ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6188

TrivialName: PA14_27030

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_27030

PAO1 Ortholog Locus:

Sequence Length: 1554

Protein Length: 517

Start: 2350778

Stop: 2352331

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAM14703.1| (AY091666) unknown [Pseudomonas mendocina] Identities = 76/160 (47%), Positives = 87/160 (54%), Gaps = 4/160 (2%)

Sequence:

ATGGGTGGCAAACCGCTTGTAGAACAATCCGTTATAATCGCAGATCGGGTTCTTCGGCGCCCGGATTATCTA
CCCAATGCCTCCGTTTGCAGCCGCTGTCGGAGAGGAACTTGCCAAGACTGCCATGCTCTGATTGATCCGGTC
CCCCGGAGAGGGACATCGAGCCTGGCCTCTGGAGACCTGGATGACGCGTCTGTTGCTGCTTTCGCTTTGCCT
GCTGGTGCTCGCACCCTTGCCGGCGGCTGCGCGCATCACCGGCCAGCCGGACAACTGGCACAAGGAACAGCC
GGAGACCCGCGACCTGGCGAGCATCCGCCGCGCTGGCGTGCTCAAGGTGCTGGTCAACCAGAGCCGCAACAG
CTCGGGCGAGGTGAAGGGCGAGCCAATCGGCGTCGAGTACCGTCGCCTGCGCGCCTTCGAGCAATACCTCAA
CAGCCGCTCGCCGTCCGCGCGGAACCTCACCCTCAAGCTCATACCCAAGCCCAAGGACCAGTTGCTTGCCGC
CCTGCAGCGTGGCGAAGGCGACCTGGTCGCCCCCGGCGAACTGCTGCCGGCGCACGACGGCCTGCAGGTCAG
CCCGAGCGCGCCGGTGCGCGCCGATGTGCCGCTGGTGCTGGTGGCGCGCAAGGGCAACCGGCGCTACACGCG
CCTGGAGCAGTTGTCCGGGCGGACCATCCCGCTGCCGGCCGGCAGCGCCGCCGAGGGCGCCATCGAACTGGT
CAACCAGCGCCTGGCGCAACGCCGCATGGCACCGATCCGGATCGAAAAGCTGGACGCTTCCCTGGCCGTCGA
GGATGTGATGGAAATGGTCCAGGCAGGCATCCTCGGCTTCACCGTGGTCGAGCAGCCCATCGCCGAACGCTG
GGCCAAGGTGCTGCCGAAGCTGCGCGTCGACCGCCACCTGGTGCTGGACAATCGCGCCGACATGGCCTGGTA
CGTGCGCCGCGATGCCAGCACCCTGCGCGCGACCATCGACCGCTTCCTCGCCGACTACCGCGCGCCGGCCGA
CCAGGACGTGGCTTTCCAGCGCGTCTACCGGCGCGCCTACAAGGTCCGCAACCCCCTCGGCGCGGCGGACCG
CAAGCGCCTGGAAGCGGTCCGTCCACTGCTGCAGCGCTACGCGCAGCAGAGCAGCATGGACTGGCTGGCGCT
GGCGGCGGTGGCCTACAAGGAGTCGCACCTGAACCCGAAGGCGCGCGGTTCCGGCGGCGCCAGCGGGCTGAT
GCAGATCACCCCGGCGGCGGCGCGCAGCGTCGGGGTCGGCAATGTGCACGACAAGGACAGCAACGTGCTGGC
CGCCAGTCGCTACCTGACCAAGATCCGCAAGCAGTTCTTCTCCAGCAAGCACCTCGACGAACGCGAGCGCCT
GGCGTTCACCCTGGCGGCCTACAACATGGGCCCGGAGCGGGTGCAGAACCTGCGCACCCAGGCGCGTCGCCG
GGGGCTCGATCCGAATCGCTGGTTCTTCCAGGTAGAGCGGGTGGCTGCGGAAGAGATAGGCATGGGTGTGGT
GAGTTATGTCAGCAGCGTCAACAAGTACTACCTTGCATATGA

Translation:

MGGKPLVEQSVIIADRVLRRPDYLPNASVCSRCRRGTCQDCHALIDPVPRRGTSSLASGDLDDASVAAFALP
AGARTLAGGCAHHRPAGQLAQGTAGDPRPGEHPPRWRAQGAGQPEPQQLGRGEGRANRRRVPSPARLRAIPQ
QPLAVRAEPHPQAHTQAQGPVACRPAAWRRRPGRPRRTAAGARRPAGQPERAGARRCAAGAGGAQGQPALHA
PGAVVRADHPAAGRQRRRGRHRTGQPAPGATPHGTDPDRKAGRFPGRRGCDGNGPGRHPRLHRGRAAHRRTL
GQGAAEAARRPPPGAGQSRRHGLVRAPRCQHPARDHRPLPRRLPRAGRPGRGFPARLPARLQGPQPPRRGGP
QAPGSGPSTAAALRAAEQHGLAGAGGGGLQGVAPEPEGARFRRRQRADADHPGGGAQRRGRQCARQGQQRAG
RQSLPDQDPQAVLLQQAPRRTRAPGVHPGGLQHGPGAGAEPAHPGASPGARSESLVLPGRAGGCGRDRHGCG
ELCQQRQQVLPCI*

