ViewGene
Locus Name:
GeneID:
Location:

GeneID:6184
TrivialName: PA14_27240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27240
PAO1 Ortholog Locus:
Sequence Length:1008
Protein Length:335
Start: 2366038
Stop: 2367045
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAA46093.1| (X64876) orfA [Bordetella pertussis]
Identities = 52/184 (28%), Positives = 71/184 (38%), Gaps = 19/184 (10%)
Sequence:
TTGGCTTTCCAGGTTTCCCGCCGGGTGGTGTCTTCAGCGCTCGCCGAGACGCTGCTGCAGGGCTTGGTCCCA
GGGTGGCGGAAAGCCGAAGCGCTCGCGGAGgAAAGCCAGCAGCAGGCGGGTTCGCGAACTGGCTTCGCGTTC
CAGGCGCAGGGCATAGATGCAGGTGGGCTCGGCGGCGGGCAAGCCCTCGTCGCAGAACAGCGCCTGCAGTTC
GCCGCGCAGCAAGTACTCGCTGCACAGCCAGGTCGGCAGGTGGGCGATGCCGAGGCCGGCCAGCGCCGCGTC
GACCATCGCTTCGGCGTTATTGGTGGCCAGCCGCGCCCGTTTCGGCCGCAGGTGCTGGAGCTTGCCGTCGTG
CTGGAAGCGCCAGGCATAGGGTGGCGACAGGTTGTCCCAATCGATGCCGGCATGCTCCGGCAGTTCGCCGGG
GGATGCGGGAACGCCATGTTCGCGCAGGTACTCCGGGCTGGCGCAGACGACCCGCACCATCGGCGCCAGCGA
AGTGGCCACCAGGCGGCTGTCGGGCAGCGGGCCGGCGCGCAACACCAGGTCGACCTCGCCGAGATGTTCGCC
CTGCAGGTCGATGAAGCTGCCGATCAGGCGCAATTGCACGTCCAGCCCGGGGTTGGCCTTGAGGAAGTCGGC
GATCGCCGGGGCCAGGTGGCGGCGGCCGAAGGGCACCGGCGCATCGATACGGATCAGGCCCTGCGGCGCGGT
GCTCAGGGACACCGCTTCGGCGCGGGCCAGGCGCAGTTCGGTGACGATCCGCCGGGCGCGGTCGGCGAAGGC
CAGGCCGGCCGGCGTGGCGCGGACCGCATGGGTGGTGCGCACCAGCAGGGTGCTGCCGACGGCGCGCTCCAG
GGCGTCCATCCGGCGCGCTACGGCGGACGGGGTGAGCGGGTGCTTGCGGGCAGCGGCGGAGAAGCTGCCGCC
ATCGAGGACATCGAGGTAGAGAACGAACTGTTCGCTGAGGGTATCGGGCAACATGCTCATGCCTTTGCGTGA
Translation:
MAFQVSRRVVSSALAETLLQGLVPGWRKAEALAEESQQQAGSRTGFAFQAQGIDAGGLGGGQALVAEQRLQF
AAQQVLAAQPGRQVGDAEAGQRRVDHRFGVIGGQPRPFRPQVLELAVVLEAPGIGWRQVVPIDAGMLRQFAG
GCGNAMFAQVLRAGADDPHHRRQRSGHQAAVGQRAGAQHQVDLAEMFALQVDEAADQAQLHVQPGVGLEEVG
DRRGQVAAAEGHRRIDTDQALRRGAQGHRFGAGQAQFGDDPPGAVGEGQAGRRGADRMGGAHQQGAADGALQ
GVHPARYGGRGERVLAGSGGEAAAIEDIEVENELFAEGIGQHAHAFA*
AnnotationID:6185GeneID:6184
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 19:07:38
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15980




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29485




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49186How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2587889Stop: 2586882

          
Length: 1008


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
TTGGCTTTCCAGGTTTCCCGCCGGGTGGTGTCTTCAGCGCTCGCCGAGACGCTGCTGCAGGGCTTGGTCCCA 
GGGTGGCGGAAAGCCGAAGCGCTCGCGGAGgAAAGCCAGCAGCAGGCGGGTTCGCGAACTGGCTTCGCGTTC 
CAGGCGCAGGGCATAGATGCAGGTGGGCTCGGCGGCGGGCAAGCCCTCGTCGCAGAACAGCGCCTGCAGTTC 
GCCGCGCAGCAAGTACTCGCTGCACAGCCAGGTCGGCAGGTGGGCGATGCCGAGGCCGGCCAGCGCCGCGTC 
GACCATCGCTTCGGCGTTATTGGTGGCCAGCCGCGCCCGTTTCGGCCGCAGGTGCTGGAGCTTGCCGTCGTG 
CTGGAAGCGCCAGGCATAGGGTGGCGACAGGTTGTCCCAATCGATGCCGGCATGCTCCGGCAGTTCGCCGGG 
GGATGCGGGAACGCCATGTTCGCGCAGGTACTCCGGGCTGGCGCAGACGACCCGCACCATCGGCGCCAGCGA 
AGTGGCCACCAGGCGGCTGTCGGGCAGCGGGCCGGCGCGCAACACCAGGTCGACCTCGCCGAGATGTTCGCC 
CTGCAGGTCGATGAAGCTGCCGATCAGGCGCAATTGCACGTCCAGCCCGGGGTTGGCCTTGAGGAAGTCGGC 
GATCGCCGGGGCCAGGTGGCGGCGGCCGAAGGGCACCGGCGCATCGATACGGATCAGGCCCTGCGGCGCGGT 
GCTCAGGGACACCGCTTCGGCGCGGGCCAGGCGCAGTTCGGTGACGATCCGCCGGGCGCGGTCGGCGAAGGC 
CAGGCCGGCCGGCGTGGCGCGGACCGCATGGGTGGTGCGCACCAGCAGGGTGCTGCCGACGGCGCGCTCCAG 
GGCGTCCATCCGGCGCGCTACGGCGGACGGGGTGAGCGGGTGCTTGCGGGCAGCGGCGGAGAAGCTGCCGCC 
ATCGAGGACATCGAGGTAGAGAACGAACTGTTCGCTGAGGGTATCGGGCAACATGCTCATGCCTTTGCGTGA