCGCT CTACCAGGCCAAGAGCGGCGGGCGCAACCGCACCGAGTACGCGCCCGCCTGACATGCGCCTCAGCCGAACAC CGTGACCATCTGCCGGCTGATCGCCAGCAACTGGCCGTCGGCGCTCCACATCCGCGCCGCCACGTGGCCGTA GCCGTCGCGCGCCTCCTCGATCTCCGCCAGGTAACGGCACCAGTCGCCGCTGCGCTGCTGCGGCAGCGGCTG GAGGAACTCGGCGGTCCAGGTCAGCGAGCTGGCCATCGCCGGGGTGCCCAGGTGCGGCAACAGCGCCGGCGG CCAGGAGTCGAGCAGCGCCAGCAAGTGGGAAACCTCCATGGTCTCTCCCTCGGGTTCGTCGCGGAAACGCAT CCAGCCGCCCATCTGGCGCGACTTGTTCGAAGAGAACGGCAGGCCGCCCACTGCCCAGCGCATGGCGATGTA GCGAGTGAACTCCGGGGTCACGTTACGGATATAGGGCAGCTCCTGGCTCTCTTCAGGGCCCTTCATCCCGGC CGCCGGCAACGCTTCCACCGCCACCGCCGACGCGCGGGCGACGCCGAAACTGGCCTGGACCAGCGTCACCAC CTGCTCGCCCTGACGGACCTCGACCTGTACCTGGCTCACCGCCTTGCCCTCGCGCAACAGCCGGGCGCTGAA GCTCGCCGGCTGCTCGGGGGCCAGCGGTCCGACGAAGCTGACGCCGATGGAGCGCAACGGACGCCCCGCCTC GACCACCGCAAGCATGGCCTCGTAGGCCAGCGCCACCACCAGGCCGCCGAAGGTGGCGCGGCCCTGGCCCCA ACTGGCCGGTACTACCACCGAGGAAGGGTCACGGCGGACCGCCTGGATCAATTCGGAAAAATTCATGTGTGC CTCGCGAGGGGATTCGAGGGCCCATCTTAG