ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6178

TrivialName: PA14_27540

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_27540

PAO1 Ortholog Locus:

Sequence Length: 2460

Protein Length: 819

Start: 2392299

Stop: 2389840

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAK53449.1| (AY032926) unknown [Streptomyces aureofaciens] Identities = 177/643 (27%), Positives = 223/643 (34%), Gaps = 90/643 (13%)

Sequence:

ATGGGCTATGCTAGGCGGCAGAACCTCGCCAAGGCTGATCCCCGCCCCCATGGATATAGCGCTGACCCATCG
CCTGTCGTTCAAACAGGCCAGCCTCACCGTGCTGGTGGCCTTTATCCTGGGAACCCTGCTCAGCCTGATTCA
GGTTGGCGTCGATTATGCCAGCCAGGACGCATCCATCAATCGCGAAGTGCGCGCGCTGCTGGACGTCAGCCA
CAACCCCGCCGCGCGAATCGCCTACAACATCGATGCGGAGCTGGCCCAGGAGCTGGTCCTCGGCCTGCTGCG
TTCGCCCGCCGTAGTCCGCGCGGAAATCATCGACACCTCCGGCCTGCCGCTGGCCAGCGCCTCGCGCGAACC
CGCCGAAAGCCGCCTGCGGCCGCTCAGCGACTTCCTCTTCGGCCACAAGCGGGTCTACGAGGACCCGTTGCA
TGTCGACCATGCGCCGGGCGAGGCCCTCGGCGTACTGCAGCTGGAAATCGACACCTTCGTGTTCGGCAACGA
CTTCCTCCGTCGCGCCGGCATCACCCTGCTCTCCGGCTTCGTGCGCAGCCTGCTGCTGTCGCTGATCCTGCT
GGTGCTCTTCTACACCCTGCTGACCAAGCCCCTGGTCAGCCTGATCCAGGCCCTCAGCGGACACGATCCACG
CTCGCCGGCACGCATGCGCCTGCCCTGCCCCAAGGGCCACGAACGCGACGAGATCGGCGTGCTGGTGGAAGT
CATCAACCGCCAGCTCGGGCGCATCTCGGTAGAGATCGAACAGCGCAGGGAGGCGGAGAACCGCCTGACCCA
GTATCTGGAGGAGCTGGAAAGCATCGTCGCCGCCCGTACCGCCGAGCTGAAGGCCGCCAACGCGCGCCTGAC
GCTGTCCAACCAGGAACTCGAAGAAGCCCGCCAGACCGCCCTCGACATGGCCCAGGCCCGCGCCAGCTTCCT
GGCCAACATGAGCCACGAGATCCGCACGCCGCTGAACGGCCTGCTCGGCATGCTCTCGCTGAGCCTCGACGG
CCCGCTCACCCCGGAACAGCGCCAACAGCTGTCGATCGCCCACGACTCCGGCAAGGTGCTGGTGGAATTGCT
CAACGACGTGCTCGACCTCTCCAAGTTCGAGGCCGGGCAACTGGTCCTGGAACAGATCCCGTTCGACCTGGG
CGTCCTGGTGGAAGACACCGCCAGCCTCCTCTCGCAGAACGCCGCGGCCGGCGTGGAGTTGACCTGCCTGGT
CGACCCCGCCCTGCCCGCCCAGGTTTCCGGCGACCCGACGCGGATTCGCCAGGTCGTCAGCAACCTGCTGTC
CAACGCGCTGAAGTTCACCCGCCTGGGGCGGGTCGACGTTCGCGTGGAAGCCACCGCCGAGGGTGTGCGCAT
CAGTGTGCGCGACACCGGCATCGGCATCGCCCAGGAGGCGCTGGATCGCATCTTCCAACCGTTCACCCAGGC
CGACGCGGGTATCACCCGCCAATACGGCGGCACCGGCCTCGGCCTGGCCCTCACGCGCAAGCTGTGCGAGGC
CATGCAGGGCGAACTGACGGTGGAGTCGACGGTCGGCCTGGGCAGCCTGTTCAGCGTCGGCCTGCCGCTGGC
GCCGGTCAGCCCTCCGCTACAGGCGCTGCCGCTGCGCGGCCGGGTGATCGCGCAATGCTCGGCCAACAGCGG
GCTGGCGCAGCTGCTGCAAACCTGGCTGCCGCGCTGGGGCCTGGAGTACAAGCGTCTGGAGACCGACGACAG
CCTGCTCGGCCACTCGCTCGACGTACTGATATCGGATTGCCCGGACTGCCTGATGGGACTGCGTCCGAGCAT
CGGTACGCCGATCCTGCTGGTCACCGCCTACGGCAGTTTCCTCGAACCGGAGCTGGCCCGCCGCCTGTCGCC
GTTGCGCCAACTGGCCAGGCCGCTGAGTCGCAACCAGTTGTACCAGGCCCTGAAACACGTGCTCGAACACAC
CGCCATAGCCCCGTCGAGCGCCTCGGACACCGCGGGAGAACAGCGCGACACCCGGGTCCTGCTGGTGGAGGA
CAACCCGGTCAACCAGTTGGTCGCCAAGGGCCTGCTGCACAAGCTCGGCTGCCAGGTATGGATCGCCGAACA
CGGGCTGAATGCCCTGAAGATGCTGGAGGAGCATCCCATCGACCTGGTCCTGATGGACTGCAACATGCCGGT
GATGGACGGCTACGAAGCGACCCGGCAGATCCGCGACAGCGGACGCTGGGGCGGCCTGCCGATCATCGCGCT
GACCGCCAACGCCCTGCCGGACGAGCGCGAACGTTGTCGTGCCGCCGGCATGGACGACTACCTGGCCAAGCC
CTTCCACCGCGACGAACTGAAGGCCATCCTCGACCGCTGGTGCCCGCTCACCGCGGGCGACTAGCCGGTCTC
GCGACGACGGCTAGCCTCCCACCACCAGGCGAAAACGCGACAGCAACCCGCCCAGGCGCTGGTGCAGGTCGA
ACATCTCGTTGA

