ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6183

TrivialName: PA14_27260

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_27260

PAO1 Ortholog Locus:

Sequence Length: 1380

Protein Length: 459

Start: 2367721

Stop: 2366342

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 140/544 (25%), Positives = 181/544 (33%), Gaps = 109/544 (20%)

Sequence:

ATGACCGTGCATGGCGTAGGTCCCCAGCGCCACCGCCGTGCTCGGTGCGGCCAGGGCCAGCGCGAGGCCCTG
TGCGACGACCTGGGCGAGGCCGAACACCGAAGTCAGCACCGGTGTCGCCAGCACCCCGCCGCCCACCCCGAA
AAGCCCGCCGAGCGAACCTGCGCCAAGGCCCAGCACGCCCATCCAGGGCAAACCGTAGCGCGGCGTCGCGCC
GCCCTGCGGCGGGCGCCGGAACAGGCGCCAGAACATGTAGCCGGCCAGCGCCAGGAGGAAGATCACGAACGC
TTCGCGCATCCGCGCCGCATCGATCCGCGCGGCCACGCTGGACGCCAGGAACGCGCAAAGCAGGCCGGTCAG
GGCAAGGACTCCGGCCTGGCGCGGATCGATGCGGTTGCGCTGGTGGTAGCGCCACAACGCCAGCACCACGTT
CGGTACCACCATCACCAGCGCGGTACCCTGCGCCAATTGCTGGTCGAGGCCGAAGATCACCCCCAGCGCCGG
GATCGCCAGCAGGCCGCCGCCTATCCCGAACAGACCGCCCAGGCAACCGAGCACCATCCCCAGCAGGAAATC
GAGAAATACATCCAGCATGTCAGCCCCTCTTTCGACGCCTCCATGCTAGGCAAGCGTGGCTGGATGGGAAAC
GCACAAGAAAGCACAATGGCTATGCCAATCACGCAAAGGCATGAGCATGTTGCCCGATACCCTCAGCGAACA
GTTCGTTCTCTACCTCGATGTCCTCGATGGCGGCAGCTTCTCCGCCGCTGCCCGCAAGCACCCGCTCACCCC
GTCCGCCGTAGCGCGCCGGATGGACGCCCTGGAGCGCGCCGTCGGCAGCACCCTGCTGGTGCGCACCACCCA
TGCGGTCCGCGCCACGCCGGCCGGCCTGGCCTTCGCCGACCGCGCCCGGCGGATCGTCACCGAACTGCGCCT
GGCCCGCGCCGAAGCGGTGTCCCTGAGCACCGCGCCGCAGGGCCTGATCCGTATCGATGCGCCGGTGCCCTT
CGGCCGCCGCCACCTGGCCCCGGCGATCGCCGACTTCCTCAAGGCCAACCCCGGGCTGGACGTGCAATTGCG
CCTGATCGGCAGCTTCATCGACCTGCAGGGCGAACATCTCGGCGAGGTCGACCTGGTGTTGCGCGCCGGCCC
GCTGCCCGACAGCCGCCTGGTGGCCACTTCGCTGGCGCCGATGGTGCGGGTCGTCTGCGCCAGCCCGGAGTA
CCTGCGCGAACATGGCGTTCCCGCATCCCCCGGCGAACTGCCGGAGCATGCCGGCATCGATTGGGACAACCT
GTCGCCACCCTATGCCTGGCGCTTCCAGCACGACGGCAAGCTCCAGCACCTGCGGCCGAAACGGGCGCGGCT
GGCCACCAATAA

Translation:

MTVHGVGPQRHRRARCGQGQREALCDDLGEAEHRSQHRCRQHPAAHPEKPAERTCAKAQHAHPGQTVARRRA
ALRRAPEQAPEHVAGQRQEEDHERFAHPRRIDPRGHAGRQERAKQAGQGKDSGLARIDAVALVVAPQRQHHV
RYHHHQRGTLRQLLVEAEDHPQRRDRQQAAAYPEQTAQATEHHPQQEIEKYIQHVSPSFDASMLGKRGWMGN
AQESTMAMPITQRHEHVARYPQRTVRSLPRCPRWRQLLRRCPQAPAHPVRRSAPDGRPGARRRQHPAGAHHP
CGPRHAGRPGLRRPRPADRHRTAPGPRRSGVPEHRAAGPDPYRCAGALRPPPPGPGDRRLPQGQPRAGRAIA
PDRQLHRPAGRTSRRGRPGVARRPAARQPPGGHFAGADGAGRLRQPGVPARTWRSRIPRRTAGACRHRLGQP
VATLCLALPARRQAPAPAAETGAAGHQ*

AnnotationID:6184 GeneID:6183

AnnotatorUID: diggins

Modification Date/Time: 2004-12-02 19:07:37

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:12222

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29484

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36181

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6183_cdd.html

URL:

GC ORFID: `49185`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2586206`	Stop: `2587585`
Length: `1380`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGACCGTGCATGGCGTAGGTCCCCAGCGCCACCGCCGTGCTCGGTGCGGCCAGGGCCAGCGCGAGGCCCTG TGCGACGACCTGGGCGAGGCCGAACACCGAAGTCAGCACCGGTGTCGCCAGCACCCCGCCGCCCACCCCGAA AAGCCCGCCGAGCGAACCTGCGCCAAGGCCCAGCACGCCCATCCAGGGCAAACCGTAGCGCGGCGTCGCGCC GCCCTGCGGCGGGCGCCGGAACAGGCGCCAGAACATGTAGCCGGCCAGCGCCAGGAGGAAGATCACGAACGC TTCGCGCATCCGCGCCGCATCGATCCGCGCGGCCACGCTGGACGCCAGGAACGCGCAAAGCAGGCCGGTCAG GGCAAGGACTCCGGCCTGGCGCGGATCGATGCGGTTGCGCTGGTGGTAGCGCCACAACGCCAGCACCACGTT CGGTACCACCATCACCAGCGCGGTACCCTGCGCCAATTGCTGGTCGAGGCCGAAGATCACCCCCAGCGCCGG GATCGCCAGCAGGCCGCCGCCTATCCCGAACAGACCGCCCAGGCAACCGAGCACCATCCCCAGCAGGAAATC GAGAAATACATCCAGCATGTCAGCCCCTCTTTCGACGCCTCCATGCTAGGCAAGCGTGGCTGGATGGGAAAC GCACAAGAAAGCACAATGGCTATGCCAATCACGCAAAGGCATGAGCATGTTGCCCGATACCCTCAGCGAACA GTTCGTTCTCTACCTCGATGTCCTCGATGGCGGCAGCTTCTCCGCCGCTGCCCGCAAGCACCCGCTCACCCC GTCCGCCGTAGCGCGCCGGATGGACGCCCTGGAGCGCGCCGTCGGCAGCACCCTGCTGGTGCGCACCACCCA TGCGGTCCGCGCCACGCCGGCCGGCCTGGCCTTCGCCGACCGCGCCCGGCGGATCGTCACCGAACTGCGCCT GGCCCGCGCCGAAGCGGTGTCCCTGAGCACCGCGCCGCAGGGCCTGATCCGTATCGATGCGCCGGTGCCCTT CGGCCGCCGCCACCTGGCCCCGGCGATCGCCGACTTCCTCAAGGCCAACCCCGGGCTGGACGTGCAATTGCG CCTGATCGGCAGCTTCATCGACCTGCAGGGCGAACATCTCGGCGAGGTCGACCTGGTGTTGCGCGCCGGCCC GCTGCCCGACAGCCGCCTGGTGGCCACTTCGCTGGCGCCGATGGTGCGGGTCGTCTGCGCCAGCCCGGAGTA CCTGCGCGAACATGGCGTTCCCGCATCCCCCGGCGAACTGCCGGAGCATGCCGGCATCGATTGGGACAACCT GTCGCCACCCTATGCCTGGCGCTTCCAGCACGACGGCAAGCTCCAGCACCTGCGGCCGAAACGGGCGCGGCT GGCCACCAATAA