ViewGene
Locus Name:
GeneID:
Location:

GeneID:6180
TrivialName: PA14_27340
AnnotatorUID: diggins
Modification Date/Time:2006-04-23 19:07:37
LocusName:PA14_27340
PAO1 Ortholog Locus:
Sequence Length:762
Protein Length:253
Start: 2372615
Stop: 2371854
Strand: -
Type:
ChromosomeID:2
Status: INACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAC71636.1| (AP005037) putative sugar phosphate isomerase [Streptomyces avermitilis MA-4680]
Identities = 51/196 (26%), Positives = 77/196 (39%), Gaps = 33/196 (16%)
Sequence:
TTGCGGCTCCAGCGCCGCGGCACGCGTCCGCAGGGCTTCCTGGTCGAGTTCGAGGGCCAGGTTCGCCGGCAC
CAGCATCACCACGTTGCCCTCGGCCACCGGACACTCCCAGTAATGATGGTGATAGCGCCCGCGCAGCAGCGG
CGCGCCCAGCGGCTTGCCATCGGTGCCGCTCCACTGGTTGATCACCAGCCAGCCATCCTCGGCGAGGCGCTC
CTGGCAGGCGCCGAGGAAATTCCAGGCCAGGTGCGCGGCCGACGGGCCGGTATCGGTATAGAGGTCGAGGAA
GATCAGGTCGGCCTCCGCGCATTCGCCCAGGCTCTCCAGTGCGTCGCCGATGCGCAATCGCAGGCGCGGGTC
GTCGCGCAGCCCCAGATGCTCACGGGCCAGGCGCGGAATCGCCGGGCGCAGCTCGATGGCCTCGGCCTCCTC
CAGCGGCAGGTGACGCAGGCAGGCCTGGGTCAGGCTACCGGCGCCGAAACCGAGGAACAACGCGCGACGCGG
TTGCGAATGGCAGAGCCCGCCGAGCAGCATGGCGCGGGTGTAGTCGTATTCCAGCCAGGCCGGATCGGGCAT
GAACACGCAGCTCTGCTCGACACCGTCGCCGAACTCGAGGAAGCGATAGTCGCCGGACTCGATGACCCGGAT
GACCCCGTATTCGTCGCGCTCCTCGACCAGCAGACGTTCTTCGCTCACCACTCACCTCCCCCCGCCGCTTCG
CCGGCTATCGCCAGGCGCTCCGGCAAAAGCACCGCAGCATAG
Translation:
MRLQRRGTRPQGFLVEFEGQVRRHQHHHVALGHRTLPVMMVIAPAQQRRAQRLAIGAAPLVDHQPAILGEAL
LAGAEEIPGQVRGRRAGIGIEVEEDQVGLRAFAQALQCVADAQSQARVVAQPQMLTGQARNRRAQLDGLGLL
QRQVTQAGLGQATGAETEEQRATRLRMAEPAEQHGAGVVVFQPGRIGHEHAALLDTVAELEEAIVAGLDDPD
DPVFVALLDQQTFFAHHSPPPAASPAIARRSGKSTAA*
AnnotationID:6181GeneID:6180
AnnotatorUID: diggins
Modification Date/Time: 2006-04-23 19:07:59
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:INACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15978




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29478




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49182How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2581312Stop: 2582073

          
Length: 762


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
TTGCGGCTCCAGCGCCGCGGCACGCGTCCGCAGGGCTTCCTGGTCGAGTTCGAGGGCCAGGTTCGCCGGCAC 
CAGCATCACCACGTTGCCCTCGGCCACCGGACACTCCCAGTAATGATGGTGATAGCGCCCGCGCAGCAGCGG 
CGCGCCCAGCGGCTTGCCATCGGTGCCGCTCCACTGGTTGATCACCAGCCAGCCATCCTCGGCGAGGCGCTC 
CTGGCAGGCGCCGAGGAAATTCCAGGCCAGGTGCGCGGCCGACGGGCCGGTATCGGTATAGAGGTCGAGGAA 
GATCAGGTCGGCCTCCGCGCATTCGCCCAGGCTCTCCAGTGCGTCGCCGATGCGCAATCGCAGGCGCGGGTC 
GTCGCGCAGCCCCAGATGCTCACGGGCCAGGCGCGGAATCGCCGGGCGCAGCTCGATGGCCTCGGCCTCCTC 
CAGCGGCAGGTGACGCAGGCAGGCCTGGGTCAGGCTACCGGCGCCGAAACCGAGGAACAACGCGCGACGCGG 
TTGCGAATGGCAGAGCCCGCCGAGCAGCATGGCGCGGGTGTAGTCGTATTCCAGCCAGGCCGGATCGGGCAT 
GAACACGCAGCTCTGCTCGACACCGTCGCCGAACTCGAGGAAGCGATAGTCGCCGGACTCGATGACCCGGAT 
GACCCCGTATTCGTCGCGCTCCTCGACCAGCAGACGTTCTTCGCTCACCACTCACCTCCCCCCGCCGCTTCG 
CCGGCTATCGCCAGGCGCTCCGGCAAAAGCACCGCAGCATAG