Translation:

MGYARRQNLAKADPRPHGYSADPSPVVQTGQPHRAGGLYPGNPAQPDSGWRRLCQPGRIHQSRSARAAGRQP
QPRRANRLQHRCGAGPGAGPRPAAFARRSPRGNHRHLRPAAGQRLARTRRKPPAAAQRLPLRPQAGLRGPVA
CRPCAGRGPRRTAAGNRHLRVRQRLPPSRRHHPALRLRAQPAAVADPAGALLHPADQAPGQPDPGPQRTRST
LAGTHAPALPQGPRTRRDRRAGGSHQPPARAHLGRDRTAQGGGEPPDPVSGGAGKHRRRPYRRAEGRQRAPD
AVQPGTRRSPPDRPRHGPGPRQLPGQHEPRDPHAAERPARHALAEPRRPAHPGTAPTAVDRPRLRQGAGGIA
QRRARPLQVRGRATGPGTDPVRPGRPGGRHRQPPLAERRGRRGVDLPGRPRPARPGFRRPDADSPGRQQPAV
QRAEVHPPGAGRRSRGSHRRGCAHQCARHRHRHRPGGAGSHLPTVHPGRRGYHPPIRRHRPRPGPHAQAVRG
HAGRTDGGVDGRPGQPVQRRPAAGAGQPSATGAAAARPGDRAMLGQQRAGAAAANLAAALGPGVQASGDRRQ
PARPLARRTDIGLPGLPDGTASEHRYADPAGHRLRQFPRTGAGPPPVAVAPTGQAAESQPVVPGPETRARTH
RHSPVERLGHRGRTARHPGPAGGGQPGQPVGRQGPAAQARLPGMDRRTRAECPEDAGGASHRPGPDGLQHAG
DGRLRSDPADPRQRTLGRPADHRADRQRPAGRARTLSCRRHGRLPGQALPPRRTEGHPRPLVPAHRGRLAGL
ATTASLPPPGENATATRPGAGAGRTSR*

AnnotationID:6179 GeneID:6178

AnnotatorUID: diggins

Modification Date/Time: 2004-12-02 20:08:46

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:12212

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:29474

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36191

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 6178_cdd.html

URL:

