ViewGene

Locus Name:
GeneID:
Location:

GeneID:6181
TrivialName: PA14_27320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27320
PAO1 Ortholog Locus:
Sequence Length:1683
Protein Length:560
Start: 2370209
Stop: 2371891
Strand: +
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM41083.1| (AE012281) filamentous haemagglutinin [Xanthomonas campestris pv. campestris str. ATCC 33913]
Identities = 104/403 (25%), Positives = 151/403 (37%), Gaps = 40/403 (9%)
Sequence:
ATGCCGAGGCGAACGGCATGGACGATGCCGCCCTGCACGATCTGGCCGAGCAGTTGCGCAGCATGGCCGCCT
GGCTGGGCCTGGCGACGGTGGCGATCGAGGGGCGCGGGGAGTTGGCGGTGCGCTTGCGCGGGGTGCTGCTCT
AGCGAACGCTCCCGCCGGGCGGCGGGAGCGGCCGCGGCGCGCTCAGCGGCGTACCTGCTTCAGGGTTTCGGC
GATCAGGAAGGCCAGCTCCAGCGACTGGTCGGCGTTCAGCCGCGGGTCGCAGTGGGTGTGGTAGCGGTCGCT
GAGGCCGTCTTCGGTGATCGGTCGCGAACCGCCGATGCATTCGGTGACGTTCTGCCCGGTCATCTCGATGTG
GATGCCGCCGGCGTAGCTGCCTTCGGCCTGGTGCACCTCGAAGAACTGGCGGACTTCGGCGAGCACGCGGGC
GAAGTCGCGGGTCTTGTAGCCGCTGGAGGCCTTGATGGTATTGCCGTGCATCGGGTCGGAACTCCACAGCAC
CTGGCGGCCCTCGCGCTGGATGGCCTGGATCAGGCGCGGCAGGTGGTCGCCGACCTTGTCGGCACCCATCCG
CACGATCAGGTTGAGGCGGCCCGGATCGTTGTCCGGGTTGAGAATATCGATCAGGCGGATCAGCTCCTCGCT
GTCCATGCTCGGTCCGACCTTGACCCCGATCGGATTGCCTACGCCGCGCAGCATCTCGACATGAGCGCCGTC
GAGCTGGCGGGTGCGGTCGCCGATCCAGAGCATGTGCGCCGAGCAGTCGTACCACTCGCCGGTCAGGCTGTC
GCGGCGGGTCAGGGCTTCCTCGTAGTTCAGCAGGAGCGCTTCGTGGGCGGTGAAGAAGCTGGTTTCGCGGAG
CTGCGGCGCGCTGTCCAGGCCGCAGGCGCGCATGAAGGCGAGGGTCTCGTCGATGCGGTCGGCGAGTTGCTG
GTAGCGCTCGGCCAGCGCCGAGTTGGCGATGAAGTCGAGGTTCCAGCGGTGCACCTGGTGCAGGTCGGCGAA
GCCGCCCTGGGCGAAGGCGCGCAACAGGTTGAGGCTGGCGGTGGACTGGTGGTAGGCCTGCAACAGGCGCTC
CGGGTCCGGCACGCGGCTCTTCTCGTCGAAGCCGATGCCGTTGACTATGTCGCCGCGATAGGCAGGCAGGGT
CACGCCGTTCTGCGTTTCGTCGCCGGAGGAGCGCGGCTTGGCGAACTGGCCGGCCATGCGCCCGACCTTCAC
TACCGGGCAGCCGGCGGCGAAGGTCATTACCACCGCCATCTGCAACAGTACCTTGAAGGTATCGCGGATCTT
CGCCGCGGAAAATTCGGCGAAGCTTTCCGCGCAATCCCCGCCCTGGAGCAAGAAGGCGCGTCCGGCGGTGAC
TTCGGCGAACTGCCGGCGCAGCTCGCGAGCCTCGCCGGCGAAGACCAGCGGCGGGTATCCGGCGAGGGTCTG
CTCGACCCTGGCCAGGTGCGCGGCATCGGGGTACTCGGGTTGTTGCTGGATCGGCTTGGCCCTCCAGCTCTC
GGGGCTCCAGGACTGGCTCATCTACGACTCTTGGCAATGCTCGGGAAAGCGGATTGCGGCATGGTAGAGCAG
CTCGCCGCAGCGCCGCCAGCGATCGTTGCAATAGCGGAAATCCATCGTCGGGCCGGCTTTGCTATGCTGCGG
TGCTTTTGCCGGAGCGCCTGGCGATAG
Translation:
MPRRTAWTMPPCTIWPSSCAAWPPGWAWRRWRSRGAGSWRCACAGCCSSERSRRAAGAAAARSAAYLLQGFG
DQEGQLQRLVGVQPRVAVGVVAVAEAVFGDRSRTADAFGDVLPGHLDVDAAGVAAFGLVHLEELADFGEHAG
EVAGLVAAGGLDGIAVHRVGTPQHLAALALDGLDQARQVVADLVGTHPHDQVEAARIVVRVENIDQADQLLA
