ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6179

TrivialName: PA14_27380

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_27380

PAO1 Ortholog Locus:

Sequence Length: 2100

Protein Length: 699

Start: 2373809

Stop: 2375908

Strand: +

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 166/594 (27%), Positives = 202/594 (34%), Gaps = 120/594 (20%)

Sequence:

ATGTATACGAGGCAAACCCATGACTCAGGAAACCGTCGGCTTCGCCGCGCTCGGTATTCACCCCAATGTGCT
CGCGGCAATCGTCGCCGTAGGCTACGAAGAGCCTTCGCCTATCCAGGCTCAATCGATTCCGCTGATCCTCGA
AGGCCACGACATGATCGGCCAGGCGCAGACCGGTACCGGCAAGACCGCCGCGTTCGCCCTGCCGCTGCTGTC
GCGCATCGACCCGAGCCGTCGCGAGCCGCAGATGCTGGTGCTGGTGCCGACCCGCGAGCTGGCCCTGCAGGT
CGCCACCGCCTGCGAAACCTATTCCAAGCAATTGCCGGGCGTCGGCGTGGTCGCCGTCTACGGCGGCGCGCC
CATGGGGCCGCAACTGAAGGCCCTGCGCCAGGGCGCACAGATCCTCGTCGCTACCCCCGGCCGCCTGTGCGA
CCACCTGCGCCGCGACGAGAAGCTGCTGGCCACCGTCCAGCGCCTGGTGCTCGACGAAGCCGACGAGATGCT
CAAGCTCGGCTTCATGGACGACCTGGAAGTGATCTTCGAGGCGCTTCCCGAATCGCGCCAGACCGTGCTCTT
CTCGGCGACCCTGCCGGCGTCCATCCGTGGCATCGCCGAGCGCCACCTGAAGCAGCCCAAGCACGTCAAGAT
CGCCGCCAAGACCCAGACCGTGGCGCGCATCGAGCAGGTCCACCTGATGGTCCATGCCGACCAGAAGGCCGG
TTCGATCCAGCGCCTGCTGGAAGTCGAGCAGTTCGACGCGCTGATCGCCTTCGTCCGCACCAAGCAGGCCAC
CCTCGACTACGCCGAATTGCTCGAGCGCCAGGGCTACCGCGCCGCCGCGCTCAACGGCGACATGCCGCAGGC
CCAGCGCGAGCGGGTCATCGAGTCGCTGAAGGACGGTTCGCTGGACATCGTCATCGCCACCGACGTTGCTGC
CCGGGGCCTGGACGTACCGCGCATCACCCACGTGCTGAACATCGATATGCCCTACGACCCCGAGTCCTACGT
GCACCGCATCGGCCGTACCGGCCGTGCCGGTCGGGAAGGGCGCGCGCTGTTGCTGGTGACTCCGCGCGAGCG
GCGCATGCTGCAGGTGATCGAGCGGGTCACCGGGCAGAAGGTCGGCGAAGTCCGCCTGCCGGATGCCGAGAC
CGTACTGGAGGCCCGCCTGGCGCGCCTGGCCGCGAGCCTGACGCCCTTGCTCGACAGCGCCGTCGAGCAGCG
CGGCGCGGTGCGCGACGAGCTGTGCCGTCGCCTCGGCTGCGATGCCGAGACCCTGGCCGCCGCACTGCTGGC
GCGCCTGACCGCCGGCAAGGCGCTGGACCTGGAGTCGGTGCGCCGCGAACAGCCGCTGACCCCATCGGCACC
GCGCGAGCGTGCCGACCGTGGCGAACGCGGCGAGCGTCCGGAGCGCAGCGGCGAGCGTCGTCCGATGGCGCC
GCCGAGCGAAGGCCGTGCCCGCTGCCGCACCGCCCTCGGCGCGCGCGACGGGGTCGCGGCGAAGAACCTGCT
GGGCGCGATCCTCAACGAGGGCGGCCTGTCCCGCGAGGACATCGGCCGCATCCAGATTCGCGATACCTTCAG
CCTGATCGAACTACCCGAGGCCAACCTCGAGCGCCTGCTGACCAAGCTCAAGGACACCCGCGTCGCCGGCAA
GGCCCTGCGCCTGCGCCGCTATCGCGAGGACTGAGGTCCAGCGCGATGAACAAAAGCCCCGCTTCGGCGGGG
CTTTTTCATGGGCTTGATGTTTGCTGGCCGGGCTGTTTTTCGCGCCTGCCCCGGCTTCTCGTTTCGTCACCC
CGGGCGAGCCCCTCTGGCAAGCGTCTAAAGGAAACAAAAGACTCGCCCAGCCGCCAGGGCAGGCACCACGTC
GTGCATGCCAGACCTGCACATACCGAAGCCCTGATCCGCCGCCTATCCATGACATCGCGGATAACGCCTATG
GCGTTATTCGCGCTACAGGACTATATCGCTCGCGATTTCCTGGCTGCCAGCCGAGTCCACCCAGCTTGCGGC
GGGAAGCCAATGCTCTCCGCCAGTCCCACGAGAAGTTCTGTCAATCGAAGCGATAGATATCCATCCCCAACG
AGCCCAGGGTAA