GC ORFID: `49180`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `2561628`	Stop: `2564087`
Length: `2460`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGGCTATGCTAGGCGGCAGAACCTCGCCAAGGCTGATCCCCGCCCCCATGGATATAGCGCTGACCCATCG CCTGTCGTTCAAACAGGCCAGCCTCACCGTGCTGGTGGCCTTTATCCTGGGAACCCTGCTCAGCCTGATTCA GGTTGGCGTCGATTATGCCAGCCAGGACGCATCCATCAATCGCGAAGTGCGCGCGCTGCTGGACGTCAGCCA CAACCCCGCCGCGCGAATCGCCTACAACATCGATGCGGAGCTGGCCCAGGAGCTGGTCCTCGGCCTGCTGCG TTCGCCCGCCGTAGTCCGCGCGGAAATCATCGACACCTCCGGCCTGCCGCTGGCCAGCGCCTCGCGCGAACC CGCCGAAAGCCGCCTGCGGCCGCTCAGCGACTTCCTCTTCGGCCACAAGCGGGTCTACGAGGACCCGTTGCA TGTCGACCATGCGCCGGGCGAGGCCCTCGGCGTACTGCAGCTGGAAATCGACACCTTCGTGTTCGGCAACGA CTTCCTCCGTCGCGCCGGCATCACCCTGCTCTCCGGCTTCGTGCGCAGCCTGCTGCTGTCGCTGATCCTGCT GGTGCTCTTCTACACCCTGCTGACCAAGCCCCTGGTCAGCCTGATCCAGGCCCTCAGCGGACACGATCCACG CTCGCCGGCACGCATGCGCCTGCCCTGCCCCAAGGGCCACGAACGCGACGAGATCGGCGTGCTGGTGGAAGT CATCAACCGCCAGCTCGGGCGCATCTCGGTAGAGATCGAACAGCGCAGGGAGGCGGAGAACCGCCTGACCCA GTATCTGGAGGAGCTGGAAAGCATCGTCGCCGCCCGTACCGCCGAGCTGAAGGCCGCCAACGCGCGCCTGAC GCTGTCCAACCAGGAACTCGAAGAAGCCCGCCAGACCGCCCTCGACATGGCCCAGGCCCGCGCCAGCTTCCT GGCCAACATGAGCCACGAGATCCGCACGCCGCTGAACGGCCTGCTCGGCATGCTCTCGCTGAGCCTCGACGG CCCGCTCACCCCGGAACAGCGCCAACAGCTGTCGATCGCCCACGACTCCGGCAAGGTGCTGGTGGAATTGCT CAACGACGTGCTCGACCTCTCCAAGTTCGAGGCCGGGCAACTGGTCCTGGAACAGATCCCGTTCGACCTGGG CGTCCTGGTGGAAGACACCGCCAGCCTCCTCTCGCAGAACGCCGCGGCCGGCGTGGAGTTGACCTGCCTGGT CGACCCCGCCCTGCCCGCCCAGGTTTCCGGCGACCCGACGCGGATTCGCCAGGTCGTCAGCAACCTGCTGTC CAACGCGCTGAAGTTCACCCGCCTGGGGCGGGTCGACGTTCGCGTGGAAGCCACCGCCGAGGGTGTGCGCAT CAGTGTGCGCGACACCGGCATCGGCATCGCCCAGGAGGCGCTGGATCGCATCTTCCAACCGTTCACCCAGGC CGACGCGGGTATCACCCGCCAATACGGCGGCACCGGCCTCGGCCTGGCCCTCACGCGCAAGCTGTGCGAGGC CATGCAGGGCGAACTGACGGTGGAGTCGACGGTCGGCCTGGGCAGCCTGTTCAGCGTCGGCCTGCCGCTGGC GCCGGTCAGCCCTCCGCTACAGGCGCTGCCGCTGCGCGGCCGGGTGATCGCGCAATGCTCGGCCAACAGCGG GCTGGCGCAGCTGCTGCAAACCTGGCTGCCGCGCTGGGGCCTGGAGTACAAGCGTCTGGAGACCGACGACAG CCTGCTCGGCCACTCGCTCGACGTACTGATATCGGATTGCCCGGACTGCCTGATGGGACTGCGTCCGAGCAT CGGTACGCCGATCCTGCTGGTCACCGCCTACGGCAGTTTCCTCGAACCGGAGCTGGCCCGCCGCCTGTCGCC GTTGCGCCAACTGGCCAGGCCGCTGAGTCGCAACCAGTTGTACCAGGCCCTGAAACACGTGCTCGAACACAC CGCCATAGCCCCGTCGAGCGCCTCGGACACCGCGGGAGAACAGCGCGACACCCGGGTCCTGCTGGTGGAGGA CAACCCGGTCAACCAGTTGGTCGCCAAGGGCCTGCTGCACAAGCTCGGCTGCCAGGTATGGATCGCCGAACA CGGGCTGAATGCCCTGAAGATGCTGGAGGAGCATCCCATCGACCTGGTCCTGATGGACTGCAACATGCCGGT GATGGACGGCTACGAAGCGACCCGGCAGATCCGCGACAGCGGACGCTGGGGCGGCCTGCCGATCATCGCGCT GACCGCCAACGCCCTGCCGGACGAGCGCGAACGTTGTCGTGCCGCCGGCATGGACGACTACCTGGCCAAGCC CTTCCACCGCGACGAACTGAAGGCCATCCTCGACCGCTGGTGCCCGCTCACCGCGGGCGACTAGCCGGTCTC GCGACGACGGCTAGCCTCCCACCACCAGGCGAAAACGCGACAGCAACCCGCCCAGGCGCTGGTGCAGGTCGA ACATCTCGTTGA