VHARSDLDPDRIAYAAQHLDMSAVELAGAVADPEHVRRAVVPLAGQAVAAGQGFLVVQQERFVGGEEAGFAE
LRRAVQAAGAHEGEGLVDAVGELLVALGQRRVGDEVEVPAVHLVQVGEAALGEGAQQVEAGGGLVVGLQQAL
RVRHAALLVEADAVDYVAAIGRQGHAVLRFVAGGARLGELAGHAPDLHYRAAGGEGHYHRHLQQYLEGIADL
RRGKFGEAFRAIPALEQEGASGGDFGELPAQLASLAGEDQRRVSGEGLLDPGQVRGIGVLGLLLDRLGPPAL
GAPGLAHLRLLAMLGKADCGMVEQLAAAPPAIVAIAEIHRRAGFAMLRCFCRSAWR*
AnnotationID:6182GeneID:6181
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 19:07:36
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:12218
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29480
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49183How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2583718Stop: 2582036
Length: 1683
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCCGAGGCGAACGGCATGGACGATGCCGCCCTGCACGATCTGGCCGAGCAGTTGCGCAGCATGGCCGCCT
GGCTGGGCCTGGCGACGGTGGCGATCGAGGGGCGCGGGGAGTTGGCGGTGCGCTTGCGCGGGGTGCTGCTCT
AGCGAACGCTCCCGCCGGGCGGCGGGAGCGGCCGCGGCGCGCTCAGCGGCGTACCTGCTTCAGGGTTTCGGC
GATCAGGAAGGCCAGCTCCAGCGACTGGTCGGCGTTCAGCCGCGGGTCGCAGTGGGTGTGGTAGCGGTCGCT
GAGGCCGTCTTCGGTGATCGGTCGCGAACCGCCGATGCATTCGGTGACGTTCTGCCCGGTCATCTCGATGTG
GATGCCGCCGGCGTAGCTGCCTTCGGCCTGGTGCACCTCGAAGAACTGGCGGACTTCGGCGAGCACGCGGGC
GAAGTCGCGGGTCTTGTAGCCGCTGGAGGCCTTGATGGTATTGCCGTGCATCGGGTCGGAACTCCACAGCAC
CTGGCGGCCCTCGCGCTGGATGGCCTGGATCAGGCGCGGCAGGTGGTCGCCGACCTTGTCGGCACCCATCCG
CACGATCAGGTTGAGGCGGCCCGGATCGTTGTCCGGGTTGAGAATATCGATCAGGCGGATCAGCTCCTCGCT
GTCCATGCTCGGTCCGACCTTGACCCCGATCGGATTGCCTACGCCGCGCAGCATCTCGACATGAGCGCCGTC
GAGCTGGCGGGTGCGGTCGCCGATCCAGAGCATGTGCGCCGAGCAGTCGTACCACTCGCCGGTCAGGCTGTC
GCGGCGGGTCAGGGCTTCCTCGTAGTTCAGCAGGAGCGCTTCGTGGGCGGTGAAGAAGCTGGTTTCGCGGAG
CTGCGGCGCGCTGTCCAGGCCGCAGGCGCGCATGAAGGCGAGGGTCTCGTCGATGCGGTCGGCGAGTTGCTG
GTAGCGCTCGGCCAGCGCCGAGTTGGCGATGAAGTCGAGGTTCCAGCGGTGCACCTGGTGCAGGTCGGCGAA
GCCGCCCTGGGCGAAGGCGCGCAACAGGTTGAGGCTGGCGGTGGACTGGTGGTAGGCCTGCAACAGGCGCTC
CGGGTCCGGCACGCGGCTCTTCTCGTCGAAGCCGATGCCGTTGACTATGTCGCCGCGATAGGCAGGCAGGGT
CACGCCGTTCTGCGTTTCGTCGCCGGAGGAGCGCGGCTTGGCGAACTGGCCGGCCATGCGCCCGACCTTCAC
TACCGGGCAGCCGGCGGCGAAGGTCATTACCACCGCCATCTGCAACAGTACCTTGAAGGTATCGCGGATCTT
CGCCGCGGAAAATTCGGCGAAGCTTTCCGCGCAATCCCCGCCCTGGAGCAAGAAGGCGCGTCCGGCGGTGAC
TTCGGCGAACTGCCGGCGCAGCTCGCGAGCCTCGCCGGCGAAGACCAGCGGCGGGTATCCGGCGAGGGTCTG
CTCGACCCTGGCCAGGTGCGCGGCATCGGGGTACTCGGGTTGTTGCTGGATCGGCTTGGCCCTCCAGCTCTC
GGGGCTCCAGGACTGGCTCATCTACGACTCTTGGCAATGCTCGGGAAAGCGGATTGCGGCATGGTAGAGCAG
CTCGCCGCAGCGCCGCCAGCGATCGTTGCAATAGCGGAAATCCATCGTCGGGCCGGCTTTGCTATGCTGCGG
TGCTTTTGCCGGAGCGCCTGGCGATAG