Translation:

MYTRQTHDSGNRRLRRARYSPQCARGNRRRRLRRAFAYPGSIDSADPRRPRHDRPGADRYRQDRRVRPAAAV
AHRPEPSRAADAGAGADPRAGPAGRHRLRNLFQAIAGRRRGRRLRRRAHGAATEGPAPGRTDPRRYPRPPVR
PPAPRREAAGHRPAPGARRSRRDAQARLHGRPGSDLRGASRIAPDRALLGDPAGVHPWHRRAPPEAAQARQD
RRQDPDRGAHRAGPPDGPCRPEGRFDPAPAGSRAVRRADRLRPHQAGHPRLRRIARAPGLPRRRAQRRHAAG
PARAGHRVAEGRFAGHRHRHRRCCPGPGRTAHHPRAEHRYALRPRVLRAPHRPYRPCRSGRARAVAGDSARA
AHAAGDRAGHRAEGRRSPPAGCRDRTGGPPGAPGREPDALARQRRRAARRGARRAVPSPRLRCRDPGRRTAG
APDRRQGAGPGVGAPRTAADPIGTARACRPWRTRRASGAQRRASSDGAAERRPCPLPHRPRRARRGRGEEPA
GRDPQRGRPVPRGHRPHPDSRYLQPDRTTRGQPRAPADQAQGHPRRRQGPAPAPLSRGLRSSAMNKSPASAG
LFHGLDVCWPGCFSRLPRLLVSSPRASPSGKRLKETKDSPSRQGRHHVVHARPAHTEALIRRLSMTSRITPM
ALFALQDYIARDFLAASRVHPACGGKPMLSASPTRSSVNRSDRYPSPTSPG*

AnnotationID:6180 GeneID:6179

AnnotatorUID: diggins

Modification Date/Time: 2004-12-02 13:01:20

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:12214

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29476

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36173

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6179_cdd.html

URL:

GC ORFID: `49181`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2580118`	Stop: `2578019`
Length: `2100`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGTATACGAGGCAAACCCATGACTCAGGAAACCGTCGGCTTCGCCGCGCTCGGTATTCACCCCAATGTGCT CGCGGCAATCGTCGCCGTAGGCTACGAAGAGCCTTCGCCTATCCAGGCTCAATCGATTCCGCTGATCCTCGA AGGCCACGACATGATCGGCCAGGCGCAGACCGGTACCGGCAAGACCGCCGCGTTCGCCCTGCCGCTGCTGTC GCGCATCGACCCGAGCCGTCGCGAGCCGCAGATGCTGGTGCTGGTGCCGACCCGCGAGCTGGCCCTGCAGGT CGCCACCGCCTGCGAAACCTATTCCAAGCAATTGCCGGGCGTCGGCGTGGTCGCCGTCTACGGCGGCGCGCC CATGGGGCCGCAACTGAAGGCCCTGCGCCAGGGCGCACAGATCCTCGTCGCTACCCCCGGCCGCCTGTGCGA CCACCTGCGCCGCGACGAGAAGCTGCTGGCCACCGTCCAGCGCCTGGTGCTCGACGAAGCCGACGAGATGCT CAAGCTCGGCTTCATGGACGACCTGGAAGTGATCTTCGAGGCGCTTCCCGAATCGCGCCAGACCGTGCTCTT CTCGGCGACCCTGCCGGCGTCCATCCGTGGCATCGCCGAGCGCCACCTGAAGCAGCCCAAGCACGTCAAGAT CGCCGCCAAGACCCAGACCGTGGCGCGCATCGAGCAGGTCCACCTGATGGTCCATGCCGACCAGAAGGCCGG TTCGATCCAGCGCCTGCTGGAAGTCGAGCAGTTCGACGCGCTGATCGCCTTCGTCCGCACCAAGCAGGCCAC CCTCGACTACGCCGAATTGCTCGAGCGCCAGGGCTACCGCGCCGCCGCGCTCAACGGCGACATGCCGCAGGC CCAGCGCGAGCGGGTCATCGAGTCGCTGAAGGACGGTTCGCTGGACATCGTCATCGCCACCGACGTTGCTGC CCGGGGCCTGGACGTACCGCGCATCACCCACGTGCTGAACATCGATATGCCCTACGACCCCGAGTCCTACGT GCACCGCATCGGCCGTACCGGCCGTGCCGGTCGGGAAGGGCGCGCGCTGTTGCTGGTGACTCCGCGCGAGCG GCGCATGCTGCAGGTGATCGAGCGGGTCACCGGGCAGAAGGTCGGCGAAGTCCGCCTGCCGGATGCCGAGAC CGTACTGGAGGCCCGCCTGGCGCGCCTGGCCGCGAGCCTGACGCCCTTGCTCGACAGCGCCGTCGAGCAGCG CGGCGCGGTGCGCGACGAGCTGTGCCGTCGCCTCGGCTGCGATGCCGAGACCCTGGCCGCCGCACTGCTGGC GCGCCTGACCGCCGGCAAGGCGCTGGACCTGGAGTCGGTGCGCCGCGAACAGCCGCTGACCCCATCGGCACC GCGCGAGCGTGCCGACCGTGGCGAACGCGGCGAGCGTCCGGAGCGCAGCGGCGAGCGTCGTCCGATGGCGCC GCCGAGCGAAGGCCGTGCCCGCTGCCGCACCGCCCTCGGCGCGCGCGACGGGGTCGCGGCGAAGAACCTGCT GGGCGCGATCCTCAACGAGGGCGGCCTGTCCCGCGAGGACATCGGCCGCATCCAGATTCGCGATACCTTCAG CCTGATCGAACTACCCGAGGCCAACCTCGAGCGCCTGCTGACCAAGCTCAAGGACACCCGCGTCGCCGGCAA GGCCCTGCGCCTGCGCCGCTATCGCGAGGACTGAGGTCCAGCGCGATGAACAAAAGCCCCGCTTCGGCGGGG CTTTTTCATGGGCTTGATGTTTGCTGGCCGGGCTGTTTTTCGCGCCTGCCCCGGCTTCTCGTTTCGTCACCC CGGGCGAGCCCCTCTGGCAAGCGTCTAAAGGAAACAAAAGACTCGCCCAGCCGCCAGGGCAGGCACCACGTC GTGCATGCCAGACCTGCACATACCGAAGCCCTGATCCGCCGCCTATCCATGACATCGCGGATAACGCCTATG GCGTTATTCGCGCTACAGGACTATATCGCTCGCGATTTCCTGGCTGCCAGCCGAGTCCACCCAGCTTGCGGC GGGAAGCCAATGCTCTCCGCCAGTCCCACGAGAAGTTCTGTCAATCGAAGCGATAGATATCCATCCCCAACG AGCCCAGGGTAA