AnnotationID:6189 GeneID:6188

AnnotatorUID: diggins

Modification Date/Time: 2004-12-03 06:06:22

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:12230

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29493

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36199

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6188_cdd.html

URL:

Homologs By Global Alignment

Gene ID:6188

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

198639 gb|AAM14703.1| (AY091666) unknown [Pseudomonas mendocina] 892 9.08 10.53 722 294.0

GC ORFID: `49190`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2603148`	Stop: `2601595`
Length: `1554`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGGTGGCAAACCGCTTGTAGAACAATCCGTTATAATCGCAGATCGGGTTCTTCGGCGCCCGGATTATCTA CCCAATGCCTCCGTTTGCAGCCGCTGTCGGAGAGGAACTTGCCAAGACTGCCATGCTCTGATTGATCCGGTC CCCCGGAGAGGGACATCGAGCCTGGCCTCTGGAGACCTGGATGACGCGTCTGTTGCTGCTTTCGCTTTGCCT GCTGGTGCTCGCACCCTTGCCGGCGGCTGCGCGCATCACCGGCCAGCCGGACAACTGGCACAAGGAACAGCC GGAGACCCGCGACCTGGCGAGCATCCGCCGCGCTGGCGTGCTCAAGGTGCTGGTCAACCAGAGCCGCAACAG CTCGGGCGAGGTGAAGGGCGAGCCAATCGGCGTCGAGTACCGTCGCCTGCGCGCCTTCGAGCAATACCTCAA CAGCCGCTCGCCGTCCGCGCGGAACCTCACCCTCAAGCTCATACCCAAGCCCAAGGACCAGTTGCTTGCCGC CCTGCAGCGTGGCGAAGGCGACCTGGTCGCCCCCGGCGAACTGCTGCCGGCGCACGACGGCCTGCAGGTCAG CCCGAGCGCGCCGGTGCGCGCCGATGTGCCGCTGGTGCTGGTGGCGCGCAAGGGCAACCGGCGCTACACGCG CCTGGAGCAGTTGTCCGGGCGGACCATCCCGCTGCCGGCCGGCAGCGCCGCCGAGGGCGCCATCGAACTGGT CAACCAGCGCCTGGCGCAACGCCGCATGGCACCGATCCGGATCGAAAAGCTGGACGCTTCCCTGGCCGTCGA GGATGTGATGGAAATGGTCCAGGCAGGCATCCTCGGCTTCACCGTGGTCGAGCAGCCCATCGCCGAACGCTG GGCCAAGGTGCTGCCGAAGCTGCGCGTCGACCGCCACCTGGTGCTGGACAATCGCGCCGACATGGCCTGGTA CGTGCGCCGCGATGCCAGCACCCTGCGCGCGACCATCGACCGCTTCCTCGCCGACTACCGCGCGCCGGCCGA CCAGGACGTGGCTTTCCAGCGCGTCTACCGGCGCGCCTACAAGGTCCGCAACCCCCTCGGCGCGGCGGACCG CAAGCGCCTGGAAGCGGTCCGTCCACTGCTGCAGCGCTACGCGCAGCAGAGCAGCATGGACTGGCTGGCGCT GGCGGCGGTGGCCTACAAGGAGTCGCACCTGAACCCGAAGGCGCGCGGTTCCGGCGGCGCCAGCGGGCTGAT GCAGATCACCCCGGCGGCGGCGCGCAGCGTCGGGGTCGGCAATGTGCACGACAAGGACAGCAACGTGCTGGC CGCCAGTCGCTACCTGACCAAGATCCGCAAGCAGTTCTTCTCCAGCAAGCACCTCGACGAACGCGAGCGCCT GGCGTTCACCCTGGCGGCCTACAACATGGGCCCGGAGCGGGTGCAGAACCTGCGCACCCAGGCGCGTCGCCG GGGGCTCGATCCGAATCGCTGGTTCTTCCAGGTAGAGCGGGTGGCTGCGGAAGAGATAGGCATGGGTGTGGT GAGTTATGTCAGCAGCGTCAACAAGTACTACCTTGCATATGA