ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6182

TrivialName: PA14_27300

AnnotatorUID: diggins

Modification Date/Time: 2006-04-23 15:03:51

LocusName: PA14_27300

PAO1 Ortholog Locus:

Sequence Length: 1269

Protein Length: 422

Start: 2370127

Stop: 2368859

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAF10038.1|AE001904_14 (AE001904) hypothetical protein [Deinococcus radiodurans] Identities = 104/330 (31%), Positives = 129/330 (39%), Gaps = 53/330 (16%)

Sequence:

ATGGCAGCACGTAGTAGCCGTACACGCGTTTTTCCTTCGGCGTGTAGATCTCCAGACGATAGCGGAAATCGA
ACAGGCGCTCGGCCCGCGCCCGCTCCCAGACCAACGAGTCGAAGGGCGAGAGCAAGGCACTGGCGCCTAGCC
GCCTCGGCACCTGCGGTTCGCCGGGGCAGTAGGCCGGCTGGCTCCAGCCCTCGACCCGGACCGGCAGCAGCT
CGCCAGCCTCCACCAGTTCGGCGAGGCGCGCGCGGCTCTGCGCCGGGCTCAGCCGATAGTAGTCGCGCAGGT
CCTTTTCGGTGGCCACGCCCAGGGCGCTCGCCGCCATCCGCAACAGCTCGCGCTGGGCCTGTGCCTCCGAAA
GCTCGGGACGCGCCAGCAATTCCGCGGGAAACACTCGCTCCGGCAGATCATAGAGCCGCTCGAAACCGCGCC
GTCCGGCCACCGTCAGCTCACCGGCGGCGAACAGCCATTCCAGCGCATGCTTTTCCGCGCTCCAGTCCCACC
AGGGACCGGCCCGCTCCTGCCGCGTGCTCAGGCTGCCGGCACCCAGCGCGCCTTGCTCGCGCACCGCCTGCA
ACACCTGGCGGATCAGTGGCTGCTGTTCCCGGCCGAAACGTGCCAGTTGCTGGTAGATGCCCTGGCCGTCGG
CGGCCTGGCGCATCCGCCAGCGCATCAGCGGGTAGTGCTCCAGCGGCAGCAGCGAGGCCTCGTGCCCCCAGT
ATTCGAACAACTGGCGGTGACGGCCGACACTCCAGGCTGCCTCGTCGAGCAGCGTCATGGAGTAGGGACCGA
GGCGGGAAAACAGCGGCAGGTAGTGCGAGCGCACCAGCGCATTCACCGAATCGATCTGTAGCAGGCCGAGGC
GCGCGAGCATTTCGCGCAGATGCCGCCGCTGCACGCTGCGGCGCGTCCGCCGGCCGTCGAAGCCCTGCGCGG
CCAGGGCCAGGCGGCGGGCTTCGGCGAGGGAAAGCGAAAGACTCATGGAGCGCCCCAGTCGATGAAGGAGAC
TGCGAGTCTATCGTGCCCCCGCCGCCGCGCCAGCCCGGCGCGCCGCTGCGGTTCGCTCAATGCCGACGCAGC
GGGTCGTCCCAGAAATGCCGCTCGCCCTCTTGGAAGATATCCGCCCGACTCAGGCCGAGGTCCTTCAGCGCT
TCGTCGCTCATCCTCAGCAGTTCCCGGCGCTCGCGGGCCAACTGCAACCAGCGCCGCCAGCGACGCCACAAC
GACGGCGCAGCGGTCGAGGCGGGATGGGATGCAGCGTGGCAGTGA

Translation:

MAARSSRTRVFPSACRSPDDSGNRTGARPAPAPRPTSRRARARHWRLAASAPAVRRGSRPAGSSPRPGPAAA
RQPPPVRRGARGSAPGSADSSRAGPFRWPRPGRSPPSATARAGPVPPKARDAPAIPRETLAPADHRAARNRA
VRPPSAHRRRTAIPAHAFPRSSPTRDRPAPAACSGCRHPARLARAPPATPGGSVAAVPGRNVPVAGRCPGRR
RPGASASASAGSAPAAAARPRAPSIRTTGGDGRHSRLPRRAASWSRDRGGKTAAGSASAPAHSPNRSVAGRG
ARAFRADAAAARCGASAGRRSPARPGPGGGLRRGKAKDSWSAPVDEGDCESIVPPPPRQPGAPLRFAQCRRS
GSSQKCRSPSWKISARLRPRSFSASSLILSSSRRSRANCNQRRQRRHNDGAAVEAGWDAAWQ*

AnnotationID:6183 GeneID:6182

AnnotatorUID: diggins

Modification Date/Time: 2006-04-23 15:03:07

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: INACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:12220

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29482

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36183

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6182_cdd.html

URL:

GC ORFID: `49184`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2583800`	Stop: `2585068`
Length: `1269`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGCAGCACGTAGTAGCCGTACACGCGTTTTTCCTTCGGCGTGTAGATCTCCAGACGATAGCGGAAATCGA ACAGGCGCTCGGCCCGCGCCCGCTCCCAGACCAACGAGTCGAAGGGCGAGAGCAAGGCACTGGCGCCTAGCC GCCTCGGCACCTGCGGTTCGCCGGGGCAGTAGGCCGGCTGGCTCCAGCCCTCGACCCGGACCGGCAGCAGCT CGCCAGCCTCCACCAGTTCGGCGAGGCGCGCGCGGCTCTGCGCCGGGCTCAGCCGATAGTAGTCGCGCAGGT CCTTTTCGGTGGCCACGCCCAGGGCGCTCGCCGCCATCCGCAACAGCTCGCGCTGGGCCTGTGCCTCCGAAA GCTCGGGACGCGCCAGCAATTCCGCGGGAAACACTCGCTCCGGCAGATCATAGAGCCGCTCGAAACCGCGCC GTCCGGCCACCGTCAGCTCACCGGCGGCGAACAGCCATTCCAGCGCATGCTTTTCCGCGCTCCAGTCCCACC AGGGACCGGCCCGCTCCTGCCGCGTGCTCAGGCTGCCGGCACCCAGCGCGCCTTGCTCGCGCACCGCCTGCA ACACCTGGCGGATCAGTGGCTGCTGTTCCCGGCCGAAACGTGCCAGTTGCTGGTAGATGCCCTGGCCGTCGG CGGCCTGGCGCATCCGCCAGCGCATCAGCGGGTAGTGCTCCAGCGGCAGCAGCGAGGCCTCGTGCCCCCAGT ATTCGAACAACTGGCGGTGACGGCCGACACTCCAGGCTGCCTCGTCGAGCAGCGTCATGGAGTAGGGACCGA GGCGGGAAAACAGCGGCAGGTAGTGCGAGCGCACCAGCGCATTCACCGAATCGATCTGTAGCAGGCCGAGGC GCGCGAGCATTTCGCGCAGATGCCGCCGCTGCACGCTGCGGCGCGTCCGCCGGCCGTCGAAGCCCTGCGCGG CCAGGGCCAGGCGGCGGGCTTCGGCGAGGGAAAGCGAAAGACTCATGGAGCGCCCCAGTCGATGAAGGAGAC TGCGAGTCTATCGTGCCCCCGCCGCCGCGCCAGCCCGGCGCGCCGCTGCGGTTCGCTCAATGCCGACGCAGC GGGTCGTCCCAGAAATGCCGCTCGCCCTCTTGGAAGATATCCGCCCGACTCAGGCCGAGGTCCTTCAGCGCT TCGTCGCTCATCCTCAGCAGTTCCCGGCGCTCGCGGGCCAACTGCAACCAGCGCCGCCAGCGACGCCACAAC GACGGCGCAGCGGTCGAGGCGGGATGGGATGCAGCGTGGCAGTGA